ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38a07 |
|---|---|
| Clone Library Name | barley_pub |
>IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) Length = 935 Score = 40.4 bits (93), Expect = 0.002 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = +1 Query: 241 MASRFWGQGXXXXXXXXX-XXXXXQGSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTE 417 M SRF+ QG + SD+E + G K++YL D D D Sbjct: 1 MTSRFFYQGGDQSDTDDEPTDIDDEPSDTEPAPTDPNG----KSKYLAGGNADDSDDDDG 56 Query: 418 SHRVIRSLKDKAHDEMKATAD 480 RV++S KDK DEM +T D Sbjct: 57 QKRVVKSAKDKRFDEMASTVD 77
>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) (p105) Length = 900 Score = 38.9 bits (89), Expect = 0.007 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Frame = +1 Query: 313 GSDSEKS-----EAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKDKAHDEMKATA 477 GS+SE E + D NRYL ++D DD+D + RV++ KDK +EM T Sbjct: 10 GSESEDESDYEVEVNEVQNDDVNNRYLQSGSEDDDDTD--TKRVVKPAKDKRFEEMTYTV 67 Query: 478 D 480 D Sbjct: 68 D 68
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 31.2 bits (69), Expect = 1.5 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%) Frame = -2 Query: 355 RVPHHQLLISRYHSLVL-----TRSRPHPPQSHCLPVPKN 251 +V HHQLL+ + + + S+ PP HC+P+P + Sbjct: 316 KVSHHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355
>AMEL_MONDO (Q28462) Amelogenin| Length = 202 Score = 31.2 bits (69), Expect = 1.5 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = -2 Query: 403 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVP 257 HH ++ + S S +H +P ++H ++ +P PPQ +PVP Sbjct: 47 HHQIIPVLSQQHSPSHSLP------PQHHIPIMAAQQPAPPQQPVMPVP 89
>GNRP_MOUSE (P27671) Guanine nucleotide-releasing protein (GNRP) (Ras-specific| nucleotide exchange factor CDC25) (CDC25Mm) Length = 1262 Score = 30.8 bits (68), Expect = 2.0 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 13/56 (23%) Frame = +1 Query: 352 RDGSKNRYLN-------KYTQDSDDSDTESHRVIRSLKDKAHD------EMKATAD 480 R + NR LN K+TQD D DT +RVI L++ HD E KA A+ Sbjct: 936 RRAATNRVLNVLRHWVTKHTQDFDTDDTLKYRVICFLEEVMHDPDLLTQERKAAAN 991
>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)| (x.MCM7) Length = 720 Score = 30.8 bits (68), Expect = 2.0 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +1 Query: 145 NSPFSAGSEPHPLHGRDSSLKTVEGNLQAAAAMASRF 255 N+ S + +P +GR + KTVE N+Q AA+ SRF Sbjct: 478 NARCSILAAANPAYGRYNPKKTVEQNIQLPAALLSRF 514
>IF38_YEAST (P32497) Eukaryotic translation initiation factor 3 93 kDa subunit| (eIF3 p93) (Nuclear transport protein NIP1) Length = 812 Score = 30.4 bits (67), Expect = 2.6 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 14/64 (21%) Frame = +1 Query: 319 DSEKSEAGDGGRD-----------GSKNRYLNKYTQDSDDSDTESH---RVIRSLKDKAH 456 DS+ S+A G D G N++L DS D +++ +V++S K+K Sbjct: 61 DSDDSDAKPYGPDWFKKSEFRKQGGGSNKFLKSSNYDSSDEESDEEDGKKVVKSAKEKLL 120 Query: 457 DEMK 468 DEM+ Sbjct: 121 DEMQ 124
>CT012_HUMAN (Q9NVP4) Protein C20orf12| Length = 579 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = +1 Query: 340 GDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKDKAHDEMK 468 GDGG GS++ +++ Y+Q + D+ E + I++ K K E K Sbjct: 385 GDGGLCGSRSSWVSDYSQSTSDT-IEKIKRIKNFKTKTFQEKK 426
>SYH_PORPU (P51348) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 430 Score = 30.0 bits (66), Expect = 3.3 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Frame = +2 Query: 206 RQLKVIYKQQQPWRLVFGD----RETVTLRRMWTRSSQNKGVIARNQKL 340 +QLK +K++ L+ GD +ET+T++ M+T+ +N +I K+ Sbjct: 366 KQLKQAHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKNKI 414
>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3| subunit 8 (eIF3 p110) (eIF3c) Length = 898 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = +1 Query: 310 QGSDSEKSEAGDGGRDGSKNRYLNKYTQDSD---DSDTESHRVIRSLKDKAHDEMK 468 + SDS+ S + D D N+ K+ D D + + RV+R+ KDK DE+K Sbjct: 9 EDSDSDTSSSEDEVEDQKVNKSA-KFRDDLDFMAGPEEDEKRVVRAQKDKKFDELK 63
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3| Length = 1333 Score = 30.0 bits (66), Expect = 3.3 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 340 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 239 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2| Length = 1333 Score = 30.0 bits (66), Expect = 3.3 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 340 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 239 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1| Length = 1333 Score = 30.0 bits (66), Expect = 3.3 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 340 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 239 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1776 Score = 29.3 bits (64), Expect = 5.7 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 16/48 (33%) Frame = -2 Query: 349 PHHQLLISRY------HSLVLTRSRPHPPQS----------HCLPVPK 254 PH L +S+ HSL++TR PH P S +CLP+P+ Sbjct: 227 PHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPE 274
>E41L4_BRARE (O57457) Band 4.1-like protein 4 (Nbl4 protein)| Length = 619 Score = 29.3 bits (64), Expect = 5.7 Identities = 24/102 (23%), Positives = 39/102 (38%) Frame = +1 Query: 157 SAGSEPHPLHGRDSSLKTVEGNLQAAAAMASRFWGQGXXXXXXXXXXXXXXQGSDSEKSE 336 S GSE P H R + + N Q SR G+ S SE Sbjct: 440 SGGSENEPRHRRGQTADDAQANKQHRRRSRSR--------------------GNTSSGSE 479 Query: 337 AGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKDKAHDE 462 + + R+ K R ++ + + DS + V+R K+K ++ Sbjct: 480 SENSNREHRKKRNRSRQSNEMVDSAPQWEVVLRRQKEKTPND 521
>PALH_NEUCR (Q7RY98) pH-response regulator protein palH/rim-21| Length = 778 Score = 28.9 bits (63), Expect = 7.5 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +1 Query: 313 GSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSD-TESHRVIRSLKDKAHDEMKATAD 480 GSDS+ +E+G GG+DG + L+++ S S T HR S +++ ++ A+ Sbjct: 411 GSDSQDTESGGGGKDGGPS--LSRFGAWSKISTLTSKHRTEPSSRNEPNEGSSPVAE 465
>RELN_MOUSE (Q60841) Reelin precursor (EC 3.4.21.-) (Reeler protein)| Length = 3461 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Frame = -2 Query: 445 PSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 341 PS+S S G S +Q H +Y ++ SW T ++P H Sbjct: 3162 PSSSNSIGCSPFQFHEATIYNAVNSSSWKRITIQLPDH 3199
>AMELY_PANTR (Q861X8) Amelogenin, Y isoform precursor (Fragment)| Length = 203 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/53 (26%), Positives = 24/53 (45%) Frame = -2 Query: 403 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVPKNET 245 HH ++ + S TH + H +H V+ +P PQ +PVP ++ Sbjct: 77 HHQIIPVVSQQHPLTHTLQSH------HHIPVVPAQQPRVPQQAMMPVPGQQS 123
>RELN_RAT (P58751) Reelin precursor (EC 3.4.21.-)| Length = 3462 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Frame = -2 Query: 445 PSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 341 PS+S S G S +Q H +Y ++ SW T ++P H Sbjct: 3163 PSSSNSIGCSPFQFHEATIYNAVNSSSWKRITIQLPDH 3200
>HEMA_CVMA5 (P31615) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3| glycoprotein) Length = 428 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -1 Query: 257 QKRDAMAAAACKLPSTVFKLESRPWSG*GSDPAENGE 147 ++ D M AAAC+LP F+ S +SG G+ A +G+ Sbjct: 309 RQSDNMTAAACQLPYCFFRNTSANYSG-GTHDAHHGD 344 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.305 0.123 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,632,911 Number of Sequences: 219361 Number of extensions: 1035011 Number of successful extensions: 2498 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2460 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits)
