ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38c05 |
|---|---|
| Clone Library Name | barley_pub |
>RRP44_HUMAN (Q9Y2L1) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 44) (DIS3 protein homolog) Length = 958 Score = 83.2 bits (204), Expect = 3e-16 Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 12/110 (10%) Frame = +1 Query: 136 MLQSKSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXX------------XXXXX 279 ML+SK+F+KKT+ G V+K+VREHYLRDDI CGA C +C Sbjct: 1 MLKSKTFLKKTRAGGVMKIVREHYLRDDIGCGAPGCAACGGAHEGPALEPQPQDPASSVC 60 Query: 280 XXXXILVVDTNVVLHQIDLLENPAIXXXXXXXXXXXXXKNKNLSVYNRLK 429 L+ DTNV+LHQID+LE+PAI +N++ VY R++ Sbjct: 61 PQPHYLLPDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIR 110
>RRP44_YEAST (Q08162) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 44) (Protein DIS3) Length = 1001 Score = 57.8 bits (138), Expect = 1e-08 Identities = 40/114 (35%), Positives = 50/114 (43%), Gaps = 19/114 (16%) Frame = +1 Query: 148 KSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSC------------------XXXXXXX 273 K FV+ ++ G K+VREHYLR DIPC + SC C Sbjct: 22 KVFVR-SRNGGATKIVREHYLRSDIPCLSRSCTKCPQIVVPDAQNELPKFILSDSPLELS 80 Query: 274 XXXXXXILVVDTNVVLHQIDLLENP-AIXXXXXXXXXXXXXKNKNLSVYNRLKT 432 +V+DTNVVL IDLLENP +NK+ VY RL+T Sbjct: 81 APIGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRT 134
>DIS3_SCHPO (P37202) Mitotic control protein dis3| Length = 970 Score = 51.2 bits (121), Expect = 1e-06 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 18/114 (15%) Frame = +1 Query: 142 QSKSFVKKTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXXXXXXXXXXX---------- 291 + + FV+ T+ G+V KVVRE YLR+DIPC + +CP C Sbjct: 18 RDRVFVRATR-GKVQKVVREQYLRNDIPCQSRACPLCRSKLPKDSRGNVLEPILSEKPMF 76 Query: 292 -------ILVVDTNVVLHQIDLLENP-AIXXXXXXXXXXXXXKNKNLSVYNRLK 429 L+ D+N+ H ID LE+P +K++ +YNR+K Sbjct: 77 LEKFGHHYLIPDSNIFYHCIDALEHPNNFFDVIILQTVFSEISSKSIPLYNRMK 130
>RRP44_CAEEL (Q17632) Probable exosome complex exonuclease RRP44 (EC 3.1.13.-)| (Ribosomal RNA-processing protein 44) (DIS3 protein homolog) Length = 1029 Score = 33.5 bits (75), Expect = 0.23 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 10/100 (10%) Frame = +1 Query: 163 KTKQGRVVKVVREHYLRDDIPCGAFSCPSCXXXXX----------XXXXXXXXILVVDTN 312 + + G+V K E YLR+D+ CG C +C L+VD+ Sbjct: 21 QNRSGKVYKRAEERYLRNDLSCGLAQCGTCKDFGTNPLLKIENPVRNAKVGRHALIVDST 80 Query: 313 VVLHQIDLLENPAIXXXXXXXXXXXXXKNKNLSVYNRLKT 432 ++ DL ++ + K K + Y ++ + Sbjct: 81 SLIRFYDLFDSSLLRDLIVTQTVWEGVKAKAVPAYKKMNS 120
>SODF_BACSU (O35023) Probable superoxide dismutase [Fe] (EC 1.15.1.1)| Length = 281 Score = 30.4 bits (67), Expect = 1.9 Identities = 10/27 (37%), Positives = 19/27 (70%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILNR 349 LEP + ++++LH +HH+ + D LN+ Sbjct: 92 LEPYISRDIMILHHTKHHQSYVDGLNK 118
>KCNA5_RABIT (P50638) Potassium voltage-gated channel subfamily A member 5| (Voltage-gated potassium channel subunit Kv1.5) Length = 598 Score = 30.4 bits (67), Expect = 1.9 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = -2 Query: 421 CCTRRGSCSSLRPAPPTAPRHPQSPDSP 338 C RRG+ RP PP P PQS SP Sbjct: 49 CSARRGAEPGERPLPPQPPELPQSRRSP 76
>SODM_PEA (P27084) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 233 Score = 30.0 bits (66), Expect = 2.5 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 328 LEPV+ GE++ +H +HH+ + N+ + Q D Sbjct: 52 LEPVISGEIMQIHHQKHHQTYITNYNKALEQLHD 85
>SODM2_MAIZE (P41978) Superoxide dismutase [Mn] 3.2, mitochondrial precursor (EC| 1.15.1.1) Length = 232 Score = 30.0 bits (66), Expect = 2.5 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILN-RRILQQID 328 LEPV+ GE++ LH +HH + ++N + L+Q+D Sbjct: 45 LEPVISGEIMRLHHQKHHATY--VVNYNKALEQLD 77
>SODM_CHLPN (Q9Z9C4) Superoxide dismutase [Mn] (EC 1.15.1.1)| Length = 207 Score = 30.0 bits (66), Expect = 2.5 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILN 352 LEPV+ E+++LH +HH+ + + LN Sbjct: 18 LEPVISSEIMILHHQKHHQIYINNLN 43
>PTF1A_HUMAN (Q7RTS3) Pancreas transcription factor 1 subunit alpha| (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48) Length = 328 Score = 29.6 bits (65), Expect = 3.3 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 Query: 418 CTRRGSCSSLRPAPPTAPRHPQSPDS 341 C R G+C L+PAPP AP P S Sbjct: 61 CYRDGACLLLQPAPPAAPLALAPPSS 86
>SODM_HEVBR (P35017) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 233 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 328 LEP + GE++ LH +HH+ + N+ + Q D Sbjct: 43 LEPAISGEIMQLHHQKHHQTYITNYNKALEQLND 76
>SODM_CANAL (O13401) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 234 Score = 29.3 bits (64), Expect = 4.3 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = -3 Query: 426 EPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 328 EP + G++ +H+ +HH+ + + LN I Q ++ Sbjct: 49 EPYISGQINEIHYTKHHQTYVNNLNASIEQAVE 81
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 29.3 bits (64), Expect = 4.3 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 418 CTRRGSCSSLRPAPPTAPRHPQSPDSP 338 C GSC +L P PP++ R P SP +P Sbjct: 71 CKNGGSCQALLPTPPSS-RSPTSPLTP 96
>SODM_CAPAN (O49066) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 228 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 328 LEP + GE++ LH +HH+ + N + Q D Sbjct: 40 LEPAISGEIMQLHHQKHHQTYITNYNNALQQLHD 73
>SODM4_MAIZE (P41980) Superoxide dismutase [Mn] 3.4, mitochondrial precursor (EC| 1.15.1.1) Length = 233 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 328 LEP + GE++ LH +HH + N + L+Q+D Sbjct: 45 LEPAISGEIMRLHHQKHHATYVGNYN-KALEQLD 77
>SODM_PROFR (P80293) Superoxide dismutase [Mn/Fe] (EC 1.15.1.1)| Length = 201 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILN 352 LEP + GE++ LH +HH+ + D N Sbjct: 15 LEPYISGEIMELHHDKHHKAYVDGAN 40
>SODM_CHLTR (O84296) Superoxide dismutase [Mn] (EC 1.15.1.1)| Length = 206 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILNRRI 343 LEPV+ E++ LH +HH+ + + LN + Sbjct: 18 LEPVISAEIMQLHHQKHHQGYINNLNEAL 46
>SODM_CHLMU (Q9PKA0) Superoxide dismutase [Mn] (EC 1.15.1.1)| Length = 205 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILNRRI 343 LEPV+ E++ LH +HH+ + + LN + Sbjct: 18 LEPVISAEIMHLHHQKHHQGYINNLNEAL 46
>SODM_ORYSA (Q43008) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 231 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 328 LEP + GE++ LH +HH + N + L+Q+D Sbjct: 43 LEPAISGEIMRLHHQKHHATYVANYN-KALEQLD 75
>SODM_ARATH (O81235) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 231 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQID 328 LEP + GE++ +H +HH+ + N L+Q+D Sbjct: 43 LEPAISGEIMQIHHQKHHQAYVTNYN-NALEQLD 75
>SODM3_MAIZE (P41979) Superoxide dismutase [Mn] 3.3, mitochondrial precursor (EC| 1.15.1.1) Length = 233 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILN-RRILQQID 328 LEPV+ GE++ LH ++H + ++N + L+QID Sbjct: 45 LEPVISGEIMRLHHQKNHATY--VVNYNKALEQID 77
>SODB_ASPNG (Q3MSU9) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 210 Score = 28.1 bits (61), Expect = 9.7 Identities = 10/32 (31%), Positives = 20/32 (62%) Frame = -3 Query: 429 LEPVVHGEVLVLHFVQHHRQHHDILNRRILQQ 334 LEP++ +++ LH +HH+ + + LN + Q Sbjct: 17 LEPIISKQIMELHHKKHHQTYVNNLNAALASQ 48
>CTRO_MOUSE (P49025) Citron Rho-interacting kinase (EC 2.7.11.1) (CRIK)| (Rho-interacting, serine/threonine-protein kinase 21) Length = 2055 Score = 28.1 bits (61), Expect = 9.7 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -2 Query: 385 PAPPTAPRHPQSPDSP 338 PAPP P HP+ P +P Sbjct: 1967 PAPPEGPSHPREPSTP 1982
>CTRO_HUMAN (O14578) Citron Rho-interacting kinase (EC 2.7.11.1) (CRIK)| (Rho-interacting, serine/threonine-protein kinase 21) Length = 2027 Score = 28.1 bits (61), Expect = 9.7 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -2 Query: 385 PAPPTAPRHPQSPDSP 338 PAPP P HP+ P +P Sbjct: 1941 PAPPEGPSHPREPSTP 1956 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,615,895 Number of Sequences: 219361 Number of extensions: 279485 Number of successful extensions: 1833 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1690 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1818 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
