ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38b06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC132833.10| Mus musculus chromosome 15, clone RP24-498G7, complete sequence Length = 154206 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 tcgctcgctcgctcctctccgg 45 |||||||||||||||||||||| Sbjct: 112266 tcgctcgctcgctcctctccgg 112287
>gb|AC108415.10| Mus musculus chromosome 15, clone RP23-341K14, complete sequence Length = 194640 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 tcgctcgctcgctcctctccgg 45 |||||||||||||||||||||| Sbjct: 32804 tcgctcgctcgctcctctccgg 32825
>gb|AC109826.4| Homo sapiens BAC clone RP11-764D5 from 2, complete sequence Length = 87746 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 324 cccctgctcctcggaccgttcggcgccccccacctgc 360 ||||||| ||||||||||| |||| || ||||||||| Sbjct: 23454 cccctgcgcctcggaccgtccggccccgcccacctgc 23490
>gb|AC096656.1| Homo sapiens BAC clone RP11-20F18 from 2, complete sequence Length = 176167 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 ctctctctcgctcgctccaca 180 ||||||||||||||||||||| Sbjct: 32250 ctctctctcgctcgctccaca 32270
>gb|AC168212.7| Mus musculus chromosome 18, clone RP23-290N19, complete sequence Length = 197719 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tcgctcgctcgctcctctcc 43 |||||||||||||||||||| Sbjct: 152925 tcgctcgctcgctcctctcc 152944
>ref|XM_469962.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1796 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 cggcgccccccacctgctcgtcgg 367 |||||||| ||||||||||||||| Sbjct: 302 cggcgcccaccacctgctcgtcgg 279
>ref|NM_000405.3| Homo sapiens GM2 ganglioside activator (GM2A), mRNA Length = 2521 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ccctctcttccttggacccc 296 |||||||||||||||||||| Sbjct: 2373 ccctctcttccttggacccc 2354
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtgcgccgcgccgatctcct 64 |||||||||||||||||||| Sbjct: 482321 gtgcgccgcgccgatctcct 482340
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cccagctcgtgcgcgccgcg 155 |||||||||||||||||||| Sbjct: 714127 cccagctcgtgcgcgccgcg 714108
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 cggcgccccccacctgctcgtcgg 367 |||||||| ||||||||||||||| Sbjct: 27495 cggcgcccaccacctgctcgtcgg 27518
>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence Length = 188992 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gaatataaaggactgaaatg 402 |||||||||||||||||||| Sbjct: 81772 gaatataaaggactgaaatg 81791
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cccagctcgtgcgcgccgcg 155 |||||||||||||||||||| Sbjct: 1237008 cccagctcgtgcgcgccgcg 1236989
>gb|AY395814.1| Leptonycteris curasoae 12S ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 2606 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gttttattttaggtgaatat 388 |||||||||||||||||||| Sbjct: 1101 gttttattttaggtgaatat 1082
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 cggcgccccccacctgctcgtcgg 367 |||||||| ||||||||||||||| Sbjct: 32716412 cggcgcccaccacctgctcgtcgg 32716389
>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence Length = 178925 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gaatataaaggactgaaatg 402 |||||||||||||||||||| Sbjct: 58564 gaatataaaggactgaaatg 58583
>ref|XM_538893.2| PREDICTED: Canis familiaris similar to Proto-oncogene serine/threonine-protein kinase Pim-1 (LOC481772), mRNA Length = 2472 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 252 cgccggcgtgtgcgcacgccgccagccc 279 ||||||||||| ||| |||||||||||| Sbjct: 471 cgccggcgtgtccgcccgccgccagccc 498
>gb|AC130538.4| Mus musculus BAC clone RP23-450E2 from chromosome 7, complete sequence Length = 169082 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ttttattttaggtgaatata 389 |||||||||||||||||||| Sbjct: 60915 ttttattttaggtgaatata 60896
>gb|AC127323.3| Mus musculus BAC clone RP23-242D19 from 18, complete sequence Length = 208152 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ttattttaggtgaatataaa 391 |||||||||||||||||||| Sbjct: 167119 ttattttaggtgaatataaa 167138
>ref|XM_860856.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 1A (SWI- like) isoform c, transcript variant 3 (LOC487352), mRNA Length = 7836 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tcgctcgctcgctcctctcc 43 |||||||||||||||||||| Sbjct: 225 tcgctcgctcgctcctctcc 206
>ref|XM_860834.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 1A (SWI- like) isoform c, transcript variant 2 (LOC487352), mRNA Length = 7595 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tcgctcgctcgctcctctcc 43 |||||||||||||||||||| Sbjct: 225 tcgctcgctcgctcctctcc 206
>ref|XM_847453.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 1A (SWI- like) isoform c, transcript variant 1 (LOC487352), mRNA Length = 8487 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tcgctcgctcgctcctctcc 43 |||||||||||||||||||| Sbjct: 225 tcgctcgctcgctcctctcc 206
>ref|XM_662363.1| Cryptosporidium hominis TU502 adapter-related protein complex 2 alpha 1 subunit (Chro.60242) partial mRNA Length = 3294 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 gttttattttaggtgaatat 388 |||||||||||||||||||| Sbjct: 1916 gttttattttaggtgaatat 1935
>gb|AY098743.2| Oryza sativa (japonica cultivar-group) globulin-like protein mRNA, complete cds Length = 1779 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 cggcgccccccacctgctcgtcgg 367 |||||||| ||||||||||||||| Sbjct: 268 cggcgcccaccacctgctcgtcgg 245
>emb|AL353695.7| Human DNA sequence from clone RP11-17L7 on chromosome 9 Contains the 5' end of the FUBP3 gene for far upstream element (FUSE) binding protein 3 (FBP3) and a CpG island, complete sequence Length = 84661 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ctctctctcgctcgctccac 179 |||||||||||||||||||| Sbjct: 22337 ctctctctcgctcgctccac 22318
>emb|AL139142.10| Human DNA sequence from clone RP3-436N22 on chromosome 1q24.1-25.3 Contains the PRDX6 gene for peroxiredoxin 6, gene MGC43026, a novel gene, the 3' end of a novel gene (FLJ45235) and two CpG islands, complete sequence Length = 159771 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctctctccacccccgcaacc 20 |||||||||||||||||||| Sbjct: 134642 ctctctccacccccgcaacc 134623
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 cccagctcgtgcgcgccgcg 155 |||||||||||||||||||| Sbjct: 1139920 cccagctcgtgcgcgccgcg 1139901
>emb|BX538351.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4 Length = 307050 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gttttattttaggtgaatat 388 |||||||||||||||||||| Sbjct: 53458 gttttattttaggtgaatat 53439
>gb|AC069435.19| Homo sapiens 3 BAC RP11-384L1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111861 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ccctctcttccttggacccc 296 |||||||||||||||||||| Sbjct: 9478 ccctctcttccttggacccc 9459
>emb|CR626644.1| full-length cDNA clone CS0DL003YG14 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2338 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ccctctcttccttggacccc 296 |||||||||||||||||||| Sbjct: 2262 ccctctcttccttggacccc 2243
>dbj|AK127170.1| Homo sapiens cDNA FLJ45235 fis, clone BRCAN2025093 Length = 2670 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctctctccacccccgcaacc 20 |||||||||||||||||||| Sbjct: 2231 ctctctccacccccgcaacc 2250
>ref|NM_198493.1| Homo sapiens ankyrin repeat domain 45 (ANKRD45), mRNA Length = 2670 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctctctccacccccgcaacc 20 |||||||||||||||||||| Sbjct: 2231 ctctctccacccccgcaacc 2250
>gb|AC008385.7| Homo sapiens chromosome 5 clone CTC-224D3, complete sequence Length = 151712 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ccctctcttccttggacccc 296 |||||||||||||||||||| Sbjct: 90268 ccctctcttccttggacccc 90287
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 atctcgcgccgccggagccg 199 |||||||||||||||||||| Sbjct: 588478 atctcgcgccgccggagccg 588497
>gb|AC011342.5| Homo sapiens chromosome 5 clone CTC-276H5, complete sequence Length = 120584 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ccctctcttccttggacccc 296 |||||||||||||||||||| Sbjct: 9562 ccctctcttccttggacccc 9581
>ref|XM_627567.1| Cryptosporidium parvum Iowa II adaptin AP complex subunit alpha; ARM repeats (cgd6_2070), partial mRNA Length = 3321 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 gttttattttaggtgaatat 388 |||||||||||||||||||| Sbjct: 1946 gttttattttaggtgaatat 1965
>gb|AC155297.2| Mus musculus BAC clone RP24-238D1 from chromosome 13, complete sequence Length = 174487 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 tattttaggtgaatataaaggact 396 |||||||||| ||||||||||||| Sbjct: 69792 tattttaggtaaatataaaggact 69769
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 cggcgccccccacctgctcgtcgg 367 |||||||| ||||||||||||||| Sbjct: 32806922 cggcgcccaccacctgctcgtcgg 32806899
>gb|AE009582.1| Brucella melitensis 16M chromosome I, section 139 of 195 of the complete sequence Length = 11614 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gtgcgccgcgccgatctcct 64 |||||||||||||||||||| Sbjct: 2109 gtgcgccgcgccgatctcct 2090
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cgcgccgccggagccggacc 203 |||||||||||||||||||| Sbjct: 1893745 cgcgccgccggagccggacc 1893764
>gb|AC140366.2| Mus musculus BAC clone RP24-225H21 from chromosome 7, complete sequence Length = 145270 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ttttattttaggtgaatata 389 |||||||||||||||||||| Sbjct: 111049 ttttattttaggtgaatata 111030
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtgcgccgcgccgatctcct 64 |||||||||||||||||||| Sbjct: 504157 gtgcgccgcgccgatctcct 504176
>dbj|AB125172.1| Macaca fascicularis GM2A mRNA for GM2 ganglioside activator protein, complete cds Length = 1900 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ccctctcttccttggacccc 296 |||||||||||||||||||| Sbjct: 1751 ccctctcttccttggacccc 1732
>emb|AL929167.10| Mouse DNA sequence from clone RP23-5F14 on chromosome 2, complete sequence Length = 148751 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 cggagttttattttaggtga 384 |||||||||||||||||||| Sbjct: 63876 cggagttttattttaggtga 63857
>dbj|AK121667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K06, full insert sequence Length = 1702 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 cggcgccccccacctgctcgtcgg 367 |||||||| ||||||||||||||| Sbjct: 303 cggcgcccaccacctgctcgtcgg 280
>gb|BC009273.2| Homo sapiens GM2 ganglioside activator, mRNA (cDNA clone MGC:10462 IMAGE:4053681), complete cds Length = 2413 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ccctctcttccttggacccc 296 |||||||||||||||||||| Sbjct: 2265 ccctctcttccttggacccc 2246
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcgcgccgccggagccggac 202 |||||||||||||||||||| Sbjct: 3190186 tcgcgccgccggagccggac 3190167
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtgcgccgcgccgatctcct 64 |||||||||||||||||||| Sbjct: 500452 gtgcgccgcgccgatctcct 500471
>emb|X62078.1|HSGM2APT H.sapiens mRNA for GM2 activator protein Length = 2436 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 ccctctcttccttggacccc 296 |||||||||||||||||||| Sbjct: 2298 ccctctcttccttggacccc 2279 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,581,869 Number of Sequences: 3902068 Number of extensions: 2581869 Number of successful extensions: 51524 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50617 Number of HSP's gapped (non-prelim): 907 length of query: 402 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 380 effective length of database: 17,147,199,772 effective search space: 6515935913360 effective search space used: 6515935913360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
