ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TSP4_RAT (P49744) Thrombospondin-4 precursor 30 2.7
2TSP4_MOUSE (Q9Z1T2) Thrombospondin-4 precursor 30 2.7

>TSP4_RAT (P49744) Thrombospondin-4 precursor|
          Length = 980

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 185 CGPTMASTPPPRDLARLDPAAPPTR 259
           CGP    +P P  L  + P APPTR
Sbjct: 279 CGPLSFQSPTPNTLVPIAPPAPPTR 303



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>TSP4_MOUSE (Q9Z1T2) Thrombospondin-4 precursor|
          Length = 963

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 185 CGPTMASTPPPRDLARLDPAAPPTR 259
           CGP    +P P  L  + P APPTR
Sbjct: 263 CGPLSFQSPTPNTLVPIAPPAPPTR 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,253,278
Number of Sequences: 219361
Number of extensions: 537337
Number of successful extensions: 2268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2268
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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