ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38c02 |
|---|---|
| Clone Library Name | barley_pub |
>AKH2_MAIZE (P49080) Bifunctional aspartokinase/homoserine dehydrogenase 2,| chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 917 Score = 131 bits (330), Expect = 6e-31 Identities = 74/126 (58%), Positives = 86/126 (68%), Gaps = 5/126 (3%) Frame = +3 Query: 78 MRSLAVASPVPTAAAHRR-RLRPSASGREVISQCLKCEINQDRPLGA-LRLG---GNLPR 242 M+ LAV+ +P AAA R R R S+S RE + QC K E++QD LG LR+G G+L R Sbjct: 1 MQGLAVSCQLPPAAAAARWRPRASSSNREAVLQCWKYELSQDHYLGGPLRIGQSQGSLHR 60 Query: 243 HGSKNLLTPXXXXXXXXXXXXXTYLPKGDMWSVHKFGGTCMGTPQRIQNVADVVLGDSSE 422 H S N L P TYLPKGDMWSVHKFGGTCMGTP+RIQ VA++VLGDSSE Sbjct: 61 HRSTNFLRPAAAAISVEQDEVNTYLPKGDMWSVHKFGGTCMGTPKRIQCVANIVLGDSSE 120 Query: 423 RKLIIV 440 RKLIIV Sbjct: 121 RKLIIV 126
>AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydrogenase 1,| chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 920 Score = 110 bits (276), Expect = 1e-24 Identities = 66/129 (51%), Positives = 76/129 (58%), Gaps = 8/129 (6%) Frame = +3 Query: 78 MRSLAVASPVPTAAAHRRR---LRPSASGRE-VISQCLKCEINQDRPLGALRLGGNLPR- 242 MRSL VAS P AA RR L P+A+GR+ +C + E QD G+ LPR Sbjct: 1 MRSLTVASRHPGAAFSTRRRPLLHPAAAGRDSTFQRCWRWEKTQDSSFGSSLRTSRLPRT 60 Query: 243 -HGS--KNLLTPXXXXXXXXXXXXXTYLPKGDMWSVHKFGGTCMGTPQRIQNVADVVLGD 413 HG KNLL P LPKGDMWSVHKFGGTCMGT +RI NVAD+VL D Sbjct: 61 VHGDILKNLLAPTAGAVSVEQAEAIADLPKGDMWSVHKFGGTCMGTSERIHNVADIVLRD 120 Query: 414 SSERKLIIV 440 SERKL++V Sbjct: 121 PSERKLVVV 129
>AKH_DAUCA (P37142) Bifunctional aspartokinase/homoserine dehydrogenase,| chloroplast precursor (AK-HD) (AK-HSDH) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (Fragment) Length = 921 Score = 68.9 bits (167), Expect = 5e-12 Identities = 27/43 (62%), Positives = 39/43 (90%) Frame = +3 Query: 312 YLPKGDMWSVHKFGGTCMGTPQRIQNVADVVLGDSSERKLIIV 440 +LP+G MWS+HKFGGTC+G+ +RI+NVA++V+ D SERKL++V Sbjct: 85 HLPRGAMWSIHKFGGTCVGSSERIRNVAEIVVEDDSERKLVVV 127
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 31.6 bits (70), Expect = 0.91 Identities = 20/49 (40%), Positives = 26/49 (53%) Frame = +3 Query: 3 SCSLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSA 149 S S R PP P R +SP R+ R L+ P+A+ RRR RPS+ Sbjct: 358 SSSSSSRSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPSS 401
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/48 (41%), Positives = 25/48 (52%) Frame = +3 Query: 3 SCSLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPS 146 S S R PP P R +SP R+ R L+ P+A+ RRR RPS Sbjct: 360 SSSSSSRSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPS 402
>CAPP_BURPS (Q63W75) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 31.2 bits (69), Expect = 1.2 Identities = 25/69 (36%), Positives = 31/69 (44%) Frame = +3 Query: 3 SCSLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLK 182 S S P H+EPP A RAA P R++ A PT AA +P RE Sbjct: 16 SSSSAPAHAEPP---ARRAAKPARKLDGAAARPLAPTNAA---SAKPQGRTRE------- 62 Query: 183 CEINQDRPL 209 ++DRPL Sbjct: 63 ---DKDRPL 68
>CAPP_BURMA (Q62LC1) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 31.2 bits (69), Expect = 1.2 Identities = 25/69 (36%), Positives = 31/69 (44%) Frame = +3 Query: 3 SCSLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLK 182 S S P H+EPP A RAA P R++ A PT AA +P RE Sbjct: 16 SSSSAPAHAEPP---ARRAAKPARKLDGAAARPLAPTNAA---SAKPQGRTRE------- 62 Query: 183 CEINQDRPL 209 ++DRPL Sbjct: 63 ---DKDRPL 68
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/48 (41%), Positives = 25/48 (52%) Frame = +3 Query: 3 SCSLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPS 146 S S R PP P R +SP R+ R L+ P+A+ RRR RPS Sbjct: 360 SSSSSSRSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPS 402
>AK2_BACSU (P08495) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 408 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +3 Query: 339 VHKFGGTCMGTPQRIQNVADVVLGDSSERKLIIV 440 V KFGGT +G+ ++IQN A+ + + + ++V Sbjct: 5 VQKFGGTSVGSVEKIQNAANRAIAEKQKGHQVVV 38
>AK2_BACST (P53553) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 407 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/34 (41%), Positives = 24/34 (70%) Frame = +3 Query: 339 VHKFGGTCMGTPQRIQNVADVVLGDSSERKLIIV 440 V KFGGT +G+ +RIQ+VA+ V+ + + ++V Sbjct: 5 VQKFGGTSVGSIERIQHVANRVIEEVQKGNDVVV 38
>LIPA2_HUMAN (O75334) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 30.8 bits (68), Expect = 1.6 Identities = 22/72 (30%), Positives = 29/72 (40%) Frame = +3 Query: 24 HSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEINQDR 203 HS P L P SP REM + V + HRR++ +KCE + Sbjct: 722 HSTPKLTPR----SPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPP 777 Query: 204 PLGALRLGGNLP 239 ALR+ LP Sbjct: 778 TPRALRMTHTLP 789
>AK_HELPY (O25827) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 405 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +3 Query: 330 MWSVHKFGGTCMGTPQRIQNVADVVL 407 M V K+GGT MG+ +RI NVA VL Sbjct: 1 MLIVQKYGGTSMGSIERIHNVAQRVL 26
>AK_HELPJ (Q9ZJZ7) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 405 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +3 Query: 330 MWSVHKFGGTCMGTPQRIQNVADVVL 407 M V K+GGT MG+ +RI NVA VL Sbjct: 1 MLIVQKYGGTSMGSIERIHNVAQRVL 26
>AK2_BACSG (Q59229) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 411 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +3 Query: 339 VHKFGGTCMGTPQRIQNVADVVLGDSSERKLIIV 440 V KFGGT +G+ +RI NVA+ V+ + ++V Sbjct: 5 VQKFGGTSVGSVERILNVANRVIEEKKNGNDVVV 38
>NNMT_HUMAN (P40261) Nicotinamide N-methyltransferase (EC 2.1.1.1)| Length = 264 Score = 30.4 bits (67), Expect = 2.0 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +3 Query: 156 REVISQCLKCEINQDRPLGALRL 224 R+ + Q LKC++ Q +PLGA+ L Sbjct: 132 RQAVKQVLKCDVTQSQPLGAVPL 154
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.4 bits (67), Expect = 2.0 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -1 Query: 158 PTGGGRPEPPSMGGGCRDGARDGE 87 P GG RP+ GG RDG RDG+ Sbjct: 233 PGGGPRPQGQGRPGGQRDGQRDGQ 256
>AK_PSEAE (O69077) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 412 Score = 30.0 bits (66), Expect = 2.7 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = +3 Query: 339 VHKFGGTCMGTPQRIQNVADVV 404 V KFGGT +GT +RI+ VA+ V Sbjct: 5 VQKFGGTSVGTVERIEQVAEKV 26
>LIPA2_MOUSE (Q8BSS9) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 29.6 bits (65), Expect = 3.5 Identities = 21/72 (29%), Positives = 29/72 (40%) Frame = +3 Query: 24 HSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEINQDR 203 HS P L P SP REM + V + HRR++ +KCE + Sbjct: 722 HSTPKLTPR----SPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPP 777 Query: 204 PLGALRLGGNLP 239 A+R+ LP Sbjct: 778 TPRAVRMTHTLP 789
>SRR1L_MOUSE (Q8K2M3) SRR1-like protein (Fragment)| Length = 243 Score = 29.6 bits (65), Expect = 3.5 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 23/84 (27%) Frame = +3 Query: 57 AASPRREMRSLAV---------ASPVPTAAAHRRRLRPS----------ASGREVISQCL 179 A +PRR R+ A P A RRLR + +S E I++CL Sbjct: 5 AVAPRRRKRAAGRRPRPGEGPRAEPDADGEAVLRRLREAEEDLRISDFCSSALETITECL 64 Query: 180 KCEINQDRP----LGALRLGGNLP 239 + ++ Q +P LG L LG +LP Sbjct: 65 RKQLEQLQPLTEALGRLHLGSSLP 88
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -1 Query: 149 GGRPEPPSMGGGCRDGARDGEAPH 78 GG P+PP GGG G R AP+ Sbjct: 220 GGHPKPPHRGGGEPRGGRQHHAPY 243
>NNMT_MOUSE (O55239) Nicotinamide N-methyltransferase (EC 2.1.1.1)| Length = 264 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 156 REVISQCLKCEINQDRPLGALRL 224 R I Q LKC++ Q +PLG + L Sbjct: 132 RRAIKQVLKCDVTQSQPLGGVSL 154
>PRAX_MOUSE (O55103) Periaxin| Length = 1391 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 Query: 69 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 173 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKAEAVKGPVPAAPARRRLQLPRLRVREVAEE 201
>VGLY_PIARV (P03540) Glycoprotein polyprotein [Contains: Glycoprotein G1;| Glycoprotein G2] Length = 503 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +1 Query: 226 EEICQDMVLRICSHQLLQPFQLNKLKSVLIFQKVICGLCTSSVAL 360 EE C M L + ++ QLN S+ +F+K I GL + S+ + Sbjct: 321 EEFCDTMRLFDFNQNAIKTLQLNVENSLNLFKKTINGLISDSLVI 365
>VP4A_FOWPV (Q9J559) Major core protein P4a| Length = 891 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -1 Query: 416 RVTKNYISNILNSLRCSHASATELVHRPH 330 RV+K Y++N+L CS + A +L+ H Sbjct: 555 RVSKRYLTNMLQKASCSQSEAEKLLSSAH 583
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 155 TGGGRPEPPSMGGGCRDGARDGEAPH 78 T GG P+PP GGG G R P+ Sbjct: 226 TPGGHPKPPHRGGGEPRGGRQHHPPY 251
>PRAX_HUMAN (Q9BXM0) Periaxin| Length = 1461 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 Query: 69 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 173 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKAEAVKGPVPAAPARRRLQLPRLRVREVAEE 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,935,847 Number of Sequences: 219361 Number of extensions: 929866 Number of successful extensions: 3171 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3007 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3166 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
