ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38b05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D07, full insert sequence Length = 3618 Score = 93.7 bits (47), Expect = 3e-16 Identities = 89/103 (86%) Strand = Plus / Plus Query: 190 cgatgggttccctcacaagttcttggatgatgaacttgtgtggcagtccagtatgctcca 249 ||||||||||||||||||||||||||| ||||||||||||||| || ||| | ||||||| Sbjct: 176 cgatgggttccctcacaagttcttggacgatgaacttgtgtgggagcccaatttgctcca 235 Query: 250 accaagatgtactctcatgcgcgttcaaggaagtattcgactc 292 | | |||||| | ||||| || ||||||||| |||| ||||| Sbjct: 236 agaaggatgtagtttcatgtgctttcaaggaaatattggactc 278
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 208 gttcttggatgatgaacttgtgtggcagtccagtatgctccaaccaagatgtactctcat 267 ||||||||| ||||||||||||||| || ||| | |||||||| | |||||| | |||| Sbjct: 26322 gttcttggacgatgaacttgtgtgggagcccaatttgctccaagaaggatgtagtttcat 26381 Query: 268 gcgcgttcaaggaagtattcgactc 292 | || ||||||||| |||| ||||| Sbjct: 26382 gtgctttcaaggaaatattggactc 26406 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 cgatgggttccctcacaagtt 210 ||||||||||||||||||||| Sbjct: 26146 cgatgggttccctcacaagtt 26166
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 208 gttcttggatgatgaacttgtgtggcagtccagtatgctccaaccaagatgtactctcat 267 ||||||||| ||||||||||||||| || ||| | |||||||| | |||||| | |||| Sbjct: 2596082 gttcttggacgatgaacttgtgtgggagcccaatttgctccaagaaggatgtagtttcat 2596023 Query: 268 gcgcgttcaaggaagtattcgactc 292 | || ||||||||| |||| ||||| Sbjct: 2596022 gtgctttcaaggaaatattggactc 2595998 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 88 cgccgacggcgaggaggaggccgccgccgt 117 ||||| |||||| ||||||||||||||||| Sbjct: 7614793 cgccgccggcgacgaggaggccgccgccgt 7614822 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 cgatgggttccctcacaagtt 210 ||||||||||||||||||||| Sbjct: 2596258 cgatgggttccctcacaagtt 2596238 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cgccgacggcgaggaggagg 107 |||||||||||||||||||| Sbjct: 24489038 cgccgacggcgaggaggagg 24489019 Score = 40.1 bits (20), Expect = 3.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 72 aggagcccgcggtcagcgccgacggcgaggaggagg 107 ||||||||| ||| ||| ||||||||||||||||| Sbjct: 9312437 aggagcccgtcgtcggcgacgacggcgaggaggagg 9312472
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 58.0 bits (29), Expect = 2e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 208 gttcttggatgatgaacttgtgtggcagtccagtatgctccaaccaagatgtactctcat 267 ||||||||| ||||||||||||||| || ||| | |||||||| | |||||| | |||| Sbjct: 2605113 gttcttggacgatgaacttgtgtgggagcccaatttgctccaagaaggatgtagtttcat 2605054 Query: 268 gcgcgttcaaggaagtattcgactc 292 | || ||||||||| |||| ||||| Sbjct: 2605053 gtgctttcaaggaaatattggactc 2605029 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 88 cgccgacggcgaggaggaggccgccgccgt 117 ||||| |||||| ||||||||||||||||| Sbjct: 7684880 cgccgccggcgacgaggaggccgccgccgt 7684909 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 cgatgggttccctcacaagtt 210 ||||||||||||||||||||| Sbjct: 2605289 cgatgggttccctcacaagtt 2605269 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cgccgacggcgaggaggagg 107 |||||||||||||||||||| Sbjct: 24800707 cgccgacggcgaggaggagg 24800688 Score = 40.1 bits (20), Expect = 3.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 72 aggagcccgcggtcagcgccgacggcgaggaggagg 107 ||||||||| ||| ||| ||||||||||||||||| Sbjct: 9384134 aggagcccgtcgtcggcgacgacggcgaggaggagg 9384169
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Minus Query: 94 cggcgaggaggaggccgccgccgtagccg 122 |||||||||||||||||||||||| |||| Sbjct: 18101799 cggcgaggaggaggccgccgccgtcgccg 18101771
>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08 Length = 155316 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Minus Query: 94 cggcgaggaggaggccgccgccgtagccg 122 |||||||||||||||||||||||| |||| Sbjct: 94921 cggcgaggaggaggccgccgccgtcgccg 94893
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 94 cggcgaggaggaggccgccgccgt 117 |||||||||||||||||||||||| Sbjct: 1055543 cggcgaggaggaggccgccgccgt 1055520
>ref|XM_842814.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0885) partial mRNA Length = 1935 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 94 cggcgaggaggaggccgccgccgt 117 |||||||||||||||||||||||| Sbjct: 1596 cggcgaggaggaggccgccgccgt 1573
>ref|NM_183812.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 94 cggcgaggaggaggccgccgccg 116 ||||||||||||||||||||||| Sbjct: 999 cggcgaggaggaggccgccgccg 1021
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Minus Query: 94 cggcgaggaggaggccgccgccg 116 ||||||||||||||||||||||| Sbjct: 23495976 cggcgaggaggaggccgccgccg 23495954 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gccgccgccgtagccgcccg 126 |||||||||||||||||||| Sbjct: 19433435 gccgccgccgtagccgcccg 19433416 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 gcgccgacggcgaggaggag 106 |||||||||||||||||||| Sbjct: 7169177 gcgccgacggcgaggaggag 7169196
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 94 cggcgaggaggaggccgccgccg 116 ||||||||||||||||||||||| Sbjct: 12501771 cggcgaggaggaggccgccgccg 12501793
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 94 cggcgaggaggaggccgccgccg 116 ||||||||||||||||||||||| Sbjct: 13381 cggcgaggaggaggccgccgccg 13403
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 94 cggcgaggaggaggccgccgccg 116 ||||||||||||||||||||||| Sbjct: 87386 cggcgaggaggaggccgccgccg 87408
>dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0486H12 Length = 179085 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Minus Query: 94 cggcgaggaggaggccgccgccg 116 ||||||||||||||||||||||| Sbjct: 155531 cggcgaggaggaggccgccgccg 155509
>dbj|AK072067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114F06, full insert sequence Length = 1282 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 94 cggcgaggaggaggccgccgccg 116 ||||||||||||||||||||||| Sbjct: 339 cggcgaggaggaggccgccgccg 361
>dbj|AK063544.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D01, full insert sequence Length = 1274 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 94 cggcgaggaggaggccgccgccg 116 ||||||||||||||||||||||| Sbjct: 226 cggcgaggaggaggccgccgccg 248
>dbj|AK058883.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-B11, full insert sequence Length = 1144 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 94 cggcgaggaggaggccgccgccg 116 ||||||||||||||||||||||| Sbjct: 798 cggcgaggaggaggccgccgccg 820
>tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx13 gene for class III peroxidase 13 precursor, exons 1-3 Length = 9315 Score = 46.1 bits (23), Expect = 0.063 Identities = 23/23 (100%) Strand = Plus / Plus Query: 94 cggcgaggaggaggccgccgccg 116 ||||||||||||||||||||||| Sbjct: 9270 cggcgaggaggaggccgccgccg 9292
>ref|XM_469687.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2131 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 95 ggcgaggaggaggccgccgccg 116 |||||||||||||||||||||| Sbjct: 426 ggcgaggaggaggccgccgccg 405
>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11, complete sequence Length = 135993 Score = 44.1 bits (22), Expect = 0.25 Identities = 28/30 (93%) Strand = Plus / Plus Query: 88 cgccgacggcgaggaggaggccgccgccgt 117 ||||| |||||| ||||||||||||||||| Sbjct: 73879 cgccgccggcgacgaggaggccgccgccgt 73908
>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017N18, complete sequence Length = 156643 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 90 ccgacggcgaggaggaggccgc 111 |||||||||||||||||||||| Sbjct: 62329 ccgacggcgaggaggaggccgc 62350
>gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence Length = 99587 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 90 ccgacggcgaggaggaggccgc 111 |||||||||||||||||||||| Sbjct: 49663 ccgacggcgaggaggaggccgc 49684
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 95 ggcgaggaggaggccgccgccg 116 |||||||||||||||||||||| Sbjct: 30210557 ggcgaggaggaggccgccgccg 30210536 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 86 agcgccgacggcgaggaggaggccgccg 113 |||||||||||| |||||||||||||| Sbjct: 1851581 agcgccgacggcccggaggaggccgccg 1851608
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete sequence Length = 163972 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 ggcgaggaggaggccgccgccg 116 |||||||||||||||||||||| Sbjct: 13338 ggcgaggaggaggccgccgccg 13359
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 95 ggcgaggaggaggccgccgccg 116 |||||||||||||||||||||| Sbjct: 2237 ggcgaggaggaggccgccgccg 2216
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 90 ccgacggcgaggaggaggccgc 111 |||||||||||||||||||||| Sbjct: 28634537 ccgacggcgaggaggaggccgc 28634558
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 95 ggcgaggaggaggccgccgccg 116 |||||||||||||||||||||| Sbjct: 30301979 ggcgaggaggaggccgccgccg 30301958 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 86 agcgccgacggcgaggaggaggccgccg 113 |||||||||||| |||||||||||||| Sbjct: 1851579 agcgccgacggcccggaggaggccgccg 1851606
>dbj|AK064624.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-E07, full insert sequence Length = 977 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 90 ccgacggcgaggaggaggccgc 111 |||||||||||||||||||||| Sbjct: 21 ccgacggcgaggaggaggccgc 42
>ref|NM_197614.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0001O14.13), mRNA Length = 1500 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 gcgccgacggcgaggaggagg 107 ||||||||||||||||||||| Sbjct: 62 gcgccgacggcgaggaggagg 82
>gb|AY548484.1| Frog virus 3, complete genome Length = 105903 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 cgaggaggaggccgccgccgt 117 ||||||||||||||||||||| Sbjct: 74460 cgaggaggaggccgccgccgt 74480
>gb|AY150217.1| Ambystoma tigrinum stebbensi virus, complete genome Length = 106332 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 cgaggaggaggccgccgccgt 117 ||||||||||||||||||||| Sbjct: 41503 cgaggaggaggccgccgccgt 41483
>emb|AJ297529.2|PST297529 Pseudomonas stutzeri nif operon and flanking genes, strain A15101 Length = 24798 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 cagcgccgacggcgaggagga 105 ||||||||||||||||||||| Sbjct: 21164 cagcgccgacggcgaggagga 21184
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 gcgccgacggcgaggaggagg 107 ||||||||||||||||||||| Sbjct: 70533 gcgccgacggcgaggaggagg 70513 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cgaggaggaggccgccgccg 116 |||||||||||||||||||| Sbjct: 75541 cgaggaggaggccgccgccg 75560
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.98 Identities = 30/33 (90%) Strand = Plus / Minus Query: 84 tcagcgccgacggcgaggaggaggccgccgccg 116 |||||||||||| |||||| || |||||||||| Sbjct: 20117382 tcagcgccgacgacgaggacgacgccgccgccg 20117350 Score = 42.1 bits (21), Expect = 0.98 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 gcgccgacggcgaggaggaggccgc 111 |||||||||||||||||| |||||| Sbjct: 19652190 gcgccgacggcgaggaggcggccgc 19652214
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 gcgccgacggcgaggaggagg 107 ||||||||||||||||||||| Sbjct: 20808134 gcgccgacggcgaggaggagg 20808114 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cgaggaggaggccgccgccg 116 |||||||||||||||||||| Sbjct: 20813142 cgaggaggaggccgccgccg 20813161
>gb|AY211023.1| Streptomyces violaceoruber strain SANK95570 plasmid pSV2, complete sequence Length = 96742 Score = 42.1 bits (21), Expect = 0.98 Identities = 24/25 (96%) Strand = Plus / Minus Query: 102 aggaggccgccgccgtagccgcccg 126 ||||||||||||||| ||||||||| Sbjct: 26194 aggaggccgccgccgaagccgcccg 26170
>dbj|AK108497.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G12, full insert sequence Length = 937 Score = 42.1 bits (21), Expect = 0.98 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 gcgccgacggcgaggaggaggccgc 111 |||||||||||||||||| |||||| Sbjct: 623 gcgccgacggcgaggaggcggccgc 599
>dbj|AK105279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B08, full insert sequence Length = 2043 Score = 42.1 bits (21), Expect = 0.98 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 gcgccgacggcgaggaggaggccgc 111 |||||||||||||||||| |||||| Sbjct: 1634 gcgccgacggcgaggaggcggccgc 1658
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 gcgccgacggcgaggaggagg 107 ||||||||||||||||||||| Sbjct: 20819398 gcgccgacggcgaggaggagg 20819378 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cgaggaggaggccgccgccg 116 |||||||||||||||||||| Sbjct: 20824406 cgaggaggaggccgccgccg 20824425
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.98 Identities = 30/33 (90%) Strand = Plus / Minus Query: 84 tcagcgccgacggcgaggaggaggccgccgccg 116 |||||||||||| |||||| || |||||||||| Sbjct: 20043596 tcagcgccgacgacgaggacgacgccgccgccg 20043564 Score = 42.1 bits (21), Expect = 0.98 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 gcgccgacggcgaggaggaggccgc 111 |||||||||||||||||| |||||| Sbjct: 19578404 gcgccgacggcgaggaggcggccgc 19578428
>emb|AL713900.4|CNS07YQ0 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 99791 Score = 42.1 bits (21), Expect = 0.98 Identities = 30/33 (90%) Strand = Plus / Minus Query: 84 tcagcgccgacggcgaggaggaggccgccgccg 116 |||||||||||| |||||| || |||||||||| Sbjct: 97544 tcagcgccgacgacgaggacgacgccgccgccg 97512
>emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb0078B20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133659 Score = 42.1 bits (21), Expect = 0.98 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 gcgccgacggcgaggaggaggccgc 111 |||||||||||||||||| |||||| Sbjct: 74803 gcgccgacggcgaggaggcggccgc 74779
>gb|AF389451.1| Tiger frog virus, complete genome Length = 105057 Score = 42.1 bits (21), Expect = 0.98 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 cgaggaggaggccgccgccgt 117 ||||||||||||||||||||| Sbjct: 72884 cgaggaggaggccgccgccgt 72904
>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08, complete sequence Length = 138054 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 86 agcgccgacggcgaggaggaggccgccg 113 |||||||||||| |||||||||||||| Sbjct: 76443 agcgccgacggcccggaggaggccgccg 76470
>gb|AY070137.1| Homo sapiens specificity protein 3 (SP3) mRNA, complete cds Length = 3979 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 91 cgacggcgaggaggaggccgccgccgtagccg 122 ||||| |||||||||||| ||||||| ||||| Sbjct: 405 cgacgacgaggaggaggcggccgccgcagccg 436
>ref|NM_197616.1| Oryza sativa (japonica cultivar-group) putative cytochrome c-type biogenesis protein (OSJNBa0001O14.23), mRNA Length = 804 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cgaggaggaggccgccgccg 116 |||||||||||||||||||| Sbjct: 717 cgaggaggaggccgccgccg 736
>ref|XM_515917.1| PREDICTED: Pan troglodytes Sp3 transcription factor (LOC459750), mRNA Length = 2550 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 91 cgacggcgaggaggaggccgccgccgtagccg 122 ||||| |||||||||||| ||||||| ||||| Sbjct: 483 cgacgacgaggaggaggcggccgccgcagccg 514
>ref|XM_478725.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1807 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gaggaggaggccgccgccgt 117 |||||||||||||||||||| Sbjct: 1628 gaggaggaggccgccgccgt 1647
>gb|AY441957.1| Homo sapiens transcription factor SP3 large isoform (SP3) mRNA, complete cds Length = 4286 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 91 cgacggcgaggaggaggccgccgccgtagccg 122 ||||| |||||||||||| ||||||| ||||| Sbjct: 756 cgacgacgaggaggaggcggccgccgcagccg 787
>gb|AC135497.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0008E02, complete sequence Length = 152974 Score = 40.1 bits (20), Expect = 3.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 72 aggagcccgcggtcagcgccgacggcgaggaggagg 107 ||||||||| ||| ||| ||||||||||||||||| Sbjct: 2838 aggagcccgtcgtcggcgacgacggcgaggaggagg 2873
>gb|AC135499.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0031M14, complete sequence Length = 49269 Score = 40.1 bits (20), Expect = 3.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 72 aggagcccgcggtcagcgccgacggcgaggaggagg 107 ||||||||| ||| ||| ||||||||||||||||| Sbjct: 6189 aggagcccgtcgtcggcgacgacggcgaggaggagg 6154
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gcccgcggtcagcgccgacg 95 |||||||||||||||||||| Sbjct: 2104215 gcccgcggtcagcgccgacg 2104234
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 ccgacggcgaggaggaggccgccg 113 ||||||| |||||||||||||||| Sbjct: 642039 ccgacggtgaggaggaggccgccg 642062
>ref|XM_414401.1| PREDICTED: Gallus gallus similar to protein kinase (EC 2.7.1.37), cAMP-dependent, type II-alpha regulatory chain - bovine (LOC416063), mRNA Length = 2030 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cgaggaggaggccgccgccg 116 |||||||||||||||||||| Sbjct: 643 cgaggaggaggccgccgccg 624
>ref|XM_864332.1| PREDICTED: Bos taurus hypothetical protein LOC613490 (LOC613490), mRNA Length = 1283 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 gacggcgaggaggaggccgc 111 |||||||||||||||||||| Sbjct: 925 gacggcgaggaggaggccgc 944
>gb|AC091268.2| Rattus norvegicus strain Brown Norway clone RP31-536L14, complete sequence Length = 148631 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gatgggttccctcacaagttcttg 214 |||||| ||||||||||||||||| Sbjct: 85874 gatgggatccctcacaagttcttg 85851
>gb|AC104846.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0004C07, complete sequence Length = 135425 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cgccgacggcgaggaggagg 107 |||||||||||||||||||| Sbjct: 90129 cgccgacggcgaggaggagg 90110
>gb|AY394849.1| Mustela putorius furo dopamine receptor D2 (DRD2) mRNA, complete cds Length = 1332 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 gcccgccgagcccaggagct 37 |||||||||||||||||||| Sbjct: 817 gcccgccgagcccaggagct 836
>gb|BC019106.2| Homo sapiens KIAA1442 protein, mRNA (cDNA clone IMAGE:5020670), partial cds Length = 1447 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gaggccgccgccgtagccgc 123 |||||||||||||||||||| Sbjct: 184 gaggccgccgccgtagccgc 165
>ref|NM_003111.3| Homo sapiens Sp3 transcription factor (SP3), transcript variant 1, mRNA Length = 3920 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 91 cgacggcgaggaggaggccgccgccgtagccg 122 ||||| |||||||||||| ||||||| ||||| Sbjct: 389 cgacgacgaggaggaggcggccgccgcagccg 420
>ref|NM_001017371.3| Homo sapiens Sp3 transcription factor (SP3), transcript variant 2, mRNA Length = 3980 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 91 cgacggcgaggaggaggccgccgccgtagccg 122 ||||| |||||||||||| ||||||| ||||| Sbjct: 405 cgacgacgaggaggaggcggccgccgcagccg 436
>gb|BC037555.1| Homo sapiens, Similar to early B-cell factor (olfactory neuronal transcription factor 1), clone IMAGE:4944280, mRNA Length = 2090 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gaggccgccgccgtagccgc 123 |||||||||||||||||||| Sbjct: 793 gaggccgccgccgtagccgc 774
>emb|AL035460.15|HS860F19 Human DNA sequence from clone RP5-860F19 on chromosome 20p12.3-13 Contains the gene for a novel protein (KIAA1442), the RPL19P1 gene for ribosomal protein L19 pseudogene 1, the CPX-1 gene for metallocarboxypeptidase, the C20orf141 gene, a novel gene and four CpG islands, complete sequence Length = 135005 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gaggccgccgccgtagccgc 123 |||||||||||||||||||| Sbjct: 68038 gaggccgccgccgtagccgc 68019
>gb|AC113633.5| Rattus norvegicus 4 BAC CH230-350N19 (Children's Hospital Oakland Research Institute) complete sequence Length = 133392 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 gatgggttccctcacaagttcttg 214 |||||| ||||||||||||||||| Sbjct: 19448 gatgggatccctcacaagttcttg 19471
>emb|AJ310752.1|HSA310752 Homo sapiens partial mRNA for transcription factor SP3 (SP3 gene) Length = 300 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 91 cgacggcgaggaggaggccgccgccgtagccg 122 ||||| |||||||||||| ||||||| ||||| Sbjct: 189 cgacgacgaggaggaggcggccgccgcagccg 220
>gb|AC078992.23| Homo sapiens 12q BAC RP11-144F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 84657 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgaacttgtgtggcagtcca 239 |||||||||||||||||||| Sbjct: 13548 tgaacttgtgtggcagtcca 13567
>ref|XM_938882.1| PREDICTED: Homo sapiens KIAA1442 protein (KIAA1442), mRNA Length = 3007 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gaggccgccgccgtagccgc 123 |||||||||||||||||||| Sbjct: 1911 gaggccgccgccgtagccgc 1892
>ref|XM_044921.6| PREDICTED: Homo sapiens KIAA1442 protein (KIAA1442), mRNA Length = 3007 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gaggccgccgccgtagccgc 123 |||||||||||||||||||| Sbjct: 1911 gaggccgccgccgtagccgc 1892
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gaggaggaggccgccgccgt 117 |||||||||||||||||||| Sbjct: 22422607 gaggaggaggccgccgccgt 22422626
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 gaggaggaggccgccgccgt 117 |||||||||||||||||||| Sbjct: 16483720 gaggaggaggccgccgccgt 16483701
>gb|M97191.2|HUMSP3A Homo sapiens Sp3 protein mRNA, partial cds Length = 2217 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 91 cgacggcgaggaggaggccgccgccgtagccg 122 ||||| |||||||||||| ||||||| ||||| Sbjct: 16 cgacgacgaggaggaggcggccgccgcagccg 47
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 gatgggttccctcacaagttcttg 214 |||||| ||||||||||||||||| Sbjct: 1291338 gatgggatccctcacaagttcttg 1291315
>ref|NM_174043.2| Bos taurus dopamine receptor D2 (DRD2), mRNA Length = 2379 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 gcccgccgagcccaggagct 37 |||||||||||||||||||| Sbjct: 820 gcccgccgagcccaggagct 839
>gb|AC016737.8| Homo sapiens BAC clone RP11-394I13 from 2, complete sequence Length = 196085 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 91 cgacggcgaggaggaggccgccgccgtagccg 122 ||||| |||||||||||| ||||||| ||||| Sbjct: 28111 cgacgacgaggaggaggcggccgccgcagccg 28080
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 ggcccgcggcccgccgagcc 29 |||||||||||||||||||| Sbjct: 4476560 ggcccgcggcccgccgagcc 4476541
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gaggaggaggccgccgccgt 117 |||||||||||||||||||| Sbjct: 83674 gaggaggaggccgccgccgt 83693
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 ccgccgccgtagccgcccga 127 |||||||||||||||||||| Sbjct: 1476115 ccgccgccgtagccgcccga 1476096
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0438E12 Length = 146851 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gccgccgccgtagccgcccg 126 |||||||||||||||||||| Sbjct: 138208 gccgccgccgtagccgcccg 138189
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gccgccgccgtagccgcccg 126 |||||||||||||||||||| Sbjct: 51844 gccgccgccgtagccgcccg 51825
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0068B06 Length = 143712 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 gcgccgacggcgaggaggag 106 |||||||||||||||||||| Sbjct: 46588 gcgccgacggcgaggaggag 46607
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0052G07 Length = 156207 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 gcgccgacggcgaggaggag 106 |||||||||||||||||||| Sbjct: 4181 gcgccgacggcgaggaggag 4200
>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0527E02 Length = 176826 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 gaggaggaggccgccgccgt 117 |||||||||||||||||||| Sbjct: 57135 gaggaggaggccgccgccgt 57116
>gb|AE005066.1| Halobacterium sp. NRC-1 section 97 of 170 of the complete genome Length = 11460 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcgaggaggaggccgccgcc 115 |||||||||||||||||||| Sbjct: 6239 gcgaggaggaggccgccgcc 6258
>gb|AE005064.1| Halobacterium sp. NRC-1 section 95 of 170 of the complete genome Length = 17685 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 cggcgaggaggaggccgccgccgt 117 ||||||||||| |||||||||||| Sbjct: 13845 cggcgaggaggcggccgccgccgt 13822
>dbj|AK119680.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H10, full insert sequence Length = 690 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 86 agcgccgacggcgaggaggaggccgccg 113 |||||||||||| |||||||||||||| Sbjct: 321 agcgccgacggcccggaggaggccgccg 348
>dbj|AK103222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123A02, full insert sequence Length = 1165 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cgaggaggaggccgccgccg 116 |||||||||||||||||||| Sbjct: 827 cgaggaggaggccgccgccg 846
>dbj|AK072020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104C21, full insert sequence Length = 1807 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gaggaggaggccgccgccgt 117 |||||||||||||||||||| Sbjct: 1628 gaggaggaggccgccgccgt 1647
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2, fertilization-independent endosperm proteins, hypothetical protein, putative non-LTR retroelement reverse transcriptase, OCL5 protein, tryptophan synthase beta-subunit, hypothetical proteins, putative AP endonuclease, putative RNA polymerase II complex component SRB7, putative beta-1,3-glucanase, hypothetical protein, TNP2-like protein, hypothetical protein, putative phosphate/phosphoenolpyruvate translocator, putative protein, hypothetical proteins, putative galactosyltransferase family, hypothetical protein, putative cytochrome P450 family, putative lipid transfer protein, putative photoreceptor-interacting protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds Length = 202197 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 cggcgaggaggaggccgccgccgt 117 ||||||||||||||||| |||||| Sbjct: 146560 cggcgaggaggaggccggcgccgt 146537
>dbj|AK063608.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C12, full insert sequence Length = 696 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 86 agcgccgacggcgaggaggaggccgccg 113 |||||||||||| |||||||||||||| Sbjct: 327 agcgccgacggcccggaggaggccgccg 354
>tpe|BN000605.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx76 gene for class III peroxidase 76 precursor, exon 1 Length = 984 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 gcgccgacggcgaggaggag 106 |||||||||||||||||||| Sbjct: 463 gcgccgacggcgaggaggag 444
>gb|AC140282.3| Mus musculus BAC clone RP24-501L1 from 1, complete sequence Length = 206690 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 agttcttggatgatgaactt 226 |||||||||||||||||||| Sbjct: 42269 agttcttggatgatgaactt 42250
>gb|U75436.1|HSU75436 Halobacterium salinarium transducer HtB protein (HtB) gene, complete cds Length = 1700 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 cggcgaggaggaggccgccgccgt 117 ||||||||||| |||||||||||| Sbjct: 547 cggcgaggaggcggccgccgccgt 570
>emb|X51657.1|BTD2DOR B.taurus dopamine D2 receptor mRNA Length = 2379 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 gcccgccgagcccaggagct 37 |||||||||||||||||||| Sbjct: 820 gcccgccgagcccaggagct 839
>gb|AF494280.1| Homo sapiens GC-binding transcription factor Sp3 gene, partial cds Length = 9596 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 91 cgacggcgaggaggaggccgccgccgtagccg 122 ||||| |||||||||||| ||||||| ||||| Sbjct: 1888 cgacgacgaggaggaggcggccgccgcagccg 1919
>dbj|AB017914.1| Oryza sativa mRNA for L-zip+NBS+LRR, complete cds Length = 3474 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 cgccgacggcgaggaggagg 107 |||||||||||||||||||| Sbjct: 599 cgccgacggcgaggaggagg 618
>dbj|AB037863.1| Homo sapiens mRNA for KIAA1442 protein, partial cds Length = 2782 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gaggccgccgccgtagccgc 123 |||||||||||||||||||| Sbjct: 1687 gaggccgccgccgtagccgc 1668 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,161,622 Number of Sequences: 3902068 Number of extensions: 2161622 Number of successful extensions: 45627 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44123 Number of HSP's gapped (non-prelim): 1504 length of query: 296 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 274 effective length of database: 17,147,199,772 effective search space: 4698332737528 effective search space used: 4698332737528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
