ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184796.1| Oryza sativa (japonica cultivar-group), mRNA 70 5e-09
2gb|AY023193.1| Oryza sativa microsatellite MRG5518 containing (G... 70 5e-09
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 70 5e-09
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
5gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genom... 70 5e-09
6gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic ... 70 5e-09
7dbj|AK068322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 5e-09
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
9dbj|AP005497.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
10ref|XM_483666.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.28
11ref|XM_507324.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.28
12gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL03... 44 0.28
13gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 44 0.28
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
15dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
16dbj|AK104490.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.28
17dbj|AK070842.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.28
18ref|XM_463142.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
19gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
20gb|AC135501.4| Oryza sativa chromosome 3 BAC OSJNBb0011J16 genom... 42 1.1
21emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.1
22emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.1
23emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 42 1.1
24gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic... 42 1.1
25dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
26gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
27emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.1
28gb|AC167666.4| Culex pipiens quinquefasciatus, clone Culex pipie... 40 4.4
29ref|XM_464518.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.4
30gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 40 4.4
31gb|AC084046.13| Trypanosoma brucei chromosome 6 clone RPCI93-3D8... 40 4.4
32ref|NM_029850.2| Mus musculus B-cell CLL/lymphoma 7A (Bcl7a), mRNA 40 4.4
33gb|AC144714.4| Mus musculus BAC clone RP24-371M20 from chromosom... 40 4.4
34gb|BC038481.1| Mus musculus B-cell CLL/lymphoma 7A, mRNA (cDNA c... 40 4.4
35gb|BC046777.1| Mus musculus B-cell CLL/lymphoma 7A, mRNA (cDNA c... 40 4.4
36gb|AC113504.10| Mus musculus chromosome 5, clone RP23-370G17, co... 40 4.4
37ref|XM_987782.1| PREDICTED: Mus musculus hypothetical protein LO... 40 4.4
38ref|XM_992598.1| PREDICTED: Mus musculus low density lipoprotein... 40 4.4
39ref|XM_899854.2| PREDICTED: Mus musculus low density lipoprotein... 40 4.4
40ref|XM_899846.2| PREDICTED: Mus musculus low density lipoprotein... 40 4.4
41ref|XM_899859.2| PREDICTED: Mus musculus low density lipoprotein... 40 4.4
42ref|XM_130308.5| PREDICTED: Mus musculus low density lipoprotein... 40 4.4
43ref|XM_921143.2| PREDICTED: Mus musculus low density lipoprotein... 40 4.4
44ref|XM_921164.2| PREDICTED: Mus musculus low density lipoprotein... 40 4.4
45ref|XM_130363.6| PREDICTED: Mus musculus low density lipoprotein... 40 4.4
46ref|XM_921174.2| PREDICTED: Mus musculus low density lipoprotein... 40 4.4
47ref|XM_909085.2| PREDICTED: Mus musculus low density lipoprotein... 40 4.4
48gb|BC017640.1| Mus musculus B-cell CLL/lymphoma 7A, mRNA (cDNA c... 40 4.4
49gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 4.4
50gb|AF532105.1|AF532104S2 Aegilops tauschii strain TA1649 cosmid ... 40 4.4
51gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.4
52gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.4
53dbj|AK157720.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 40 4.4
54dbj|AK165434.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 4.4
55dbj|AK084165.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 4.4
56dbj|AK049346.2| Mus musculus ES cells cDNA, RIKEN full-length en... 40 4.4
57dbj|AK086803.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 4.4
58dbj|AK044782.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 4.4
59dbj|AK014498.1| Mus musculus 14 days embryo liver cDNA, RIKEN fu... 40 4.4
60dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
61gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 4.4
62dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
63dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.4
64gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 4.4
65dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 4.4
66dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
67dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
68dbj|AK068381.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
69emb|Z74475.1|CER04F11 Caenorhabditis elegans Cosmid R04F11, comp... 40 4.4
70emb|AL845489.10| Mouse DNA sequence from clone RP23-300E5 on chr... 40 4.4
71gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 4.4
72gb|AC126054.5| Mus musculus BAC clone RP23-298O13 from 8, comple... 40 4.4 
>ref|NM_184796.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2859

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 293 caaccccttcgaggccatctggtcgcgccgcaagttcga 331
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 168 caaccccttcgaggccatctggtcccgccgcaagttcga 206



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 229 aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 285
           |||||| |||||||||||| || || || |||||||| ||||| |||||||||||||
Sbjct: 83  aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 139
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>gb|AY023193.1| Oryza sativa microsatellite MRG5518 containing (GCG)X9, closest to
           marker G1316, genomic sequence
          Length = 227

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 293 caaccccttcgaggccatctggtcgcgccgcaagttcga 331
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 139 caaccccttcgaggccatctggtcccgccgcaagttcga 177



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 229 aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 285
           |||||| |||||||||||| || || || |||||||| ||||| |||||||||||||
Sbjct: 54  aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 110
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                       
Query: 293      caaccccttcgaggccatctggtcgcgccgcaagttcga 331
                |||||||||||||||||||||||| ||||||||||||||
Sbjct: 22100266 caaccccttcgaggccatctggtcccgccgcaagttcga 22100228



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                         
Query: 229      aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 285
                |||||| |||||||||||| || || || |||||||| ||||| |||||||||||||
Sbjct: 22100351 aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 22100295



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 265      cgcgcggggccgcggcggcgg 285
                |||||||||||||||||||||
Sbjct: 30354909 cgcgcggggccgcggcggcgg 30354889



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 265      cgcgcggggccgcggcggcgg 285
                |||||||||||||||||||||
Sbjct: 22749757 cgcgcggggccgcggcggcgg 22749737



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 265      cgcgcggggccgcggcggcgg 285
                |||||||||||||||||||||
Sbjct: 22749657 cgcgcggggccgcggcggcgg 22749637



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 275      cgcggcggcggagcggagca 294
                ||||||||||||||||||||
Sbjct: 11182531 cgcggcggcggagcggagca 11182550
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                       
Query: 293      caaccccttcgaggccatctggtcgcgccgcaagttcga 331
                |||||||||||||||||||||||| ||||||||||||||
Sbjct: 22093295 caaccccttcgaggccatctggtcccgccgcaagttcga 22093257



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                         
Query: 229      aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 285
                |||||| |||||||||||| || || || |||||||| ||||| |||||||||||||
Sbjct: 22093380 aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 22093324



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 265      cgcgcggggccgcggcggcgg 285
                |||||||||||||||||||||
Sbjct: 30446331 cgcgcggggccgcggcggcgg 30446311



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 265      cgcgcggggccgcggcggcgg 285
                |||||||||||||||||||||
Sbjct: 22742786 cgcgcggggccgcggcggcgg 22742766



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 265      cgcgcggggccgcggcggcgg 285
                |||||||||||||||||||||
Sbjct: 22742686 cgcgcggggccgcggcggcgg 22742666



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 275      cgcggcggcggagcggagca 294
                ||||||||||||||||||||
Sbjct: 11179294 cgcggcggcggagcggagca 11179313
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>gb|AC109602.6| Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete
             sequence
          Length = 167397

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                    
Query: 293   caaccccttcgaggccatctggtcgcgccgcaagttcga 331
             |||||||||||||||||||||||| ||||||||||||||
Sbjct: 48016 caaccccttcgaggccatctggtcccgccgcaagttcga 48054



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                      
Query: 229   aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 285
             |||||| |||||||||||| || || || |||||||| ||||| |||||||||||||
Sbjct: 47931 aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 47987
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>gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete
              sequence
          Length = 132987

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                     
Query: 293    caaccccttcgaggccatctggtcgcgccgcaagttcga 331
              |||||||||||||||||||||||| ||||||||||||||
Sbjct: 124614 caaccccttcgaggccatctggtcccgccgcaagttcga 124652



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                       
Query: 229    aggggaggaacggcccggcggccgtggccatgaaggcgcgcggggccgcggcggcgg 285
              |||||| |||||||||||| || || || |||||||| ||||| |||||||||||||
Sbjct: 124529 aggggaagaacggcccggctgcggtcgcgatgaaggcccgcggcgccgcggcggcgg 124585
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>dbj|AK068322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150A21, full
           insert sequence
          Length = 3259

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 293 caaccccttcgaggccatctggtcgcgccgcaagttcga 331
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 104 caaccccttcgaggccatctggtcccgccgcaagttcga 142
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 264      gcgcgcggggccgcggcggcggag 287
                ||||||||||||||||||||||||
Sbjct: 18739775 gcgcgcggggccgcggcggcggag 18739752



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 272     ggccgcggcggcggagcgga 291
               ||||||||||||||||||||
Sbjct: 5654928 ggccgcggcggcggagcgga 5654909
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>dbj|AP005497.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0071O21
          Length = 158410

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 264   gcgcgcggggccgcggcggcggag 287
             ||||||||||||||||||||||||
Sbjct: 82417 gcgcgcggggccgcggcggcggag 82394
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>ref|XM_483666.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1158

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ggccgcggcggcggagcggagc 293
           ||||||||||||||||||||||
Sbjct: 60  ggccgcggcggcggagcggagc 39
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>ref|XM_507324.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1479_B11.9 mRNA
          Length = 1229

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ggccgcggcggcggagcggagc 293
           ||||||||||||||||||||||
Sbjct: 71  ggccgcggcggcggagcggagc 50
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>gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL034244.2 R2R3-MYB gene
             region
          Length = 65993

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 272   ggccgcggcggcggagcggagc 293
             ||||||||||||||||||||||
Sbjct: 57041 ggccgcggcggcggagcggagc 57062
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 177     gcggcctcggcggacaagaaaa 198
               ||||||||||||||||||||||
Sbjct: 4857439 gcggcctcggcggacaagaaaa 4857418
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 272      ggccgcggcggcggagcggagc 293
                ||||||||||||||||||||||
Sbjct: 27552001 ggccgcggcggcggagcggagc 27552022
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>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1479_B11
          Length = 105702

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 272   ggccgcggcggcggagcggagc 293
             ||||||||||||||||||||||
Sbjct: 34291 ggccgcggcggcggagcggagc 34312
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>dbj|AK104490.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B09, full
           insert sequence
          Length = 1158

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ggccgcggcggcggagcggagc 293
           ||||||||||||||||||||||
Sbjct: 60  ggccgcggcggcggagcggagc 39
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>dbj|AK070842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074O14, full
           insert sequence
          Length = 1229

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 272 ggccgcggcggcggagcggagc 293
           ||||||||||||||||||||||
Sbjct: 71  ggccgcggcggcggagcggagc 50
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>ref|XM_463142.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 207

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 265 cgcgcggggccgcggcggcgg 285
           |||||||||||||||||||||
Sbjct: 8   cgcgcggggccgcggcggcgg 28
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>gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0034J04
             map S1466, complete sequence
          Length = 140012

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 265   cgcgcggggccgcggcggcgg 285
             |||||||||||||||||||||
Sbjct: 19688 cgcgcggggccgcggcggcgg 19668



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 265   cgcgcggggccgcggcggcgg 285
             |||||||||||||||||||||
Sbjct: 19588 cgcgcggggccgcggcggcgg 19568
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>gb|AC135501.4| Oryza sativa chromosome 3 BAC OSJNBb0011J16 genomic sequence, complete
             sequence
          Length = 124170

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 265   cgcgcggggccgcggcggcgg 285
             |||||||||||||||||||||
Sbjct: 87421 cgcgcggggccgcggcggcgg 87401



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 265   cgcgcggggccgcggcggcgg 285
             |||||||||||||||||||||
Sbjct: 87321 cgcgcggggccgcggcggcgg 87301
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 269     cggggccgcggcggcggagcg 289
               |||||||||||||||||||||
Sbjct: 4057376 cggggccgcggcggcggagcg 4057356
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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 263    ggcgcgcggggccgcggcggc 283
              |||||||||||||||||||||
Sbjct: 144929 ggcgcgcggggccgcggcggc 144909
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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 263    ggcgcgcggggccgcggcggc 283
              |||||||||||||||||||||
Sbjct: 257347 ggcgcgcggggccgcggcggc 257327
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>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete
              sequence
          Length = 149380

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 265    cgcgcggggccgcggcggcgg 285
              |||||||||||||||||||||
Sbjct: 122106 cgcgcggggccgcggcggcgg 122126
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 265     cgcgcggggccgcggcggcgg 285
               |||||||||||||||||||||
Sbjct: 9503119 cgcgcggggccgcggcggcgg 9503139



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 265     cgcgcggggccgcggcggcgg 285
               |||||||||||||||||||||
Sbjct: 9502998 cgcgcggggccgcggcggcgg 9503018
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 265     cgcgcggggccgcggcggcgg 285
               |||||||||||||||||||||
Sbjct: 9503004 cgcgcggggccgcggcggcgg 9503024



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 265     cgcgcggggccgcggcggcgg 285
               |||||||||||||||||||||
Sbjct: 9502883 cgcgcggggccgcggcggcgg 9502903
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>emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb0077C18 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 123766

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 265   cgcgcggggccgcggcggcgg 285
             |||||||||||||||||||||
Sbjct: 88343 cgcgcggggccgcggcggcgg 88363



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 265   cgcgcggggccgcggcggcgg 285
             |||||||||||||||||||||
Sbjct: 88222 cgcgcggggccgcggcggcgg 88242
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>gb|AC167666.4| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940120D9, complete sequence
          Length = 115819

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   ggccgatggcagctggcgcg 179
             ||||||||||||||||||||
Sbjct: 45096 ggccgatggcagctggcgcg 45077
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>ref|XM_464518.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 814

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 ggccgcggcggcggagcgga 291
           ||||||||||||||||||||
Sbjct: 321 ggccgcggcggcggagcgga 340
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    agaaaacgaacaagaagaaa 212
              ||||||||||||||||||||
Sbjct: 263460 agaaaacgaacaagaagaaa 263479
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>gb|AC084046.13| Trypanosoma brucei chromosome 6 clone RPCI93-3D8, complete sequence
          Length = 154240

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   agaaaacgaacaagaagaaa 212
             ||||||||||||||||||||
Sbjct: 56607 agaaaacgaacaagaagaaa 56626
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>ref|NM_029850.2| Mus musculus B-cell CLL/lymphoma 7A (Bcl7a), mRNA
          Length = 3820

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 gaacaagaagaaaggcaagg 219
           ||||||||||||||||||||
Sbjct: 290 gaacaagaagaaaggcaagg 309
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>gb|AC144714.4| Mus musculus BAC clone RP24-371M20 from chromosome 8, complete sequence
          Length = 176994

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    gaacaagaagaaaggcaagg 219
              ||||||||||||||||||||
Sbjct: 146557 gaacaagaagaaaggcaagg 146538
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>gb|BC038481.1| Mus musculus B-cell CLL/lymphoma 7A, mRNA (cDNA clone MGC:47407
           IMAGE:4501205), complete cds
          Length = 3820

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 gaacaagaagaaaggcaagg 219
           ||||||||||||||||||||
Sbjct: 290 gaacaagaagaaaggcaagg 309
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>gb|BC046777.1| Mus musculus B-cell CLL/lymphoma 7A, mRNA (cDNA clone MGC:61344
           IMAGE:5709511), complete cds
          Length = 2506

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 gaacaagaagaaaggcaagg 219
           ||||||||||||||||||||
Sbjct: 195 gaacaagaagaaaggcaagg 214
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>gb|AC113504.10| Mus musculus chromosome 5, clone RP23-370G17, complete sequence
          Length = 219617

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    gaacaagaagaaaggcaagg 219
              ||||||||||||||||||||
Sbjct: 110587 gaacaagaagaaaggcaagg 110606
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>ref|XM_987782.1| PREDICTED: Mus musculus hypothetical protein LOC667020 (LOC667020),
           mRNA
          Length = 390

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 296 gcgcggggccgcggcggcgg 315
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>ref|XM_992598.1| PREDICTED: Mus musculus low density lipoprotein receptor-related
           protein 2 (Lrp2), mRNA
          Length = 15482

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 180 gcgcggggccgcggcggcgg 199
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>ref|XM_899854.2| PREDICTED: Mus musculus low density lipoprotein receptor-related
           protein 2, transcript variant 4 (Lrp2), mRNA
          Length = 3986

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 180 gcgcggggccgcggcggcgg 199
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>ref|XM_899846.2| PREDICTED: Mus musculus low density lipoprotein receptor-related
           protein 2, transcript variant 3 (Lrp2), mRNA
          Length = 4408

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 180 gcgcggggccgcggcggcgg 199
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>ref|XM_899859.2| PREDICTED: Mus musculus low density lipoprotein receptor-related
           protein 2, transcript variant 5 (Lrp2), mRNA
          Length = 15446

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 180 gcgcggggccgcggcggcgg 199
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>ref|XM_130308.5| PREDICTED: Mus musculus low density lipoprotein receptor-related
           protein 2, transcript variant 1 (Lrp2), mRNA
          Length = 15467

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 180 gcgcggggccgcggcggcgg 199
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>ref|XM_921143.2| PREDICTED: Mus musculus low density lipoprotein receptor-related
           protein 2, transcript variant 7 (Lrp2), mRNA
          Length = 2266

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 180 gcgcggggccgcggcggcgg 199
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>ref|XM_921164.2| PREDICTED: Mus musculus low density lipoprotein receptor-related
           protein 2, transcript variant 8 (Lrp2), mRNA
          Length = 3986

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 180 gcgcggggccgcggcggcgg 199
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>ref|XM_130363.6| PREDICTED: Mus musculus low density lipoprotein receptor-related
           protein 2, transcript variant 2 (Lrp2), mRNA
          Length = 4408

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 180 gcgcggggccgcggcggcgg 199
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>ref|XM_921174.2| PREDICTED: Mus musculus low density lipoprotein receptor-related
           protein 2, transcript variant 9 (Lrp2), mRNA
          Length = 15446

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 180 gcgcggggccgcggcggcgg 199
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>ref|XM_909085.2| PREDICTED: Mus musculus low density lipoprotein receptor-related
           protein 2, transcript variant 6 (Lrp2), mRNA
          Length = 15467

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 180 gcgcggggccgcggcggcgg 199
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>gb|BC017640.1| Mus musculus B-cell CLL/lymphoma 7A, mRNA (cDNA clone MGC:28969
           IMAGE:4482250), complete cds
          Length = 2135

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 gaacaagaagaaaggcaagg 219
           ||||||||||||||||||||
Sbjct: 279 gaacaagaagaaaggcaagg 298
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     gcgcgcggggccgcggcggc 283
               ||||||||||||||||||||
Sbjct: 2374216 gcgcgcggggccgcggcggc 2374197
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>gb|AF532105.1|AF532104S2 Aegilops tauschii strain TA1649 cosmid 69-7-1 putative GAG-POL
             precursor, gene, complete cds; and unknown genes
          Length = 11825

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   gggccgcggcggcggagcgg 290
             ||||||||||||||||||||
Sbjct: 10414 gggccgcggcggcggagcgg 10395
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>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0011G21, from chromosome 3, complete sequence
          Length = 142401

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   cgcggcggcggagcggagca 294
             ||||||||||||||||||||
Sbjct: 95888 cgcggcggcggagcggagca 95907
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>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0085H08, from chromosome 3, complete sequence
          Length = 126708

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   cgcggcggcggagcggagca 294
             ||||||||||||||||||||
Sbjct: 98198 cgcggcggcggagcggagca 98179
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>dbj|AK157720.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
           enriched library, clone:B130008D23 product:B-cell
           CLL/lymphoma 7A, full insert sequence
          Length = 4641

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 gaacaagaagaaaggcaagg 219
           ||||||||||||||||||||
Sbjct: 314 gaacaagaagaaaggcaagg 333
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>dbj|AK165434.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
           library, clone:F520015P22 product:low density
           lipoprotein receptor-related protein 2, full insert
           sequence
          Length = 3950

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 142 gcgcggggccgcggcggcgg 161
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>dbj|AK084165.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
           enriched library, clone:D230004K18 product:LOW-DENSITY
           LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2 PRECURSOR
           (MEGALIN) (GLYCOPROTEIN 330) homolog [Rattus
           norvegicus], full insert sequence
          Length = 4372

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 143 gcgcggggccgcggcggcgg 162
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>dbj|AK049346.2| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:C330026G04 product:low density lipoprotein
           receptor-related protein 2, full insert sequence
          Length = 2229

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcgcggggccgcggcggcgg 285
           ||||||||||||||||||||
Sbjct: 143 gcgcggggccgcggcggcgg 162
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>dbj|AK086803.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
           library, clone:E030001O10 product:B-cell CLL/lymphoma
           7A, full insert sequence
          Length = 3782

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 gaacaagaagaaaggcaagg 219
           ||||||||||||||||||||
Sbjct: 362 gaacaagaagaaaggcaagg 381
to top
>dbj|AK044782.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930104J06 product:B-cell CLL/lymphoma 7A, full
           insert sequence
          Length = 3754

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 gaacaagaagaaaggcaagg 219
           ||||||||||||||||||||
Sbjct: 336 gaacaagaagaaaggcaagg 355
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>dbj|AK014498.1| Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched
           library, clone:4432415N06 product:B-cell CLL/lymphoma
           7A, full insert sequence
          Length = 2515

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 gaacaagaagaaaggcaagg 219
           ||||||||||||||||||||
Sbjct: 308 gaacaagaagaaaggcaagg 327
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 266      gcgcggggccgcggcggcgg 285
                ||||||||||||||||||||
Sbjct: 24642183 gcgcggggccgcggcggcgg 24642202
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 238     acggcccggcggccgtggcc 257
               ||||||||||||||||||||
Sbjct: 2700282 acggcccggcggccgtggcc 2700263
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1040D09
          Length = 148102

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   gcgcggggccgcggcggcgg 285
             ||||||||||||||||||||
Sbjct: 68146 gcgcggggccgcggcggcgg 68165
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 142     cggccatggcgaagacgaggccga 165
               |||||| |||||||||||||||||
Sbjct: 2369169 cggccagggcgaagacgaggccga 2369192
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     ctcggccatggcgaagacga 159
               ||||||||||||||||||||
Sbjct: 1409974 ctcggccatggcgaagacga 1409993
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    cggccatggcgaagacgagg 161
              ||||||||||||||||||||
Sbjct: 649782 cggccatggcgaagacgagg 649801
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>dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0407B12
          Length = 148762

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   gcgcggggccgcggcggcgg 285
             ||||||||||||||||||||
Sbjct: 10760 gcgcggggccgcggcggcgg 10779
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>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   ggccgcggcggcggagcgga 291
             ||||||||||||||||||||
Sbjct: 82664 ggccgcggcggcggagcgga 82645
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>dbj|AK068381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147P03, full
           insert sequence
          Length = 813

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 ggccgcggcggcggagcgga 291
           ||||||||||||||||||||
Sbjct: 320 ggccgcggcggcggagcgga 339
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>emb|Z74475.1|CER04F11 Caenorhabditis elegans Cosmid R04F11, complete sequence
          Length = 32975

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  gacaagaaaacgaacaagaagaaa 212
            |||||||||||||| |||||||||
Sbjct: 6598 gacaagaaaacgaagaagaagaaa 6575
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>emb|AL845489.10| Mouse DNA sequence from clone RP23-300E5 on chromosome 2, complete
              sequence
          Length = 183980

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    gcgcggggccgcggcggcgg 285
              ||||||||||||||||||||
Sbjct: 167605 gcgcggggccgcggcggcgg 167586
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    cggccatggcgaagacgagg 161
              ||||||||||||||||||||
Sbjct: 311960 cggccatggcgaagacgagg 311979
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>gb|AC126054.5| Mus musculus BAC clone RP23-298O13 from 8, complete sequence
          Length = 233117

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    gcgcggggccgcggcggcgg 285
              ||||||||||||||||||||
Sbjct: 118107 gcgcggggccgcggcggcgg 118126


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,895,480
Number of Sequences: 3902068
Number of extensions: 1895480
Number of successful extensions: 50192
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48916
Number of HSP's gapped (non-prelim): 1276
length of query: 331
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 309
effective length of database: 17,147,199,772
effective search space: 5298484729548
effective search space used: 5298484729548
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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