ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38a05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_465847.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2973 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 379 ctgtaaagatttcctccgcaagtttgtggacaacgagcttctcacttgcagcctagagga 438 |||||||||||| ||||| |||||||||||||| || || | || | ||||||||||| Sbjct: 385 ctgtaaagattttctccggaagtttgtggacaatgaactattgacatcaagcctagagga 444 Query: 439 ctggttctccgggaacagcgaagactgcggtttcaagaagcc 480 ||||||||| ||| |||| |||||||| |||||||||||||| Sbjct: 445 ctggttctctgggcacagtgaagactgtggtttcaagaagcc 486
>ref|XM_506808.1| PREDICTED Oryza sativa (japonica cultivar-group), P0654A08.34 mRNA Length = 3027 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 379 ctgtaaagatttcctccgcaagtttgtggacaacgagcttctcacttgcagcctagagga 438 |||||||||||| ||||| |||||||||||||| || || | || | ||||||||||| Sbjct: 439 ctgtaaagattttctccggaagtttgtggacaatgaactattgacatcaagcctagagga 498 Query: 439 ctggttctccgggaacagcgaagactgcggtttcaagaagcc 480 ||||||||| ||| |||| |||||||| |||||||||||||| Sbjct: 499 ctggttctctgggcacagtgaagactgtggtttcaagaagcc 540
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 379 ctgtaaagatttcctccgcaagtttgtggacaacgagcttctcacttgcagcctagagga 438 |||||||||||| ||||| |||||||||||||| || || | || | ||||||||||| Sbjct: 17882707 ctgtaaagattttctccggaagtttgtggacaatgaactattgacatcaagcctagagga 17882766 Query: 439 ctggttctccgggaacagcgaagactgcggtttcaagaagcc 480 ||||||||| ||| |||| |||||||| |||||||||||||| Sbjct: 17882767 ctggttctctgggcacagtgaagactgtggtttcaagaagcc 17882808 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 acgccgcctctccccctccgc 54 ||||||||||||||||||||| Sbjct: 8865249 acgccgcctctccccctccgc 8865269
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B06 Length = 99637 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 379 ctgtaaagatttcctccgcaagtttgtggacaacgagcttctcacttgcagcctagagga 438 |||||||||||| ||||| |||||||||||||| || || | || | ||||||||||| Sbjct: 17340 ctgtaaagattttctccggaagtttgtggacaatgaactattgacatcaagcctagagga 17399 Query: 439 ctggttctccgggaacagcgaagactgcggtttcaagaagcc 480 ||||||||| ||| |||| |||||||| |||||||||||||| Sbjct: 17400 ctggttctctgggcacagtgaagactgtggtttcaagaagcc 17441
>dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654A08 Length = 154812 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 379 ctgtaaagatttcctccgcaagtttgtggacaacgagcttctcacttgcagcctagagga 438 |||||||||||| ||||| |||||||||||||| || || | || | ||||||||||| Sbjct: 122238 ctgtaaagattttctccggaagtttgtggacaatgaactattgacatcaagcctagagga 122297 Query: 439 ctggttctccgggaacagcgaagactgcggtttcaagaagcc 480 ||||||||| ||| |||| |||||||| |||||||||||||| Sbjct: 122298 ctggttctctgggcacagtgaagactgtggtttcaagaagcc 122339
>dbj|AK100315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078O21, full insert sequence Length = 3029 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 379 ctgtaaagatttcctccgcaagtttgtggacaacgagcttctcacttgcagcctagagga 438 |||||||||||| ||||| |||||||||||||| || || | || | ||||||||||| Sbjct: 439 ctgtaaagattttctccggaagtttgtggacaatgaactattgacatcaagcctagagga 498 Query: 439 ctggttctccgggaacagcgaagactgcggtttcaagaagcc 480 ||||||||| ||| |||| |||||||| |||||||||||||| Sbjct: 499 ctggttctctgggcacagtgaagactgtggtttcaagaagcc 540
>dbj|AK100111.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005P11, full insert sequence Length = 2975 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 379 ctgtaaagatttcctccgcaagtttgtggacaacgagcttctcacttgcagcctagagga 438 |||||||||||| ||||| |||||||||||||| || || | || | ||||||||||| Sbjct: 385 ctgtaaagattttctccggaagtttgtggacaatgaactattgacatcaagcctagagga 444 Query: 439 ctggttctccgggaacagcgaagactgcggtttcaagaagcc 480 ||||||||| ||| |||| |||||||| |||||||||||||| Sbjct: 445 ctggttctctgggcacagtgaagactgtggtttcaagaagcc 486
>gb|AY111428.1| Zea mays CL26857_1 mRNA sequence Length = 727 Score = 60.0 bits (30), Expect = 7e-06 Identities = 81/98 (82%) Strand = Plus / Plus Query: 383 aaagatttcctccgcaagtttgtggacaacgagcttctcacttgcagcctagaggactgg 442 |||||||| ||||| ||||||||||||| || ||| | |||| ||||||||||| ||| Sbjct: 386 aaagattttctccggaagtttgtggacagtgaacttttaacttcaagcctagaggattgg 445 Query: 443 ttctccgggaacagcgaagactgcggtttcaagaagcc 480 ||||| || |||| ||||| || ||||||| |||||| Sbjct: 446 ttctctggtcacagtgaagattgtggtttcaggaagcc 483
>gb|AF506522.2| Streptomyces hygroscopicus AHBA biosynthetic gene cluster, partial sequence Length = 22131 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 82 cggaggaggcggcggttgctcggc 105 |||||||||||||||||||||||| Sbjct: 11140 cggaggaggcggcggttgctcggc 11163 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 cggaggaggcggcggttgctcggc 105 ||||||||| |||||||||||||| Sbjct: 4574 cggaggaggaggcggttgctcggc 4597
>gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosome 7, complete sequence Length = 221679 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 cctctcctcttttttctcctct 28 |||||||||||||||||||||| Sbjct: 214690 cctctcctcttttttctcctct 214711
>dbj|AK128712.1| Homo sapiens cDNA FLJ46879 fis, clone UTERU3015011, highly similar to Paxillin Length = 4132 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 71 ggcagaggagccggaggaggcggcgg 96 |||||||||||||| ||||||||||| Sbjct: 334 ggcagaggagccggcggaggcggcgg 359
>gb|AC091430.3| Homo sapiens chromosome 5 clone CTD-2207A17, complete sequence Length = 84143 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 ccctctcctcttttttctcctc 27 |||||||||||||||||||||| Sbjct: 81848 ccctctcctcttttttctcctc 81869
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 436 ggactggttctccgggaacagc 457 |||||||||||||||||||||| Sbjct: 2318039 ggactggttctccgggaacagc 2318060
>gb|AC010338.7| Homo sapiens chromosome 5 clone CTD-2007F2, complete sequence Length = 105838 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 ccctctcctcttttttctcctc 27 |||||||||||||||||||||| Sbjct: 2430 ccctctcctcttttttctcctc 2451
>emb|AL391686.10| Human DNA sequence from clone CTB-BR164I22 on chromosome 10, complete sequence Length = 59938 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 ccctctcctcttttttctcctc 27 |||||||||||||||||||||| Sbjct: 54918 ccctctcctcttttttctcctc 54939
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 5 cccctctcctcttttttctcctctac 30 |||||||||||| ||||||||||||| Sbjct: 22355363 cccctctcctctcttttctcctctac 22355388
>dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013G02 Length = 163419 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 5 cccctctcctcttttttctcctctac 30 |||||||||||| ||||||||||||| Sbjct: 52633 cccctctcctctcttttctcctctac 52658
>gb|AC004263.1|AC004263 Homo sapiens PAC clone 278C19 from 12q, complete sequence Length = 106921 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 71 ggcagaggagccggaggaggcggcgg 96 |||||||||||||| ||||||||||| Sbjct: 24674 ggcagaggagccggcggaggcggcgg 24649
>gb|AC149593.5| Mus musculus BAC clone RP23-34O23 from 7, complete sequence Length = 231000 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 cctctcctcttttttctcctct 28 |||||||||||||||||||||| Sbjct: 168422 cctctcctcttttttctcctct 168401
>dbj|AB209034.1| Homo sapiens mRNA for Paxillin variant protein Length = 5457 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 71 ggcagaggagccggaggaggcggcgg 96 |||||||||||||| ||||||||||| Sbjct: 1967 ggcagaggagccggcggaggcggcgg 1992
>gb|AC147054.4| Pan troglodytes BAC clone RP43-145A1 from 7, complete sequence Length = 153627 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 cctctcctcttttttctcctc 27 ||||||||||||||||||||| Sbjct: 3470 cctctcctcttttttctcctc 3450
>gb|AC147035.3| Pan troglodytes BAC clone RP43-104N19 from 7, complete sequence Length = 177446 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 cctctcctcttttttctcctc 27 ||||||||||||||||||||| Sbjct: 146676 cctctcctcttttttctcctc 146656
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 gaccaatcgcctgaccggcgc 361 ||||||||||||||||||||| Sbjct: 5884067 gaccaatcgcctgaccggcgc 5884087 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 gtgtggtgcgggccgacgatggca 202 ||||||||| |||||||||||||| Sbjct: 3654917 gtgtggtgctggccgacgatggca 3654894
>gb|AC141870.4| Mus musculus BAC clone RP24-359E19 from chromosome 19, complete sequence Length = 153749 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 cccctctcctcttttttctcctcta 29 ||||||||||||| ||||||||||| Sbjct: 103286 cccctctcctcttctttctcctcta 103262
>emb|CT009536.7| Mouse DNA sequence from clone RP23-25A7 on chromosome 14, complete sequence Length = 239515 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 ctctcctcttttttctcctct 28 ||||||||||||||||||||| Sbjct: 150918 ctctcctcttttttctcctct 150938
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 cggcgcagttcatcatcatcc 376 ||||||||||||||||||||| Sbjct: 304064 cggcgcagttcatcatcatcc 304044
>gb|AC164008.2| Mus musculus chromosome 1, clone RP23-311L17, complete sequence Length = 171582 Score = 42.1 bits (21), Expect = 1.7 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 1 caatcccctctcctctt-ttttctcctct 28 ||||||||||||||||| ||||||||||| Sbjct: 85228 caatcccctctcctcttcttttctcctct 85200
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 cggcgcagttcatcatcatcc 376 ||||||||||||||||||||| Sbjct: 874400 cggcgcagttcatcatcatcc 874420
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 cgccggccccggcctcgccac 316 ||||||||||||||||||||| Sbjct: 3142845 cgccggccccggcctcgccac 3142865
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cggcgcggcgaccggcagagg 78 ||||||||||||||||||||| Sbjct: 439270 cggcgcggcgaccggcagagg 439250
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 acgccgcctctccccctccgc 54 ||||||||||||||||||||| Sbjct: 7348321 acgccgcctctccccctccgc 7348341
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 8 ctctcctcttttttctcctctactccacg 36 ||||||||||| ||||||||| ||||||| Sbjct: 8107613 ctctcctctttcttctcctctcctccacg 8107585 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ctctcctcttttttctcctc 27 |||||||||||||||||||| Sbjct: 13149962 ctctcctcttttttctcctc 13149981
>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0613F08 Length = 142937 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 acgccgcctctccccctccgc 54 ||||||||||||||||||||| Sbjct: 70267 acgccgcctctccccctccgc 70287
>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0592E11 Length = 153734 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 8 ctctcctcttttttctcctctactccacg 36 ||||||||||| ||||||||| ||||||| Sbjct: 131382 ctctcctctttcttctcctctcctccacg 131354
>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0086N05 Length = 163670 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 acgccgcctctccccctccgc 54 ||||||||||||||||||||| Sbjct: 75002 acgccgcctctccccctccgc 75022
>emb|AL805914.14| Mouse DNA sequence from clone RP23-159N16 on chromosome 4, complete sequence Length = 48063 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 4 tcccctctcctcttttttctcctct 28 ||||||||||||||| ||||||||| Sbjct: 19696 tcccctctcctctttcttctcctct 19720
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 acgccgcctctccccctccg 53 |||||||||||||||||||| Sbjct: 146823 acgccgcctctccccctccg 146804
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cgcctctccccctccgcacc 57 |||||||||||||||||||| Sbjct: 296503 cgcctctccccctccgcacc 296484
>gb|AC137618.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0090H02, complete sequence Length = 135231 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ccctctcctcttttttctcc 25 |||||||||||||||||||| Sbjct: 125316 ccctctcctcttttttctcc 125297
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tcctcttttttctcctctac 30 |||||||||||||||||||| Sbjct: 691773 tcctcttttttctcctctac 691754
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 tccgcacccggcgcggcgaccggc 73 ||||| |||||||||||||||||| Sbjct: 553499 tccgctcccggcgcggcgaccggc 553476
>ref|XM_421225.1| PREDICTED: Gallus gallus similar to Striatin 3 (Cell-cycle autoantigen SG2NA) (S/G2 antigen) (LOC423308), mRNA Length = 2769 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ggagccggaggaggcggcgg 96 |||||||||||||||||||| Sbjct: 16 ggagccggaggaggcggcgg 35
>ref|XM_426003.1| PREDICTED: Gallus gallus similar to eomesodermin; t box, brain, 2; eomesodermin (Xenopus laevis) homolog (LOC428443), mRNA Length = 2064 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ggagccggaggaggcggcgg 96 |||||||||||||||||||| Sbjct: 70 ggagccggaggaggcggcgg 89
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ccctctcctcttttttctcc 25 |||||||||||||||||||| Sbjct: 27771 ccctctcctcttttttctcc 27752
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gaccaatcgcctgaccggcg 360 |||||||||||||||||||| Sbjct: 1260981 gaccaatcgcctgaccggcg 1260962
>gb|U88172.1| Caenorhabditis elegans cosmid ZK354, complete sequence Length = 24049 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tctcctcttttttctcctct 28 |||||||||||||||||||| Sbjct: 7379 tctcctcttttttctcctct 7398
>gb|AY328023.1|AY328003S21 Symbiont bacterium of Paederus fuscipes putative isocitrate dehydrogenase kinase/phosphatase gene, partial cds; and putative dioxygenase, putative pederin biosynthesis mixed type I polyketide synthase/nonribosomal peptide synthetase gene cluster, hypothetical protein, putative RNA methylase, hypothetical protein, and putative aldehyde dehydrogenase genes, complete cds Length = 75778 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cacccggcgcggcgaccggc 73 |||||||||||||||||||| Sbjct: 42000 cacccggcgcggcgaccggc 41981
>ref|XM_542191.2| PREDICTED: Canis familiaris similar to Histone-lysine N-methyltransferase, H3 lysine-79 specific (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (DOT1-like protein) (LOC485073), mRNA Length = 6539 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cggccccggcctcgccacgg 318 |||||||||||||||||||| Sbjct: 4557 cggccccggcctcgccacgg 4576
>emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chromosome 17, complete sequence Length = 202526 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 tcccctctcctcttttttctcctc 27 |||||||||||| ||||||||||| Sbjct: 14044 tcccctctcctcctttttctcctc 14067
>ref|XM_570251.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CND02530) partial mRNA Length = 2939 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tcctcttttttctcctctac 30 |||||||||||||||||||| Sbjct: 263 tcctcttttttctcctctac 244
>gb|AC160124.3| Mus musculus BAC clone RP23-297P22 from chromosome 9, complete sequence Length = 182831 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 cctcttttttctcctctactccac 35 |||||||| ||||||||||||||| Sbjct: 165215 cctcttttctctcctctactccac 165192
>gb|AC159886.2| Mus musculus BAC clone RP24-397P9 from chromosome 9, complete sequence Length = 191328 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 cctcttttttctcctctactccac 35 |||||||| ||||||||||||||| Sbjct: 148076 cctcttttctctcctctactccac 148099
>gb|AY128463.1| Drosophila melanogaster RE18773 full insert cDNA Length = 5617 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcagaggagccggaggagg 90 |||||||||||||||||||| Sbjct: 1721 ggcagaggagccggaggagg 1740
>gb|AC093192.2| Drosophila melanogaster 3L BAC RP98-48J18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166862 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcagaggagccggaggagg 90 |||||||||||||||||||| Sbjct: 13810 ggcagaggagccggaggagg 13829
>gb|AC010564.7| Drosophila melanogaster 3L BAC RP98-27O1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 196594 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcagaggagccggaggagg 90 |||||||||||||||||||| Sbjct: 184232 ggcagaggagccggaggagg 184251
>ref|NM_206232.1| Drosophila melanogaster CG7852-RC, transcript variant C (CG7852), mRNA Length = 5600 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcagaggagccggaggagg 90 |||||||||||||||||||| Sbjct: 1721 ggcagaggagccggaggagg 1740
>ref|NM_167890.1| Drosophila melanogaster CG7852-RB, transcript variant B (CG7852), mRNA Length = 5385 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcagaggagccggaggagg 90 |||||||||||||||||||| Sbjct: 1725 ggcagaggagccggaggagg 1744
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tctcctcttttttctcctct 28 |||||||||||||||||||| Sbjct: 1881379 tctcctcttttttctcctct 1881398
>ref|NM_139363.1| Drosophila melanogaster CG7852-RA, transcript variant A (CG7852), mRNA Length = 5381 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcagaggagccggaggagg 90 |||||||||||||||||||| Sbjct: 1721 ggcagaggagccggaggagg 1740
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 aggtgtggtgcgggccgacg 196 |||||||||||||||||||| Sbjct: 2672869 aggtgtggtgcgggccgacg 2672850
>emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in linkage group 14, complete sequence Length = 190254 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 8 ctctcctcttttttctcctctactccac 35 ||||||||||||| |||||| ||||||| Sbjct: 46388 ctctcctctttttcctcctccactccac 46415
>gb|AC062004.5| Homo sapiens chromosome 8, clone RP11-325O20, complete sequence Length = 205646 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tcctcttttttctcctctac 30 |||||||||||||||||||| Sbjct: 161258 tcctcttttttctcctctac 161277
>gb|AC004971.3| Homo sapiens PAC clone RP5-1125K23 from 7, complete sequence Length = 123253 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 cgccggccccggcctcgccacggc 319 |||||||||||||||| ||||||| Sbjct: 122670 cgccggccccggcctccccacggc 122647
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ggagccggaggaggcggcgg 96 |||||||||||||||||||| Sbjct: 481400 ggagccggaggaggcggcgg 481419
>ref|NM_068373.1| Caenorhabditis elegans ZK354.7 (ZK354.7) mRNA, complete cds Length = 675 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tctcctcttttttctcctct 28 |||||||||||||||||||| Sbjct: 565 tctcctcttttttctcctct 546
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ccctctcctcttttttctcc 25 |||||||||||||||||||| Sbjct: 17497966 ccctctcctcttttttctcc 17497947
>gb|AF521897.1| Streptomyces hygroscopicus ansamycin biosynthesis gene cluster, partial sequence Length = 6567 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 cggaggaggcggcggttgctcggc 105 ||||||||| |||||||||||||| Sbjct: 4571 cggaggaggaggcggttgctcggc 4594
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ctctcctcttttttctcctc 27 |||||||||||||||||||| Sbjct: 67150 ctctcctcttttttctcctc 67169
>ref|NM_207970.1| Eremothecium gossypii AAR076Cp (AAR076C), mRNA Length = 660 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ggagccggaggaggcggcgg 96 |||||||||||||||||||| Sbjct: 444 ggagccggaggaggcggcgg 425
>gb|AE003472.1| Drosophila melanogaster chromosome 3L, section 6 of 83 of the complete sequence Length = 303191 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcagaggagccggaggagg 90 |||||||||||||||||||| Sbjct: 5197 ggcagaggagccggaggagg 5216
>gb|AC004333.1|AC004333 Drosophila melanogaster DNA sequence (P1 DS05969 (D229)), complete sequence Length = 63178 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 ggcagaggagccggaggagg 90 |||||||||||||||||||| Sbjct: 27957 ggcagaggagccggaggagg 27938
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tctcctcttttttctcctct 28 |||||||||||||||||||| Sbjct: 3805390 tctcctcttttttctcctct 3805371
>emb|AL806530.6| Mouse DNA sequence from clone RP23-152B24 on chromosome 4, complete sequence Length = 85718 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cctctcctcttttttctcct 26 |||||||||||||||||||| Sbjct: 52668 cctctcctcttttttctcct 52687 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,981,213 Number of Sequences: 3902068 Number of extensions: 2981213 Number of successful extensions: 72810 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 71773 Number of HSP's gapped (non-prelim): 1038 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
