ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CMC2_CAEEL (Q20799) Probable calcium-binding mitochondrial carri... 31 1.4
2YQKA_SCHPO (O74522) Protein C1494.10 in chromosome III 30 4.0
3PRIA_BACSU (P94461) Primosomal protein N' (EC 3.6.1.-) (ATP-depe... 30 4.0
4SYS_CAUCR (Q9A6T4) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--... 30 4.0
5GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor 29 5.2
6CBL_HUMAN (P22681) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) ... 29 6.8
7YB1D_SCHPO (P87178) Hypothetical protein C3D6.13c in chromosome II 29 6.8
8POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase... 28 8.9

>CMC2_CAEEL (Q20799) Probable calcium-binding mitochondrial carrier F55A11.4|
          Length = 588

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -1

Query: 399 VRMSFVAVHIRIRTASGWVIALPGDRPGVHPGLPSGTEILVTSKFLLKGFAVPSMLLQLR 220
           V +S+V V+ ++RT  G  +   G    +H  LP     ++   F  + F +      LR
Sbjct: 516 VSISYV-VYEKVRTGLGVPVCSRGGLEDIHQFLPCSIHSIIQFFFFPRTFLLTISGRSLR 574

Query: 219 LKPSCNAHFS 190
           +KP   +HFS
Sbjct: 575 VKPVWRSHFS 584



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>YQKA_SCHPO (O74522) Protein C1494.10 in chromosome III|
          Length = 964

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 146 PGSREGGLPAHRPWPVPKSPKGREEHGKTEETENTRASSLPN 21
           P  + GG+P   P PV   P   ++H +   T +  A +LP+
Sbjct: 461 PVKQVGGMPLQSPLPVSMKPSA-DDHSRATPTRSVEAPTLPS 501



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>PRIA_BACSU (P94461) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 805

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 274 LKIPFKRLCGAVDAPAAEVKAVVQRALLADAERE 173
           +KIP   LC   D  +A +K ++Q+ LL ++  E
Sbjct: 216 VKIPAAELCKKTDTSSATIKTLIQKGLLKESYEE 249



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>SYS_CAUCR (Q9A6T4) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 482

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 104 PVPKSPKGREEHGKTEETENTRASSLPNGR 15
           P P+ P G +EHG  E+     A+ LP G+
Sbjct: 109 PAPEVPAGEDEHGNLEQRRWGDATKLPAGK 138



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>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor|
          Length = 639

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 134 EGGLPAHRPWPVPKSPKGREEHGKTEETENTRASSLPNGR 15
           EG  P   P+P P+ P   EEH + EE E  R      G+
Sbjct: 96  EGEQPRPFPFPRPRQPHQEEEHEQKEEHEWHRKEEKHGGK 135



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>CBL_HUMAN (P22681) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal|
           transduction protein CBL) (Proto-oncogene c-CBL)
           (Casitas B-lineage lymphoma proto-oncogene) (RING finger
           protein 55)
          Length = 906

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -2

Query: 119 AHRPWPVPKSPKGREEHGKTEETENTRASSLP 24
           A RP PVPK P G +  G+ E+TE    SS P
Sbjct: 677 AARPLPVPKLPPGEQCEGE-EDTEYMTPSSRP 707



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>YB1D_SCHPO (P87178) Hypothetical protein C3D6.13c in chromosome II|
          Length = 726

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 98  PKSPKGREEHGKTEETENTRASSLPNG 18
           P  PK +EE   TEETE ++ S  P G
Sbjct: 254 PSFPKEKEEKENTEETEESKKSINPTG 280



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>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC|
           1.3.1.33) (PCR) (NADPH-protochlorophyllide
           oxidoreductase) (POR) (LPOR)
          Length = 322

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 155 GDVDIPFPFGIGEKCALHDGFNLSCRSIDGTAKPFK 262
           G + IP P  +G+   L  GF      IDG  KPFK
Sbjct: 155 GKIPIPAPADLGDLSGLEAGFKAPIAMIDG--KPFK 188


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,092,995
Number of Sequences: 219361
Number of extensions: 1337258
Number of successful extensions: 4402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4395
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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