ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38b07 |
|---|---|
| Clone Library Name | barley_pub |
>AMY_THECU (P29750) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 605 Score = 49.7 bits (117), Expect = 3e-06 Identities = 27/65 (41%), Positives = 32/65 (49%) Frame = +1 Query: 154 TVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFT 333 TVT F T +GQ + + GS P LGSW QG+ L G VW G V + AG Sbjct: 505 TVTARFHATVTTWYGQEVAVVGSIPELGSWQPAQGVRLR-TDSGTYPVWSGAVDLPAGVG 563 Query: 334 CEYSY 348 EY Y Sbjct: 564 FEYKY 568
>AMYG_ASPOR (P36914) Glucoamylase precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) Length = 612 Score = 48.1 bits (113), Expect = 9e-06 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Frame = +1 Query: 154 TVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSL-SPVHQGNALVWCGQVSVAAGF 330 TV+V F + T +G+S+ I GS LGSW+ +L + + + +W G +++ AG Sbjct: 511 TVSVTFAVKATTVYGESIKIVGSISQLGSWNPSSATALNADSYTTDNPLWTGTINLPAGQ 570 Query: 331 TCEYSYHVVDDHKNVLRWESGEKKKLVVP 417 + EY + V + + WES +K VP Sbjct: 571 SFEYKFIRVQN--GAVTWESDPNRKYTVP 597
>AMYG_NEUCR (P14804) Glucoamylase precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) Length = 626 Score = 44.3 bits (103), Expect = 1e-04 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = +1 Query: 157 VTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLS-PVHQGNALVWCGQVSVAAGFT 333 V V F T +GQ++ + GS ALG+W+ G++LS + + +W +++ G + Sbjct: 526 VLVTFNEKVTTSYGQTVKVVGSIAALGNWAPASGVTLSAKQYSSSNPLWSTTIALPQGTS 585 Query: 334 CEYSYHVVDDHKNVLRWESGEKKKLVV 414 +Y Y VV+ +V +WE+ + V Sbjct: 586 FKYKYVVVNSDGSV-KWENDPDRSYAV 611
>AMY_STRLM (P09794) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 566 Score = 44.3 bits (103), Expect = 1e-04 Identities = 27/90 (30%), Positives = 39/90 (43%) Frame = +1 Query: 145 GKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAA 324 G + F + T WG+++ + G ALG+W + L L P VW V +AA Sbjct: 467 GTGQTSASFHVNATTAWGENIYVTGDQAALGNWDPARALKLDPAAYP---VWKLDVPLAA 523 Query: 325 GFTCEYSYHVVDDHKNVLRWESGEKKKLVV 414 G +Y Y + D WESG + V Sbjct: 524 GTPFQYKY-LRKDAAGKAVWESGANRTATV 552
>AMY_STRGR (P30270) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 566 Score = 44.3 bits (103), Expect = 1e-04 Identities = 27/90 (30%), Positives = 39/90 (43%) Frame = +1 Query: 145 GKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAA 324 G + F + T WG+++ + G ALG+W + L L P VW V +AA Sbjct: 467 GTGQTSASFHVNATTAWGENIYVTGDQAALGNWDPARALKLDPAAYP---VWKLDVPLAA 523 Query: 325 GFTCEYSYHVVDDHKNVLRWESGEKKKLVV 414 G +Y Y + D WESG + V Sbjct: 524 GTPFQYKY-LRKDAAGKAVWESGANRTATV 552
>AMY_STRVL (P22998) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 569 Score = 43.5 bits (101), Expect = 2e-04 Identities = 29/87 (33%), Positives = 39/87 (44%) Frame = +1 Query: 169 FKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYSY 348 F + T GQ++ + G+ LG+W+ L L P VW V + AG + EY Y Sbjct: 478 FNVTATTVVGQNIYVTGNRAELGNWAPASALKLDP---ATYPVWKLTVGLPAGTSFEYKY 534 Query: 349 HVVDDHKNVLRWESGEKKKLVVPEGVQ 429 D NV WESG + VP Q Sbjct: 535 IRKDAAGNV-TWESGANRTATVPASGQ 560
>CDGT_BREBE (O30565) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 692 Score = 37.0 bits (84), Expect = 0.022 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 4/98 (4%) Frame = +1 Query: 136 EEMGKNTVTVIFKLPYYT-QWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNAL---VWC 303 E + N V+V F + T G ++ I G+ LG+W + ++ P+ W Sbjct: 587 EVLSGNQVSVRFAVNNATTNSGTNVYIVGNVSELGNWDPNK--AIGPMFNQVMYKYPTWY 644 Query: 304 GQVSVAAGFTCEYSYHVVDDHKNVLRWESGEKKKLVVP 417 +SV AG EY Y + DH + W+SG + P Sbjct: 645 YDISVPAGKNLEYKY-IKKDHNGNVTWQSGNNRTYTSP 681
>K1434_HUMAN (Q9NPB8) Protein KIAA1434| Length = 672 Score = 36.2 bits (82), Expect = 0.037 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = +1 Query: 196 GQSLVIAGSAPALGSWSVKQGLSLSPVHQ-GNALVWCGQVSVAAGFTCEYSY 348 G+ I GS ALG+W+ + ++L P + G +++W + ++ G + +Y Y Sbjct: 17 GEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRY 68
>CDGT_BACST (P31797) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 711 Score = 35.4 bits (80), Expect = 0.063 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Frame = +1 Query: 187 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 351 T GQ++ I G+ LG+W + ++ P+ N +V W VSV G T E+ + Sbjct: 622 TNLGQNIYIVGNVYELGNWDTSK--AIGPMF--NQVVYSYPTWYIDVSVPEGKTIEFKFI 677 Query: 352 VVDDHKNVLRWESGEKKKLVVP 417 D NV WESG P Sbjct: 678 KKDSQGNV-TWESGSNHVYTTP 698
>CDGT_BACSS (P31747) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 718 Score = 33.9 bits (76), Expect = 0.18 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Frame = +1 Query: 187 TQWGQSLVIAGSAPALGSWSVKQGLSLSP-----VHQGNALVWCGQVSVAAGFTCEYSYH 351 T GQ++ + G+ LG+WS ++ P +HQ W VSV AG E+ + Sbjct: 630 TTLGQNIYLTGNVAELGNWST-GSTAIGPAFNQVIHQ--YPTWYYDVSVPAGKELEFKF- 685 Query: 352 VVDDHKNVLRWESGEKKKLVVP 417 + + + WE G K P Sbjct: 686 -FKKNGSTITWEGGSNHKFTTP 706
>CDGT1_BACCI (P30920) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 718 Score = 33.9 bits (76), Expect = 0.18 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Frame = +1 Query: 187 TQWGQSLVIAGSAPALGSWSVKQGLSLSP-----VHQGNALVWCGQVSVAAGFTCEYSYH 351 T GQ+L + G+ LG+WS ++ P +HQ W VSV AG E+ + Sbjct: 630 TTLGQNLYLTGNVAELGNWST-GSTAIGPAFNQVIHQ--YPTWYYDVSVPAGKQLEFKF- 685 Query: 352 VVDDHKNVLRWESGEKKKLVVP 417 + + + WESG P Sbjct: 686 -FKKNGSTITWESGSNHTFTTP 706
>CDGT_BACS8 (P17692) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) (Raw-starch-digesting amylase) Length = 713 Score = 33.9 bits (76), Expect = 0.18 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = +1 Query: 187 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 351 T GQ+L + G+ LG+W + ++ P++ N +V W VSV AG T E+ + Sbjct: 625 TALGQNLYLTGNVSELGNWDPAK--AIGPMY--NQVVYQYPNWYYDVSVPAGKTIEFKF- 679 Query: 352 VVDDHKNVLRWESGEKKKLVVP 417 + + + WE G P Sbjct: 680 -LKKQGSTVTWEGGSNHTFTAP 700
>CDGT_BAC11 (P30921) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 713 Score = 33.9 bits (76), Expect = 0.18 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%) Frame = +1 Query: 187 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 351 T GQ++ +AGS LG+W + ++ P++ N ++ W V+V AG T E+ + Sbjct: 625 TALGQNVYLAGSVSELGNWDPAK--AIGPLY--NQVIYQYPTWYYDVTVPAGKTIEFKF- 679 Query: 352 VVDDHKNVLRWESGEKKKLVVP 417 + + + WE G P Sbjct: 680 -LKKQGSTVTWEGGSNHTFTAP 700
>CDGT2_BACCI (P43379) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 713 Score = 33.9 bits (76), Expect = 0.18 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = +1 Query: 187 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 351 T GQ++ + GS LG+W + ++ P++ N +V W VSV AG T E+ + Sbjct: 625 TALGQNVYLTGSVSELGNWDPAK--AIGPMY--NQVVYQYPNWYYDVSVPAGKTIEFKF- 679 Query: 352 VVDDHKNVLRWESGEKKKLVVP 417 + + + WE G P Sbjct: 680 -LKKQGSTVTWEGGSNHTFTAP 700
>AMYB_THETU (P19584) Thermophilic beta-amylase precursor (EC 3.2.1.2)| (1,4-alpha-D-glucan maltohydrolase) Length = 551 Score = 33.9 bits (76), Expect = 0.18 Identities = 21/77 (27%), Positives = 33/77 (42%) Frame = +1 Query: 187 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYSYHVVDDH 366 T +GQ++ I GS LG+W+ + P N W +++ G ++ +D Sbjct: 465 TYYGQNVYIVGSTSDLGNWNTT--YARGPASCPNYPTWTITLNLLPGEQIQFKAVKIDSS 522 Query: 367 KNVLRWESGEKKKLVVP 417 NV WE G VP Sbjct: 523 GNV-TWEGGSNHTYTVP 538
>CDGT_BACS0 (P05618) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 713 Score = 33.5 bits (75), Expect = 0.24 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = +1 Query: 187 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 351 T GQ++ + G+ LG+W ++ P++ N +V W VSV AG T E+ + Sbjct: 625 TALGQNVFLTGNVSELGNWDPNN--AIGPMY--NQVVYQYPTWYYDVSVPAGQTIEFKF- 679 Query: 352 VVDDHKNVLRWESGEKKKLVVP 417 + + + WE G + P Sbjct: 680 -LKKQGSTVTWEGGANRTFTTP 700
>CDGT_BACS3 (P09121) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 712 Score = 33.5 bits (75), Expect = 0.24 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = +1 Query: 187 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSYH 351 T GQ++ + G+ LG+W ++ P++ N +V W VSV AG T E+ + Sbjct: 624 TALGQNVFLTGNVSELGNWDPNN--AIGPMY--NQVVYQYPTWYYDVSVPAGQTIEFKF- 678 Query: 352 VVDDHKNVLRWESGEKKKLVVP 417 + + + WE G + P Sbjct: 679 -LKKQGSTVTWEGGANRTFTTP 699
>CDGT_KLEOX (P08704) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 655 Score = 32.7 bits (73), Expect = 0.41 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Frame = +1 Query: 184 YTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEY---SYHV 354 YT GQS+ I G+ P LG W + + + +SP W + + + E+ + Sbjct: 570 YTISGQSVYIIGNIPQLGGWDLTKAVKISPTQYPQ---WSASLELPSDLNVEWKCVKRNE 626 Query: 355 VDDHKNVLRWESG 393 + NV W+SG Sbjct: 627 TNPTANV-EWQSG 638
>RHO_STRLI (P52157) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 707 Score = 29.3 bits (64), Expect(2) = 1.0 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Frame = -3 Query: 330 EAGGDRNLATPDQRVPLVNRA--QGQPLLDAPGPERRRGAGDDEALP 196 +A + + P Q P VN + Q P DAP RRR A D P Sbjct: 134 KAAAQQQIEIPGQPTPKVNASAEQAAPADDAPSERRRRRATSDAGSP 180 Score = 20.8 bits (42), Expect(2) = 1.0 Identities = 9/16 (56%), Positives = 10/16 (62%) Frame = -1 Query: 131 SRDGANGGHGRGWDRR 84 +R A GG GR DRR Sbjct: 215 ARSDAEGGDGRRRDRR 230
>CDGT2_PAEMA (P31835) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 713 Score = 31.2 bits (69), Expect = 1.2 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Frame = +1 Query: 157 VTVIFKLPYYTQ-WGQSLVIAGSAPALGSWSVKQGLSLSPVH---QGNALVWCGQVSVAA 324 VTV FK+ T GQ++ + G+ LG+W+ ++ P++ + + W VSV A Sbjct: 614 VTVRFKVNNATTALGQNVYLTGNVAELGNWTAAN--AIGPMYNQVEASYPTWYFDVSVPA 671 Query: 325 GFTCEYSYHVVDDHKNVLRWESGEKKKLVVP 417 ++ + V+ + + WE G P Sbjct: 672 NTALQFKFIKVNG--STVTWEGGNNHTFTSP 700
>ECO_DROME (Q9VS50) N-acetyltransferase eco (EC 2.3.1.-) (Establishment of| cohesion 1 homolog) (ECO1 homolog) Length = 1052 Score = 30.4 bits (67), Expect = 2.0 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Frame = +1 Query: 85 RRSHPRPWPPLAPSLLAE----EMGKNTVTVIFKLP---YYTQWGQSLVIAGSAPALGSW 243 +R HP P+APS A+ + VT+ +P +Y+ G+++ + P++ Sbjct: 376 KRQHPETSTPVAPSADADSGSPQSKMRKVTLSSSIPTMAFYSHSGEAVTKSRRRPSISKN 435 Query: 244 SVKQGLSLSP 273 S+KQ +SP Sbjct: 436 SLKQPTKISP 445
>OR6B1_HUMAN (O95007) Olfactory receptor 6B1 (Olfactory receptor 7-3) (OR7-3)| Length = 311 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = +1 Query: 229 ALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYS 345 ALGSW++ G+SL+ ++ + L +CG +V F C+ S Sbjct: 145 ALGSWAIGFGISLAKIYFISCLSFCGP-NVINHFFCDIS 182
>APBE_CHLMU (Q9PKW2) Thiamine biosynthesis lipoprotein apbE precursor| Length = 316 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/39 (25%), Positives = 20/39 (51%) Frame = +1 Query: 181 YYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV 297 YY +WG + +G P+ SW++ + +H N+ + Sbjct: 194 YYVEWGGEIKTSGKHPSGRSWAIASSATPEILHLNNSSI 232
>RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 614 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Frame = -3 Query: 318 DRNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 139 D N+A P + VP+ +A E GDDE P + R + P Sbjct: 170 DDNIAAPTEEVPIPGTKAAAAKEEADDDEEESEGGDDEEEPKAALTRSSQPSVSVRYPSS 229 Query: 138 FSE-QGRRQWR 109 FS+ QG + R Sbjct: 230 FSDHQGPEEKR 240
>QUIA_XANCJ (Q9XD78) Probable quinate dehydrogenase [Pyrroloquinoline-quinone]| (EC 1.1.99.25) Length = 790 Score = 28.9 bits (63), Expect = 5.9 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%) Frame = -3 Query: 324 GGDRNLATPDQRVPLVNRAQGQPLLDAPGP------ERRRGAGDDEALPPLRVVRQL-ED 166 GG R A DQ +NR+ G+P +PGP G G ++ L PL+V ++ Sbjct: 159 GGSR-FAALDQ----INRSNGRPAAGSPGPTTPGEIANSDGNGAEDQLTPLQVGEKVFLC 213 Query: 165 HGHRVLPHLFSEQGRRQWR 109 H L L + G++ WR Sbjct: 214 TPHNNLIALDASTGKQLWR 232
>GEMI5_HUMAN (Q8TEQ6) Gem-associated protein 5 (Gemin5)| Length = 1508 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 222 GAGDDEALPPLRVVRQLEDHGHRVLPHLFS 133 GAG+ PP RV+ +L H RV FS Sbjct: 44 GAGESPGTPPFRVIGELVGHTERVSGFTFS 73
>DTX1_HUMAN (Q86Y01) Protein deltex-1 (Deltex-1) (Deltex1) (hDTX1)| Length = 620 Score = 24.3 bits (51), Expect(2) = 9.5 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -3 Query: 273 RAQGQPLLDAPGPERRRGAGDDEALPP 193 R GQ L+ PGP+R ++PP Sbjct: 287 RTPGQNNLNRPGPQRTTSVSARASIPP 313 Score = 22.3 bits (46), Expect(2) = 9.5 Identities = 9/16 (56%), Positives = 9/16 (56%) Frame = -2 Query: 316 PKPGHTRPARSPGEPG 269 P P P RSPG PG Sbjct: 269 PAPPPGAPPRSPGAPG 284 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.134 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,820,892 Number of Sequences: 219361 Number of extensions: 1111199 Number of successful extensions: 4736 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4286 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4731 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
