>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0023F01, complete sequence
          Length = 145009

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                             
Query: 168   gcagccccgcaccgcacgccgccgcaccacggggcacctcccctccaa 215
             |||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct: 76270 gcagccccgctccgcgcgccgccgcaccacgggccacctcccctccaa 76317



 Score = 46.1 bits (23), Expect = 0.072
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 289   aggagggtgaggcgccggcgagagcttgctggcaaccccgcagaggg 335
             |||||||||||||| ||||| ||||| || |||||| |||| |||||
Sbjct: 76391 aggagggtgaggcggcggcgggagctcgcgggcaacaccgcggaggg 76437

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                                
Query: 168      gcagccccgcaccgcacgccgccgcaccacggggcacctcccctccaa 215
                |||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct: 26513450 gcagccccgctccgcgcgccgccgcaccacgggccacctcccctccaa 26513403



 Score = 46.1 bits (23), Expect = 0.072
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 289      aggagggtgaggcgccggcgagagcttgctggcaaccccgcagaggg 335
                |||||||||||||| ||||| ||||| || |||||| |||| |||||
Sbjct: 26513329 aggagggtgaggcggcggcgggagctcgcgggcaacaccgcggaggg 26513283

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                                
Query: 168      gcagccccgcaccgcacgccgccgcaccacggggcacctcccctccaa 215
                |||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct: 26838714 gcagccccgctccgcgcgccgccgcaccacgggccacctcccctccaa 26838667



 Score = 46.1 bits (23), Expect = 0.072
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 289      aggagggtgaggcgccggcgagagcttgctggcaaccccgcagaggg 335
                |||||||||||||| ||||| ||||| || |||||| |||| |||||
Sbjct: 26838593 aggagggtgaggcggcggcgggagctcgcgggcaacaccgcggaggg 26838547

>gb|AY907537.1| Uncultured bacterial symbiont of Discodermia dissoluta polyketide
             synthesis gene cluster, partial sequence
          Length = 124311

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 155   gcggccgcttccagcagccccgc 177
             |||||||||||||||||||||||
Sbjct: 29376 gcggccgcttccagcagccccgc 29354



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 157   ggccgcttccagcagccccgc 177
             |||||||||||||||||||||
Sbjct: 49495 ggccgcttccagcagccccgc 49475

>emb|AL591390.8| Mouse DNA sequence from clone RP23-355L10 on chromosome 11, complete
             sequence
          Length = 186134

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 8     cctaaaccctcacaaacccttcc 30
             |||||||||||||||||||||||
Sbjct: 76779 cctaaaccctcacaaacccttcc 76757

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 193    accacggggcacctcccctccaagcgccg 221
              ||||||||| |||||| ||||||||||||
Sbjct: 621525 accacggggaacctccgctccaagcgccg 621553

>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     gcccccgccaccgcggcagc 79
              ||||||||||||||||||||
Sbjct: 135989 gcccccgccaccgcggcagc 135970

>gb|AC093363.12| Mus musculus chromosome 7, clone RP23-60O3, complete sequence
          Length = 254081

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    ggccaggctcccgaggaggg 266
              ||||||||||||||||||||
Sbjct: 116091 ggccaggctcccgaggaggg 116072

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 174     ccgcaccgcacgccgccgcaccac 197
               |||| |||||||||||||||||||
Sbjct: 1272573 ccgcgccgcacgccgccgcaccac 1272550

>ref|XM_415827.1| PREDICTED: Gallus gallus similar to myosin 18A isoform a; myosin
           18A; myosin containing PDZ domain (LOC417581), mRNA
          Length = 7860

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 60  gcccccgccaccgcggcagctgga 83
           ||||||| ||||||||||||||||
Sbjct: 576 gcccccggcaccgcggcagctgga 599

>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 49    ggcggcgcggtgcccccgccaccg 72
             ||||||| ||||||||||||||||
Sbjct: 53536 ggcggcgaggtgcccccgccaccg 53559

>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 157     ggccgcttccagcagccccg 176
               ||||||||||||||||||||
Sbjct: 1402114 ggccgcttccagcagccccg 1402133



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    ggccgcttccagcagccccg 176
              ||||||||||||||||||||
Sbjct: 914859 ggccgcttccagcagccccg 914878

>gb|L49337.2|RHMMOTB Sinorhizobium meliloti FlgC (flgC) gene, partial cds; FliE (fliE),
            FlgG (flgG), FlgA (flgA), FlgI (flgI), FlgH (flgH), FliL
            (fliL), FliP (fliP), FlaA (flaA), FlaB (flaB), FlaC
            (flaC), FlaD (flaD), MotB (motB), MotC (motC), MotD
            (motD), and transcriptional regulator genes, complete
            cds; and unknown genes
          Length = 19824

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ggccgcttccagcagccccg 176
            ||||||||||||||||||||
Sbjct: 9304 ggccgcttccagcagccccg 9285

>dbj|AK158245.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
           library, clone:F930045J08 product:hypothetical
           Proline-rich region profile containing protein, full
           insert sequence
          Length = 2335

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 ggccaggctcccgaggaggg 266
           ||||||||||||||||||||
Sbjct: 236 ggccaggctcccgaggaggg 255

>dbj|AK165809.1| Mus musculus 16 days neonate male medulla oblongata cDNA, RIKEN
           full-length enriched library, clone:G630090C24
           product:hypothetical Proline-rich region profile
           containing protein, full insert sequence
          Length = 2551

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 ggccaggctcccgaggaggg 266
           ||||||||||||||||||||
Sbjct: 233 ggccaggctcccgaggaggg 252

>dbj|AK160932.1| Mus musculus 18 days pregnant adult female placenta and extra
           embryonic tissue cDNA, RIKEN full-length enriched
           library, clone:3830612G08 product:hypothetical
           Proline-rich region profile containing protein, full
           insert sequence
          Length = 2165

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 ggccaggctcccgaggaggg 266
           ||||||||||||||||||||
Sbjct: 158 ggccaggctcccgaggaggg 177

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 49       ggcggcgcggtgcccccgccaccg 72
                ||||||| ||||||||||||||||
Sbjct: 24932951 ggcggcgaggtgcccccgccaccg 24932974

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 45       tggcggcggcgcggtgcccccgcc 68
                ||||||||||| ||||||||||||
Sbjct: 39798805 tggcggcggcgaggtgcccccgcc 39798828

>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0470A12
          Length = 185095

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     tggcggcggcgcggtgcccccgcc 68
              ||||||||||| ||||||||||||
Sbjct: 149704 tggcggcggcgaggtgcccccgcc 149727

>ref|NM_001033206.1| Mus musculus PWWP domain containing 2 (Pwwp2), mRNA
          Length = 2335

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 ggccaggctcccgaggaggg 266
           ||||||||||||||||||||
Sbjct: 236 ggccaggctcccgaggaggg 255

>gb|AF091043.1|AF091043 Coturnix coturnix japonica POU-box protein brain-2 mRNA, complete cds
          Length = 1466

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  cacgccgccgcaccacgggg 201
            ||||||||||||||||||||
Sbjct: 1279 cacgccgccgcaccacgggg 1298

>gb|AF102868.1| Hordeum vulgare subsp. vulgare beta-D-glucan exohydrolase isoenzyme
            ExoI mRNA, complete cds
          Length = 2161

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 175  cgcaccgcacgccgccgcac 194
            ||||||||||||||||||||
Sbjct: 1649 cgcaccgcacgccgccgcac 1630

>gb|U40823.1|ABU40823 Azospirillum brasilense galactose binding protein regulator (gbpR)
           gene and sugar binding protein precursor (chvE) gene,
           complete cds
          Length = 2358

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 42  ggctggcggcggcgcggtgc 61
           ||||||||||||||||||||
Sbjct: 197 ggctggcggcggcgcggtgc 178

>gb|U95961.1|MMU95961 Mus musculus Snail zinc finger protein (Sna) gene, promoter region
           and partial cds
          Length = 987

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  aatggctggcggcggcgcgg 58
           ||||||||||||||||||||
Sbjct: 729 aatggctggcggcggcgcgg 710

>emb|AL589870.30| Mouse DNA sequence from clone RP23-118A2 on chromosome 2, complete
             sequence
          Length = 202686

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    aatggctggcggcggcgcgg 58
             ||||||||||||||||||||
Sbjct: 94164 aatggctggcggcggcgcgg 94145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,112,354
Number of Sequences: 3902068
Number of extensions: 2112354
Number of successful extensions: 41997
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41721
Number of HSP's gapped (non-prelim): 276
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)