ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38b11 |
|---|---|
| Clone Library Name | barley_pub |
>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex| component Sec8) Length = 1053 Score = 173 bits (438), Expect = 2e-43 Identities = 83/113 (73%), Positives = 98/113 (86%) Frame = +3 Query: 87 GIFDGLPIPPDKSYLKEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGEIQFLKEQSDLI 266 GIF+GLP+P DK+YL+E L+RIDE WAAARFDSLPHVVHILTSKDR+ +I LKEQSD++ Sbjct: 2 GIFNGLPVPSDKTYLREELARIDESWAAARFDSLPHVVHILTSKDREADIHILKEQSDVV 61 Query: 267 EDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKGEMAEAQKLLGRK 425 E+VVDEVVHAYH GFNKAIQNYS ILRLFSES E I LK ++AEA++ LG + Sbjct: 62 EEVVDEVVHAYHGGFNKAIQNYSQILRLFSESTEKIGDLKHDLAEAKQSLGAR 114
>SEC8_NEUCR (Q9HE88) Probable exocyst complex component sec8| Length = 1111 Score = 33.5 bits (75), Expect = 0.25 Identities = 16/69 (23%), Positives = 33/69 (47%) Frame = +3 Query: 210 TSKDRDGEIQFLKEQSDLIEDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKG 389 +S R E + ++ +++ + +VH +H GFN +I + I S + + LK Sbjct: 115 SSVGRAHEYRNFQQTHQFLQESLKNIVHDHHQGFNSSIGTFHKIQGSIQSSQKKVRALKE 174 Query: 390 EMAEAQKLL 416 +A ++ L Sbjct: 175 SLAASKTAL 183
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 33.5 bits (75), Expect = 0.25 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +2 Query: 8 YSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 172 YS S + AP P P PA+ RPP +P RA AD RR G+G Sbjct: 891 YSCCSAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 33.5 bits (75), Expect = 0.25 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +2 Query: 8 YSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 172 YS S + AP P P PA+ RPP +P RA AD RR G+G Sbjct: 891 YSCCSAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 32.7 bits (73), Expect = 0.42 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +2 Query: 5 GYSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 130 G P +P AP P S L VG PP+ +R PP A ++LP Sbjct: 1994 GSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2035
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 32.7 bits (73), Expect = 0.42 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +2 Query: 5 GYSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 130 G P +P AP P S L VG PP+ +R PP A ++LP Sbjct: 1997 GSLPPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2038
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 31.6 bits (70), Expect = 0.93 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +2 Query: 5 GYSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 130 G P +P AP P S L VG PP +R PP A ++LP Sbjct: 1998 GSLPPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2039
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 31.6 bits (70), Expect = 0.93 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +2 Query: 5 GYSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 130 G P +P AP P S L VG PP +R PP A ++LP Sbjct: 1995 GSLPPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2036
>MSG5_YEAST (P38590) Tyrosine-protein phosphatase MSG5 (EC 3.1.3.48)| Length = 489 Score = 31.2 bits (69), Expect = 1.2 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 12/90 (13%) Frame = +3 Query: 33 RLSPGPASPSVTMNRHRRGIFDGLP-------IPPD---KSYLKEGLSRIDEGWAAARFD 182 ++SP P PS++M R I+ LP + P KS +S++ + F Sbjct: 83 KVSPRPTPPSLSMRRSEASIYT-LPTSLKNRTVSPSVYTKSSTVSSISKLSSSSPLSSFS 141 Query: 183 SLPHV--VHILTSKDRDGEIQFLKEQSDLI 266 PH+ VH L+ K +D +++ ++ +S I Sbjct: 142 EKPHLNRVHSLSVKTKDLKLKGIRGRSQTI 171
>YAYB_SCHPO (Q10218) Hypothetical protein C4H3.11c in chromosome I| Length = 783 Score = 31.2 bits (69), Expect = 1.2 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Frame = +3 Query: 132 KEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGE-IQFLKEQSDLIEDVVDEVVHAYHHG 308 K G S +D+G AA+R+D+ + K+R E ++ L+EQ + I+ V V+ Sbjct: 349 KLGESNVDDGMAASRYDT------VKREKERLSEHLKSLQEQYEHIQSVYKNVL------ 396 Query: 309 FNKAIQNYSHILRLFSESAESITGLKGEMAEAQKLLGRKIST 434 + S+I+RL ++ +E+ E+ ++L K+ T Sbjct: 397 ----LDRESYIMRLGNKISEN-----NELLNENRVLKEKLQT 429
>SYFA_HALSA (Q9HMK4) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 502 Score = 30.8 bits (68), Expect = 1.6 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +2 Query: 344 AAVQRVRREHHRPQGGDGRGPKAAWEED 427 A V+RV R H G DG G + W+ED Sbjct: 300 ALVERVERAHREGAGDDGDGYHSPWDED 327
>FA84A_BOVIN (Q3ZCA1) Protein FAM84A| Length = 297 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +3 Query: 99 GLPIPPDKSYLKEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGEIQFLKEQSDLIED 272 G P + YLK L+ D ARF SL ++ D G ++ L+E +DL++D Sbjct: 240 GTQPPQQQYYLKVHLA--DNKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDD 295
>VGLC_BHV1C (P14378) Glycoprotein GIII precursor| Length = 521 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Frame = +2 Query: 11 SPVSPDLAP---LPGSRLAVGNDEPP-------PAWHLRRPPNSARQILPEGRAVADRRG 160 +P SPD P PG+ VG EPP P + PP P G A R G Sbjct: 57 TPNSPDATPEDSTPGATTPVGTPEPPSVSEHDPPVTNSTPPPAPPEDGRPGGAGNASRDG 116 Query: 161 MGSG 172 SG Sbjct: 117 RPSG 120
>REB1_KLULA (Q05950) DNA-binding protein REB1 (QBP)| Length = 595 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +3 Query: 120 KSYLKEGLSRIDEGWAAARFDSLPHVVHIL----TSKDRDGEIQFLKEQSDLIEDVVD 281 ++Y+K G +R W+ + L +V+H + ++ DGE +K+ S IED D Sbjct: 379 RNYVKCGPNRAANKWSVEEEEKLKNVIHQMLDNASTAYEDGEDDEMKDSSTKIEDSGD 436
>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)| Length = 1251 Score = 29.3 bits (64), Expect = 4.6 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +2 Query: 5 GYSPVSPDLAPLPGSRLAVGNDEP 76 GY P+SP +AP+P SR G+ P Sbjct: 611 GYMPMSPGVAPVPSSRKGSGDYMP 634
>BCB1_ARATH (Q07488) Blue copper protein precursor (Blue copper-binding| protein) (AtBCB) (Stellacyanin) (Phytocyanin 1) Length = 196 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/53 (30%), Positives = 20/53 (37%) Frame = +2 Query: 2 TGYSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVADRRG 160 TG + P PGS + G PP A P S+ P G A + G Sbjct: 129 TGGATPGAGATPAPGSTPSTGGTTPPTAGGTTTPSGSSGTTTPAGNAASSLGG 181
>GCSH_PEA (P16048) Glycine cleavage system H protein, mitochondrial precursor| Length = 165 Score = 28.5 bits (62), Expect = 7.9 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Frame = +3 Query: 12 AQSLQISRLSPGPASPSVTMNRHRRGIFDGLPIPPDKSYLKEGLSRIDEGWAAARFDSLP 191 A +L++S S SP+ +++R + DGL P ++K S G D L Sbjct: 11 ANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLG 70 Query: 192 HVVHI--------LTSKDRDGEIQFLKEQSDLIEDVVDEVV 290 VV + +T G ++ +K SD+ + EV+ Sbjct: 71 EVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVI 111
>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Activated in prostate cancer protein) Length = 2839 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Frame = -2 Query: 159 PRRSATALPSGKICLAELGGRRRCHAGGG-----SSLPTARRDPGRGAR 28 PRRS P+G + E GG R C G G + P++ D G A+ Sbjct: 2518 PRRSPGP-PAGGVSCPEKGGNRACPGGSGPKTSAAETPSSASDTGEAAQ 2565
>DNAK1_SYNPX (Q7U6R7) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat| shock 70 kDa protein 1) (HSP70-1) Length = 662 Score = 28.5 bits (62), Expect = 7.9 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = -3 Query: 158 LVDPRQPFLQV-RFVWRNWEAVEDATPVAVHRYRRRGGTRGEAR 30 ++ PR F + RFV R+WE +ED++ +AV Y R RG+ R Sbjct: 59 VLSPRNTFSNLKRFVGRDWEELEDSS-LAV-PYTVRANDRGQVR 100
>OST3A_HUMAN (Q9Y663) Heparan sulfate glucosamine 3-O-sulfotransferase 3A1 (EC| 2.8.2.30) (Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A1) (Heparan sulfate 3-O-sulfotransferase 3A1) (h3-OST-3A) Length = 406 Score = 28.5 bits (62), Expect = 7.9 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 6/46 (13%) Frame = +2 Query: 308 LQQGHTELLPYPAAVQRVRR------EHHRPQGGDGRGPKAAWEED 427 L G EL +PAA QR R RP G +AAWEE+ Sbjct: 71 LAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEAAWEEE 116
>ATG13_ASPFU (Q4WHN5) Autophagy-related protein 13| Length = 958 Score = 28.5 bits (62), Expect = 7.9 Identities = 20/49 (40%), Positives = 27/49 (55%) Frame = +2 Query: 2 TGYSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVA 148 TG SP+S L +R +V + PP+ RRP ++AR P GRA A Sbjct: 355 TGASPISA----LRAARESVTSSPSPPSSASRRPLSAARAA-PTGRAAA 398
>CD123_YEAST (Q05791) Cell division cycle protein 123| Length = 360 Score = 28.5 bits (62), Expect = 7.9 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +3 Query: 201 HILTSKDRD-GEIQFLKEQSDLIEDVVDEVVH 293 HI+ + RD +L E SD +D++DE+VH Sbjct: 206 HIVGATQRDLNYYDYLDELSDTFKDLIDEIVH 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,805,720 Number of Sequences: 219361 Number of extensions: 1384516 Number of successful extensions: 5470 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5241 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5464 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
