ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135644.2| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
4ref|XM_482051.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
5ref|XM_482041.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
6ref|XM_480601.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
7ref|XM_480600.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
9dbj|AP004647.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
10dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
11dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
12dbj|AK119306.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
13ref|XM_482045.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.026
14ref|XM_480291.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.10
15gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome... 46 0.10
16gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.10
17dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
18dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
19ref|XM_482374.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
20ref|XM_482373.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
21ref|XM_482172.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
22ref|XM_482171.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
23ref|XM_480286.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
24gb|AC111128.24| Mus musculus chromosome 18, clone RP23-338I7, co... 44 0.40
25gb|AC121576.2| Mus musculus BAC clone RP23-244D21 from 18, compl... 44 0.40
26dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
27dbj|AP005502.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
28dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
29dbj|AK103311.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
30dbj|AK071467.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
31dbj|AK066779.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
32gb|AC133461.12| Mus musculus chromosome 15, clone RP23-52B2, com... 42 1.6
33emb|BX883049.1| Rattus norvegicus chromosome 20, major histocomp... 42 1.6
34gb|AC107772.19| Mus musculus chromosome 15, clone RP23-102L5, co... 40 6.3
35gb|AC009738.3| Drosophila melanogaster clone BACR02J10, complete... 40 6.3
36gb|AC147676.10| Canis Familiaris, clone XX-25H12, complete sequence 40 6.3
37gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.3
38gb|AC121938.3| Mus musculus BAC clone RP24-208D21 from chromosom... 40 6.3
39emb|AL732372.15| Human DNA sequence from clone RP4-669L17 on chr... 40 6.3
40emb|AL627309.15| Human DNA sequence from clone RP11-34P13 on chr... 40 6.3
41emb|AL606534.15| Human DNA sequence from clone RP11-261C10 on ch... 40 6.3
42emb|AL672310.3| Human DNA sequence from clone RP11-226I21 on chr... 40 6.3
43gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.3
44gb|AC182391.3| Pan troglodytes BAC clone CH251-510H16 from chrom... 40 6.3
45gb|AY113487.1| Drosophila melanogaster RE46170 full insert cDNA 40 6.3
46gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, comp... 40 6.3
47ref|NM_137598.2| Drosophila melanogaster Odorant-binding protein... 40 6.3
48gb|AC096762.3| Homo sapiens BAC clone RP11-621I20 from 4, comple... 40 6.3
49gb|AC092670.2| Homo sapiens BAC clone RP11-586D5 from 4, complet... 40 6.3
50gb|AY071723.1| Drosophila melanogaster RH38644 full length cDNA 40 6.3
51dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
52gb|AC012005.4|AC012005 Homo sapiens clone RP11-533E23, complete ... 40 6.3
53gb|AC138393.2| Homo sapiens chromosome 1 clone RP11-504P24, comp... 40 6.3
54gb|AC136309.9| Homo sapiens chromosome 11, clone RP11-242C5, com... 40 6.3
55gb|AC006328.5|AC006328 Homo sapiens BAC clone RP11-102O5 from Y,... 40 6.3
56gb|AC005627.2|AC005627 Homo sapiens PAC clone RP4-577P23 from 1,... 40 6.3
57ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 40 6.3
58gb|AC131281.7| Homo sapiens chromosome 8, clone RP11-585F1, comp... 40 6.3
59gb|AF282056.1|AF282056 Homo sapiens clone 2qtel_edc17iR sequence 40 6.3
60gb|AC138033.1| Homo sapiens chromosome 5 clone XXcos-B22C66, com... 40 6.3
61gb|AC137934.1| Homo sapiens chromosome 16 clone XXcos-yA11c16, c... 40 6.3
62gb|AC114498.2| Homo sapiens chromosome 1 clone RP5-857K21, compl... 40 6.3
63gb|AC130223.2| Homo sapiens cosmid clone XXcos-2003C17 from 2, c... 40 6.3
64gb|AC134873.2| Homo sapiens cosmid clone XXcos-2003C15 from 2, c... 40 6.3
65emb|BX649379.10| Human DNA sequence from clone RP5-1040D10 on ch... 40 6.3
66gb|AC004908.1|AC004908 Homo sapiens PAC clone RP5-855D21, comple... 40 6.3
67gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55... 40 6.3
68dbj|AP006222.1| Homo sapiens genomic DNA, chromosome Un, clone:C... 40 6.3
69gb|AC004307.1|AC004307 Drosophila melanogaster DNA sequence (P1 ... 40 6.3 
>gb|AC135644.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0085H07, complete sequence
          Length = 133291

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 357   tggatgaatgaggtgcgggagctctcctatgacatggaggact 399
             |||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 98080 tggatgaaggaggtgcgcgagctctcctacgacatcgaggact 98038



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 357   tggatgaatgaggtgcgggagctctcctatgacatggaggact 399
             |||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 97294 tggatgaaggaggtgcgcgagctctcctacgacatcgaggact 97336
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 357      tggatgaatgaggtgcgggagctctcctatgacatggaggact 399
                |||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 26848612 tggatgaaggaggtgcgcgagctctcctacgacatcgaggact 26848570



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 357      tggatgaatgaggtgcgggagctctcctatgacatggaggact 399
                |||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 26847826 tggatgaaggaggtgcgcgagctctcctacgacatcgaggact 26847868



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 365      tgaggtgcgggagctctcctatgacatggaggac 398
                |||||| |||||||| ||||||||||||||||||
Sbjct: 28030089 tgaggtccgggagctgtcctatgacatggaggac 28030056



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 357     tggatgaatgaggtgcgggagctctcctatgacatggaggact 399
               |||||||| || | ||| ||||| |||||||||||||||||||
Sbjct: 6362695 tggatgaaggatgcgcgcgagctgtcctatgacatggaggact 6362737
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 357      tggatgaatgaggtgcgggagctctcctatgacatggaggact 399
                |||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 27175665 tggatgaaggaggtgcgcgagctctcctacgacatcgaggact 27175623



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 357      tggatgaatgaggtgcgggagctctcctatgacatggaggact 399
                |||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct: 27174879 tggatgaaggaggtgcgcgagctctcctacgacatcgaggact 27174921



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 365      tgaggtgcgggagctctcctatgacatggaggac 398
                |||||| |||||||| ||||||||||||||||||
Sbjct: 28008903 tgaggtccgggagctgtcctatgacatggaggac 28008936



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 357     tggatgaatgaggtgcgggagctctcctatgacatggaggact 399
               |||||||| || | ||| ||||| |||||||||||||||||||
Sbjct: 6429162 tggatgaaggatgcgcgcgagctgtcctatgacatggaggact 6429204
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>ref|XM_482051.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2787

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 306 tttcttctcaagatgtcagaggatgaggatcctgatg 342
           |||||||| |||||||||||||| ||| |||||||||
Sbjct: 151 tttcttctgaagatgtcagaggaagagaatcctgatg 187
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>ref|XM_482041.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1422

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 366 gaggtgcgggagctctcctatgacatggaggac 398
           |||||||||||||||||||| ||||| ||||||
Sbjct: 883 gaggtgcgggagctctcctacgacatcgaggac 915
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>ref|XM_480601.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2808

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 382 cctatgacatggaggactccaccgatgacttcatgca 418
           |||||||||| ||||||| || |||||||||||||||
Sbjct: 242 cctatgacatcgaggactgcatcgatgacttcatgca 278
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>ref|XM_480600.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3143

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 382 cctatgacatggaggactccaccgatgacttcatgca 418
           |||||||||| ||||||| || |||||||||||||||
Sbjct: 470 cctatgacatcgaggactgcatcgatgacttcatgca 506
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 306      tttcttctcaagatgtcagaggatgaggatcctgatg 342
                |||||||| |||||||||||||| ||| |||||||||
Sbjct: 17444876 tttcttctgaagatgtcagaggaagagaatcctgatg 17444912



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 366      gaggtgcgggagctctcctatgacatggaggac 398
                |||||||||||||||||||| ||||| ||||||
Sbjct: 17373084 gaggtgcgggagctctcctacgacatcgaggac 17373052



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                    
Query: 382     cctatgacatggaggactccaccgatgacttcatgca 418
               |||||||||| ||||||| || |||||||||||||||
Sbjct: 6131955 cctatgacatcgaggactgcatcgatgacttcatgca 6131991



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                    
Query: 382     cctatgacatggaggactccaccgatgacttcatgca 418
               |||||||||| ||||||| || |||||||||||||||
Sbjct: 6121690 cctatgacatcgaggactgcatcgatgacttcatgca 6121726



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 303      gcgtttcttctcaagatgtcagaggatgaggatcctgatg 342
                ||||| |||||||| ||||||||||| ||| |||||||||
Sbjct: 17420303 gcgttccttctcaatatgtcagaggaggagaatcctgatg 17420342



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 372     cgggagctctcctatgacatggaggac 398
               |||||||| ||||||||||||||||||
Sbjct: 4145364 cgggagctgtcctatgacatggaggac 4145338



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 370      tgcgggagctctcctatgacatggaggact 399
                |||||||||| ||||||||||| |||||||
Sbjct: 19690403 tgcgggagctatcctatgacattgaggact 19690374



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 372      cgggagctctcctatgacatggagga 397
                |||||||| |||||||||||||||||
Sbjct: 18338997 cgggagctgtcctatgacatggagga 18339022



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 373     gggagctctcctatgacatggaggac 398
               ||||||| ||||||||||||||||||
Sbjct: 4099929 gggagctgtcctatgacatggaggac 4099954
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>dbj|AP004647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1267_E11
          Length = 117073

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 366   gaggtgcgggagctctcctatgacatggaggac 398
             |||||||||||||||||||| ||||| ||||||
Sbjct: 56708 gaggtgcgggagctctcctacgacatcgaggac 56676



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 303    gcgtttcttctcaagatgtcagaggatgaggatcctgatg 342
              ||||| |||||||| ||||||||||| ||| |||||||||
Sbjct: 103927 gcgttccttctcaatatgtcagaggaggagaatcctgatg 103966
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>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0486F07
          Length = 154926

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 382   cctatgacatggaggactccaccgatgacttcatgca 418
             |||||||||| ||||||| || |||||||||||||||
Sbjct: 87972 cctatgacatcgaggactgcatcgatgacttcatgca 88008



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 382   cctatgacatggaggactccaccgatgacttcatgca 418
             |||||||||| ||||||| || |||||||||||||||
Sbjct: 77707 cctatgacatcgaggactgcatcgatgacttcatgca 77743
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>dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0690C12
          Length = 139693

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 306   tttcttctcaagatgtcagaggatgaggatcctgatg 342
             |||||||| |||||||||||||| ||| |||||||||
Sbjct: 55721 tttcttctgaagatgtcagaggaagagaatcctgatg 55757



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 303   gcgtttcttctcaagatgtcagaggatgaggatcctgatg 342
             ||||| |||||||| ||||||||||| ||| |||||||||
Sbjct: 31148 gcgttccttctcaatatgtcagaggaggagaatcctgatg 31187
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>dbj|AK119306.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-F09, full
           insert sequence
          Length = 3143

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 382 cctatgacatggaggactccaccgatgacttcatgca 418
           |||||||||| ||||||| || |||||||||||||||
Sbjct: 470 cctatgacatcgaggactgcatcgatgacttcatgca 506
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>ref|XM_482045.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2730

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 303 gcgtttcttctcaagatgtcagaggatgaggatcctgatg 342
           ||||| |||||||| ||||||||||| ||| |||||||||
Sbjct: 148 gcgttccttctcaatatgtcagaggaggagaatcctgatg 187
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>ref|XM_480291.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3126

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 372 cgggagctctcctatgacatggaggac 398
           |||||||| ||||||||||||||||||
Sbjct: 208 cgggagctgtcctatgacatggaggac 234
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>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0052C16, complete sequence
          Length = 137872

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 357   tggatgaatgaggtgcgggagctctcctatgacatggaggact 399
             |||||||| || | ||| ||||| |||||||||||||||||||
Sbjct: 34089 tggatgaaggatgcgcgcgagctgtcctatgacatggaggact 34131
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>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C03,
              complete sequence
          Length = 157178

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 357    tggatgaatgaggtgcgggagctctcctatgacatggaggact 399
              |||||||| || | ||| ||||| |||||||||||||||||||
Sbjct: 145973 tggatgaaggatgcgcgcgagctgtcctatgacatggaggact 146015
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>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1590_E05
          Length = 148205

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 372   cgggagctctcctatgacatggaggac 398
             |||||||| ||||||||||||||||||
Sbjct: 44987 cgggagctgtcctatgacatggaggac 44961
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>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0458D06
          Length = 166038

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 372    cgggagctctcctatgacatggaggac 398
              |||||||| ||||||||||||||||||
Sbjct: 138477 cgggagctgtcctatgacatggaggac 138451



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 373   gggagctctcctatgacatggaggac 398
             ||||||| ||||||||||||||||||
Sbjct: 93042 gggagctgtcctatgacatggaggac 93067
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>ref|XM_482374.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 500

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 370 tgcgggagctctcctatgacatggaggact 399
           |||||||||| ||||||||||| |||||||
Sbjct: 168 tgcgggagctatcctatgacattgaggact 139
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>ref|XM_482373.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3843

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 370 tgcgggagctctcctatgacatggaggact 399
           |||||||||| ||||||||||| |||||||
Sbjct: 932 tgcgggagctatcctatgacattgaggact 961
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>ref|XM_482172.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3378

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 372 cgggagctctcctatgacatggagga 397
           |||||||| |||||||||||||||||
Sbjct: 335 cgggagctgtcctatgacatggagga 360
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>ref|XM_482171.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3534

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 372 cgggagctctcctatgacatggagga 397
           |||||||| |||||||||||||||||
Sbjct: 375 cgggagctgtcctatgacatggagga 400
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>ref|XM_480286.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2946

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 373 gggagctctcctatgacatggaggac 398
           ||||||| ||||||||||||||||||
Sbjct: 209 gggagctgtcctatgacatggaggac 234
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>gb|AC111128.24| Mus musculus chromosome 18, clone RP23-338I7, complete sequence
          Length = 209784

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 373  gggagctctcctatgacatggaggac 398
            |||||||||||||||| |||||||||
Sbjct: 6075 gggagctctcctatgagatggaggac 6100
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>gb|AC121576.2| Mus musculus BAC clone RP23-244D21 from 18, complete sequence
          Length = 158243

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 373   gggagctctcctatgacatggaggac 398
             |||||||||||||||| |||||||||
Sbjct: 44388 gggagctctcctatgagatggaggac 44363
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>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0007M04
          Length = 176293

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 370   tgcgggagctctcctatgacatggaggact 399
             |||||||||| ||||||||||| |||||||
Sbjct: 19354 tgcgggagctatcctatgacattgaggact 19325
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>dbj|AP005502.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0473F05
          Length = 140575

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 372   cgggagctctcctatgacatggagga 397
             |||||||| |||||||||||||||||
Sbjct: 25166 cgggagctgtcctatgacatggagga 25191
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>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0042B03
          Length = 167669

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 370    tgcgggagctctcctatgacatggaggact 399
              |||||||||| ||||||||||| |||||||
Sbjct: 165963 tgcgggagctatcctatgacattgaggact 165934
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>dbj|AK103311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125G18, full
           insert sequence
          Length = 3534

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 372 cgggagctctcctatgacatggagga 397
           |||||||| |||||||||||||||||
Sbjct: 375 cgggagctgtcctatgacatggagga 400
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>dbj|AK071467.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098J02, full
           insert sequence
          Length = 655

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 370 tgcgggagctctcctatgacatggaggact 399
           |||||||||| ||||||||||| |||||||
Sbjct: 323 tgcgggagctatcctatgacattgaggact 294
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>dbj|AK066779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077A22, full
           insert sequence
          Length = 3378

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 372 cgggagctctcctatgacatggagga 397
           |||||||| |||||||||||||||||
Sbjct: 335 cgggagctgtcctatgacatggagga 360
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>gb|AC133461.12| Mus musculus chromosome 15, clone RP23-52B2, complete sequence
          Length = 176450

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    cgacaggagccttgaaaccag 201
              |||||||||||||||||||||
Sbjct: 119508 cgacaggagccttgaaaccag 119528
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>emb|BX883049.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 8/11
          Length = 349476

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 165    gctctggtgagtgcagcgacaggag 189
              |||||||||||||||| ||||||||
Sbjct: 284228 gctctggtgagtgcagggacaggag 284204
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>gb|AC107772.19| Mus musculus chromosome 15, clone RP23-102L5, complete sequence
          Length = 194704

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 289    tcactgccatggaagcgtttcttctcaa 316
              |||||| ||| |||||||||||||||||
Sbjct: 168468 tcactgacatagaagcgtttcttctcaa 168495
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>gb|AC009738.3| Drosophila melanogaster clone BACR02J10, complete sequence
          Length = 158491

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   ctggagaagctcggcgctct 223
             ||||||||||||||||||||
Sbjct: 21742 ctggagaagctcggcgctct 21723
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>gb|AC147676.10| Canis Familiaris, clone XX-25H12, complete sequence
          Length = 203436

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    gtcagaggatgaggatcctg 339
              ||||||||||||||||||||
Sbjct: 184659 gtcagaggatgaggatcctg 184640
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 98      accaccttcacaaatcacaa 117
               ||||||||||||||||||||
Sbjct: 7599433 accaccttcacaaatcacaa 7599414
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>gb|AC121938.3| Mus musculus BAC clone RP24-208D21 from chromosome 6, complete sequence
          Length = 144353

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    gctctcctatgacatggagg 396
              ||||||||||||||||||||
Sbjct: 132765 gctctcctatgacatggagg 132746
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>emb|AL732372.15| Human DNA sequence from clone RP4-669L17 on chromosome 1 Contains five
             novel genes, two novel pseudogenes and the gene for a
             novel protein similar to the olfactory receptor family,
             complete sequence
          Length = 153649

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 92871 gccagatggcttcttggaga 92852
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>emb|AL627309.15| Human DNA sequence from clone RP11-34P13 on chromosome 1 Contains a
             pseudogene similar to part of DEAD/H box polypeptide 11
             (CHL1-like helicase homolog, S. cerevisiae) (DDX11), two
             novel pseudogenes, nine novel genes, two novel proteins
             similar to the olfactory receptor family, a capicua
             homolog (Drosophila) (CIC) pseudogene and two CpG islands,
             complete sequence
          Length = 166904

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 87797 gccagatggcttcttggaga 87816
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>emb|AL606534.15| Human DNA sequence from clone RP11-261C10 on chromosome 1 Contains four
             novel genes, the 5' end of a novel gene and the 3' end of
             the gene for KARP-1-binding protein (KAB), complete
             sequence
          Length = 183541

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 31184 gccagatggcttcttggaga 31203
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>emb|AL672310.3| Human DNA sequence from clone RP11-226I21 on chromosome 6 Contains
             putative novel gene, complete sequence
          Length = 53890

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 38756 gccagatggcttcttggaga 38737
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>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0096L14, from chromosome 3, complete sequence
          Length = 131142

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     accaccttcacaaatcacaa 117
              ||||||||||||||||||||
Sbjct: 115857 accaccttcacaaatcacaa 115876
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>gb|AC182391.3| Pan troglodytes BAC clone CH251-510H16 from chromosome 1, complete
             sequence
          Length = 188995

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 68593 gccagatggcttcttggaga 68612
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>gb|AY113487.1| Drosophila melanogaster RE46170 full insert cDNA
          Length = 559

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 204 ctggagaagctcggcgctct 223
           ||||||||||||||||||||
Sbjct: 313 ctggagaagctcggcgctct 332
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>gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, complete sequence
          Length = 189411

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 443    gccagatggcttcttggaga 462
              ||||||||||||||||||||
Sbjct: 166786 gccagatggcttcttggaga 166805
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>ref|NM_137598.2| Drosophila melanogaster Odorant-binding protein 56a CG11797-RA
           (Obp56a), mRNA
          Length = 550

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 204 ctggagaagctcggcgctct 223
           ||||||||||||||||||||
Sbjct: 315 ctggagaagctcggcgctct 334
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>gb|AC096762.3| Homo sapiens BAC clone RP11-621I20 from 4, complete sequence
          Length = 195937

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    gccagatggcttcttggaga 462
              ||||||||||||||||||||
Sbjct: 195297 gccagatggcttcttggaga 195278
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>gb|AC092670.2| Homo sapiens BAC clone RP11-586D5 from 4, complete sequence
          Length = 157951

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  gccagatggcttcttggaga 462
            ||||||||||||||||||||
Sbjct: 1360 gccagatggcttcttggaga 1341
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>gb|AY071723.1| Drosophila melanogaster RH38644 full length cDNA
          Length = 562

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 204 ctggagaagctcggcgctct 223
           ||||||||||||||||||||
Sbjct: 314 ctggagaagctcggcgctct 333
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 98      accaccttcacaaatcacaa 117
               ||||||||||||||||||||
Sbjct: 7597268 accaccttcacaaatcacaa 7597249
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>gb|AC012005.4|AC012005 Homo sapiens clone RP11-533E23, complete sequence
          Length = 189557

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    gccagatggcttcttggaga 462
              ||||||||||||||||||||
Sbjct: 123638 gccagatggcttcttggaga 123619
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>gb|AC138393.2| Homo sapiens chromosome 1 clone RP11-504P24, complete sequence
          Length = 184644

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 16966 gccagatggcttcttggaga 16985
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>gb|AC136309.9| Homo sapiens chromosome 11, clone RP11-242C5, complete sequence
          Length = 150642

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 31528 gccagatggcttcttggaga 31547
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>gb|AC006328.5|AC006328 Homo sapiens BAC clone RP11-102O5 from Y, complete sequence
          Length = 177769

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 16938 gccagatggcttcttggaga 16957
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>gb|AC005627.2|AC005627 Homo sapiens PAC clone RP4-577P23 from 1, complete sequence
          Length = 137304

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 84344 gccagatggcttcttggaga 84325
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 443     gccagatggcttcttggaga 462
               ||||||||||||||||||||
Sbjct: 3539289 gccagatggcttcttggaga 3539308



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 443     gccagatggcttcttggaga 462
               ||||||||||||||||||||
Sbjct: 2509089 gccagatggcttcttggaga 2509070
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>gb|AC131281.7| Homo sapiens chromosome 8, clone RP11-585F1, complete sequence
          Length = 120139

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 94480 gccagatggcttcttggaga 94461
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>gb|AF282056.1|AF282056 Homo sapiens clone 2qtel_edc17iR sequence
          Length = 756

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 gccagatggcttcttggaga 462
           ||||||||||||||||||||
Sbjct: 202 gccagatggcttcttggaga 221
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>gb|AC138033.1| Homo sapiens chromosome 5 clone XXcos-B22C66, complete sequence
          Length = 38954

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 19885 gccagatggcttcttggaga 19904
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>gb|AC137934.1| Homo sapiens chromosome 16 clone XXcos-yA11c16, complete sequence
          Length = 35141

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 15412 gccagatggcttcttggaga 15393
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>gb|AC114498.2| Homo sapiens chromosome 1 clone RP5-857K21, complete sequence
          Length = 121664

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 58510 gccagatggcttcttggaga 58529
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>gb|AC130223.2| Homo sapiens cosmid clone XXcos-2003C17 from 2, complete sequence
          Length = 16515

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  gccagatggcttcttggaga 462
            ||||||||||||||||||||
Sbjct: 9461 gccagatggcttcttggaga 9442
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>gb|AC134873.2| Homo sapiens cosmid clone XXcos-2003C15 from 2, complete sequence
          Length = 36966

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  gccagatggcttcttggaga 462
            ||||||||||||||||||||
Sbjct: 4035 gccagatggcttcttggaga 4054
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>emb|BX649379.10| Human DNA sequence from clone RP5-1040D10 on chromosome 1, complete
             sequence
          Length = 93321

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 34921 gccagatggcttcttggaga 34902
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>gb|AC004908.1|AC004908 Homo sapiens PAC clone RP5-855D21, complete sequence
          Length = 138251

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  gccagatggcttcttggaga 462
            ||||||||||||||||||||
Sbjct: 2578 gccagatggcttcttggaga 2597
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>gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55 of 73 of the complete
              sequence
          Length = 248096

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    ctggagaagctcggcgctct 223
              ||||||||||||||||||||
Sbjct: 242486 ctggagaagctcggcgctct 242505
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>dbj|AP006222.1| Homo sapiens genomic DNA, chromosome Un, clone:CMC-68E4, telomere
             region, complete sequence
          Length = 40302

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   gccagatggcttcttggaga 462
             ||||||||||||||||||||
Sbjct: 17228 gccagatggcttcttggaga 17247
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>gb|AC004307.1|AC004307 Drosophila melanogaster DNA sequence (P1 DS02074 (D199)), complete
            sequence
          Length = 30848

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  ctggagaagctcggcgctct 223
            ||||||||||||||||||||
Sbjct: 4153 ctggagaagctcggcgctct 4134


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,397,612
Number of Sequences: 3902068
Number of extensions: 3397612
Number of successful extensions: 66214
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65855
Number of HSP's gapped (non-prelim): 359
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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