ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl38a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ507092.1|HVU507092 Hordeum vulgare partial mRNA for NBS-LR... 111 2e-21
2emb|AJ507089.1|HVU507089 Hordeum vulgare partial mRNA for NBS-LR... 107 3e-20
3gb|AY123940.1| Aegilops tauschii putative RGA protein 567B-3.2 g... 101 2e-18
4emb|AJ507101.1|HVU507101 Hordeum vulgare partial mRNA for NBS-LR... 98 3e-17
5gb|AY123939.1| Aegilops tauschii putative RGA protein 567A-4.7 g... 80 7e-12
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
7dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
9dbj|AP005631.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
10dbj|AP005924.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
11dbj|AK073576.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
12gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, part... 48 0.024
13emb|Z14989.1|ATUBC8 A.thaliana UBC8 gene for ubiquitin conjugati... 46 0.096
14dbj|AB005233.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 46 0.096
15gb|L00638.1|ATHUBCA Arabidopsis thaliana ubiquitin conjugating e... 46 0.096
16dbj|AP005777.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
17gb|AC165969.5| Mus musculus BAC clone RP23-141K11 from chromosom... 42 1.5
18gb|AC122521.4| Mus musculus BAC clone RP24-476C7 from chromosome... 42 1.5
19gb|AC121853.3| Mus musculus BAC clone RP24-96P15 from chromosome... 42 1.5
20gb|AC121869.2| Mus musculus BAC clone RP24-121C10 from 17, compl... 42 1.5
21gb|AF351392.1| Gossypium hirsutum clone JESPR154 microsatellite ... 42 1.5
22gb|AC069025.5| Homo sapiens chromosome 10 clone RP11-526G5, comp... 42 1.5
23gb|AF129005.1|AF129005 Mus musculus VNO olfactory cluster 42 1.5
24gb|AC137630.9| Homo sapiens 3 BAC RP13-131K19 (Roswell Park Canc... 42 1.5
25gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 40 5.9
26gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 40 5.9
27ref|XM_650036.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 5.9
28ref|XM_723883.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 5.9
29gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.9
30emb|AL157413.18| Human DNA sequence from clone RP11-526K17 on ch... 40 5.9
31emb|AL049589.15|HSJ570L12 Human DNA sequence from clone RP4-570L... 40 5.9
32emb|Z54140.2|SPBC12C2 S.pombe chromosome II cosmid c12C2 40 5.9
33emb|X72584.1|CHCRTRNAV C.reflexa chloroplast genes trnA, trnI, t... 40 5.9
34gb|AC106857.8| Homo sapiens chromosome 8, clone RP11-262O21, com... 40 5.9
35gb|AC022666.14| Homo sapiens, clone RP11-30K7, complete sequence 40 5.9
36gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, compl... 40 5.9
37gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, comp... 40 5.9
38gb|AC146532.3| Otolemur garnettii clone CH256-151F13, complete s... 40 5.9
39dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.9
40gb|AC133598.4| Mus musculus BAC clone RP24-374G16 from 13, compl... 40 5.9
41emb|CT025633.3| Pan troglodytes chromosome X clone RP43-007L03 m... 40 5.9
42gb|AC138617.4| Mus musculus BAC clone RP23-403G9 from 8, complet... 40 5.9
43emb|AL929007.6| Zebrafish DNA sequence from clone CH211-235E9 in... 40 5.9
44gb|U01017.1|U01017 Saccharomyces cerevisiae Fab1p (FAB1) gene, c... 40 5.9
45emb|AL844893.9| Mouse DNA sequence from clone RP23-355H24 on chr... 40 5.9
46dbj|D50617.1|YSCCHRVIN Saccharomyces cerevisiae chromosome VI co... 40 5.9 
>emb|AJ507092.1|HVU507092 Hordeum vulgare partial mRNA for NBS-LRR disease resistance protein
            homologue (rga S-372 gene)
          Length = 4748

 Score =  111 bits (56), Expect = 2e-21
 Identities = 161/196 (82%)
 Strand = Plus / Plus

                                                                        
Query: 245  ttacctagcacactatccagattttatcacttgaaattcttggacctaattagttggcat 304
            |||||||| |||||||| ||||||||||||||||||||||||||||||  | |||||| |
Sbjct: 2100 ttacctagtacactatcaagattttatcacttgaaattcttggacctaggtcgttggctt 2159

                                                                        
Query: 305  ggtagttctaacttgcctaaagacattggtcgtcttgtgaatttacgcgatttcttcgct 364
             |||||| | | |||||| ||||| || | |  |||| ||||||||  ||||||   |||
Sbjct: 2160 agtagttttcatttgcctgaagactttagccaccttgagaatttacatgatttccatgct 2219

                                                                        
Query: 365  agaaaagaactccactccaatgttcctgaggctggaaagatgaagtatctgcgggagcta 424
            ||||  ||| ||||||||||| |||   | |  |||||||||||| |||||| |||||| 
Sbjct: 2220 agaagtgaattccactccaatattcgcaatgtcggaaagatgaagcatctgcaggagctg 2279

                            
Query: 425  aaagaattccatgtga 440
            ||||||||||||||||
Sbjct: 2280 aaagaattccatgtga 2295



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                        
Query: 9    aagaaatgggtaaactaaagggaaggatagacattgtaaatctacggacattgatgattt 68
            |||||||| ||||||||| |   |||||||||||||  ||||| ||||| ||||||||||
Sbjct: 1858 aagaaatgtgtaaactaaggaagaggatagacattgctaatctgcggactttgatgattt 1917

                              
Query: 69   ttagagaatatgaagaag 86
            ||||||||||||||||||
Sbjct: 1918 ttagagaatatgaagaag 1935



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                   
Query: 179  aggttttcaaaacttatccatctccagtacctccaaatt 217
            |||||||||||||||||||| |||||||||||| |||||
Sbjct: 2031 aggttttcaaaacttatccacctccagtacctcaaaatt 2069
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>emb|AJ507089.1|HVU507089 Hordeum vulgare partial mRNA for NBS-LRR disease resistance protein
            homologue (rga S-197-4 gene)
          Length = 4901

 Score =  107 bits (54), Expect = 3e-20
 Identities = 165/202 (81%)
 Strand = Plus / Plus

                                                                        
Query: 237  aaatgactttacctagcacactatccagattttatcacttgaaattcttggacctaatta 296
            |||||| ||| ||||| | |||||| ||||||||||||||||||||||||||||||  | 
Sbjct: 2172 aaatgagtttgcctagtaaactatcaagattttatcacttgaaattcttggacctagatg 2231

                                                                        
Query: 297  gttggcatggtagttctaacttgcctaaagacattggtcgtcttgtgaatttacgcgatt 356
            |||||| |||  ||||| | |||||| ||||| || | |  |||| ||||||||  ||||
Sbjct: 2232 gttggcgtgggggttctgatttgcctgaagactttagccaccttgagaatttacatgatt 2291

                                                                        
Query: 357  tcttcgctagaaaagaactccactccaatgttcctgaggctggaaagatgaagtatctgc 416
            ||   |||||||  ||||||||||||||| |||   | |  |||||||||||| ||||||
Sbjct: 2292 tccatgctagaagtgaactccactccaatattcgcaatgtcggaaagatgaagcatctgc 2351

                                  
Query: 417  gggagctaaaagaattccatgt 438
             |||||| ||||||||||||||
Sbjct: 2352 aggagctgaaagaattccatgt 2373



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                        
Query: 9    aagaaatgggtaaactaaagggaaggatagacattgtaaatctacggacattgatgattt 68
            |||||||| ||||||||| ||  | |||||||||||  ||||| ||||| ||||||||||
Sbjct: 1938 aagaaatgtgtaaactaagggagatgatagacattgctaatctgcggactttgatgattt 1997

                              
Query: 69   ttagagaatatgaagaag 86
            | |||  |||||||||||
Sbjct: 1998 tcagaagatatgaagaag 2015



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 179  aggttttcaaaacttatccatctccagtacctc 211
            |||||||| ||||||||||| ||||||||||||
Sbjct: 2111 aggttttcgaaacttatccacctccagtacctc 2143
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>gb|AY123940.1| Aegilops tauschii putative RGA protein 567B-3.2 gene, partial cds
          Length = 3303

 Score =  101 bits (51), Expect = 2e-18
 Identities = 159/195 (81%)
 Strand = Plus / Plus

                                                                       
Query: 244 tttacctagcacactatccagattttatcacttgaaattcttggacctaattagttggca 303
           ||||||||| |||||||| ||||||||||||||||||||| ||||||||  |  |||| |
Sbjct: 617 tttacctagtacactatcaagattttatcacttgaaattcctggacctagatgattggaa 676

                                                                       
Query: 304 tggtagttctaacttgcctaaagacattggtcgtcttgtgaatttacgcgatttcttcgc 363
           |||| ||||| | || ||| ||||| |  | |  |||| ||||||||  ||||||   ||
Sbjct: 677 tggtcgttctgatttacctgaagacttcagccaccttgagaatttacatgatttccgtgc 736

                                                                       
Query: 364 tagaaaagaactccactccaatgttcctgaggctggaaagatgaagtatctgcgggagct 423
           | |||  ||||||||||||||| |||   | | ||||||||||||| |||||| ||||||
Sbjct: 737 tggaagtgaactccactccaatattcgcaatgttggaaagatgaagcatctgcaggagct 796

                          
Query: 424 aaaagaattccatgt 438
           |||||||||||||||
Sbjct: 797 aaaagaattccatgt 811



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 171/212 (80%), Gaps = 3/212 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   aagaaatgggtaaactaaagggaaggatagacattgtaaatctacggacattgatgattt 68
           |||||||| ||||||||| ||  |||||||||||||  ||||| ||||| ||||||||||
Sbjct: 376 aagaaatgtgtaaactaagggagaggatagacattgctaatctgcggactttgatgattt 435

                                                                       
Query: 69  ttagagaatatgaagaaggaatcattg---agatcttaaaagatacatttatggaaacaa 125
            ||||  ||||||||||| ||  ||||   |||| || |||||||  || | ||||| ||
Sbjct: 436 gtagaagatatgaagaagaaagaattgccaagattttgaaagatagcttcaaggaaataa 495

                                                                       
Query: 126 aaggcttgcgtgtcctatttatagcagtgaagtcccttgaatctctaccacaaaggtttt 185
           |  |  ||||||||||||||||||||||||   | |  |||||| | ||| | |||||||
Sbjct: 496 atagtctgcgtgtcctatttatagcagtgagtactccagaatcttttccatataggtttt 555

                                           
Query: 186 caaaacttatccatctccagtacctccaaatt 217
           ||||||| ||||| |||||||||||| |||||
Sbjct: 556 caaaactgatccacctccagtacctcaaaatt 587
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>emb|AJ507101.1|HVU507101 Hordeum vulgare partial mRNA for NBS-LRR disease resistance protein
            homologue (rga S-T21 gene)
          Length = 4711

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 169/209 (80%)
 Strand = Plus / Plus

                                                                        
Query: 9    aagaaatgggtaaactaaagggaaggatagacattgtaaatctacggacattgatgattt 68
            |||||||| ||||||||| ||  |||||||||||||  ||||| ||||| ||||||||||
Sbjct: 1943 aagaaatgtgtaaactaagggagaggatagacattgctaatctgcggactttgatgattt 2002

                                                                        
Query: 69   ttagagaatatgaagaaggaatcattgagatcttaaaagatacatttatggaaacaaaag 128
            | |||  |||| ||||| ||||||   |||| ||  ||||||  || | ||||| |||  
Sbjct: 2003 tcagaagatatcaagaaagaatcaccaagattttggaagatagcttcaaggaaataaata 2062

                                                                        
Query: 129  gcttgcgtgtcctatttatagcagtgaagtcccttgaatctctaccacaaaggttttcaa 188
            |  ||||||||||||||||||  ||||||||    |||||| | ||| | ||||||||||
Sbjct: 2063 gtctgcgtgtcctatttatagtggtgaagtctgcagaatcttttccatataggttttcaa 2122

                                         
Query: 189  aacttatccatctccagtacctccaaatt 217
            |||||||||| |||||||||||| |||||
Sbjct: 2123 aacttatccacctccagtacctcaaaatt 2151



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                            
Query: 245  ttacctagcacactatccagattttatcacttgaaattcttggaccta 292
            |||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct: 2185 ttacctggtacactatcaagattttatcacttgaaattcttggaccta 2232



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 398  ggaaagatgaagtatctgcgggagctaaaagaattccatgt 438
            |||||||||||| |||||| |||||| ||||||||||||||
Sbjct: 2350 ggaaagatgaagcatctgcaggagctgaaagaattccatgt 2390
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>gb|AY123939.1| Aegilops tauschii putative RGA protein 567A-4.7 gene, partial cds
          Length = 4690

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                        
Query: 245  ttacctagcacactatccagattttatcacttgaaattcttggacctaattagttggcat 304
            |||||||| |||||||| ||||||||||||||||||||| ||||||||  |  ||||| |
Sbjct: 4043 ttacctagtacactatcaagattttatcacttgaaattcctggacctagatgattggcgt 3984

                                    
Query: 305  ggtagttctaacttgcctaaagac 328
            ||||||||| | |||||| |||||
Sbjct: 3983 ggtagttctgatttgcctgaagac 3960



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                        
Query: 7    ggaagaaatgggtaaactaaagggaaggatagacattgtaaatctacggacattgatgat 66
            ||||||||||  |||||||| ||  | |||||||||||  ||| | ||||| ||||||||
Sbjct: 4287 ggaagaaatgtctaaactaagggagaagatagacattgctaatgtgcggactttgatgat 4228

                                
Query: 67   ttttagagaatatgaagaag 86
            ||||||||||||||||||||
Sbjct: 4227 ttttagagaatatgaagaag 4208



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 181  gttttcaaaacttatccatctccagtacctccaaatt 217
            |||||||||||||||||| |||||||||||| |||||
Sbjct: 4110 gttttcaaaacttatccacctccagtacctcaaaatt 4074
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                          
Query: 362    gctagaaaagaactccactccaatgttcctgaggctggaaagatgaagtatctgcgggag 421
              |||| ||||||| |||| |||||||||||||||| ||| || ||||||| | | |  |||
Sbjct: 711309 gctaaaaaagaattccattccaatgttcctgaggttgggaaaatgaagtgtttacaagag 711368

                               
Query: 422    ctaaaagaattccatgt 438
              || ||||||||||||||
Sbjct: 711369 ctcaaagaattccatgt 711385



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                          
Query: 362    gctagaaaagaactccactccaatgttcctgaggctggaaagatgaagtatctgcgggag 421
              |||| ||||||| |||| |||||||||||||||| ||| || ||||||| | | |  |||
Sbjct: 691000 gctaaaaaagaattccattccaatgttcctgaggttgggaaaatgaagtgtttacaagag 691059

                               
Query: 422    ctaaaagaattccatgt 438
              || ||||||||||||||
Sbjct: 691060 ctcaaagaattccatgt 691076



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 267    tttatcacttgaaattcttgga 288
              ||||||||||||||||||||||
Sbjct: 711211 tttatcacttgaaattcttgga 711232



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 267    tttatcacttgaaattcttgga 288
              ||||||||||||||||||||||
Sbjct: 690902 tttatcacttgaaattcttgga 690923
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>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032H19
          Length = 126434

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                         
Query: 362   gctagaaaagaactccactccaatgttcctgaggctggaaagatgaagtatctgcgggag 421
             |||| ||||||| |||| |||||||||||||||| ||| || ||||||| | | |  |||
Sbjct: 95053 gctaaaaaagaattccattccaatgttcctgaggttgggaaaatgaagtgtttacaagag 95112

                              
Query: 422   ctaaaagaattccatgt 438
             || ||||||||||||||
Sbjct: 95113 ctcaaagaattccatgt 95129



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                         
Query: 362   gctagaaaagaactccactccaatgttcctgaggctggaaagatgaagtatctgcgggag 421
             |||| ||||||| |||| |||||||||||||||| ||| || ||||||| | | |  |||
Sbjct: 74744 gctaaaaaagaattccattccaatgttcctgaggttgggaaaatgaagtgtttacaagag 74803

                              
Query: 422   ctaaaagaattccatgt 438
             || ||||||||||||||
Sbjct: 74804 ctcaaagaattccatgt 74820



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 267   tttatcacttgaaattcttgga 288
             ||||||||||||||||||||||
Sbjct: 94955 tttatcacttgaaattcttgga 94976



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 267   tttatcacttgaaattcttgga 288
             ||||||||||||||||||||||
Sbjct: 74646 tttatcacttgaaattcttgga 74667
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 262     cagattttatcacttgaaattcttggaccta 292
               ||||||||||||||| |||||||||||||||
Sbjct: 9239038 cagattttatcacttaaaattcttggaccta 9239068



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 263     agattttatcacttgaaattcttggaccta 292
               |||||||||||||||||||| |||||||||
Sbjct: 9259259 agattttatcacttgaaatttttggaccta 9259288



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                         
Query: 35      atagacattgtaaatctacggacattgatgatttttagagaa 76
               |||||||| | |||| |||||||||||||| ||||| |||||
Sbjct: 9259031 atagacataggaaatttacggacattgatgctttttggagaa 9259072



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 263     agattttatcacttgaaattcttggaccta 292
               |||||||||||||||||| | |||||||||
Sbjct: 9159526 agattttatcacttgaaacttttggaccta 9159555
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>dbj|AP005631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0049K19
          Length = 131932

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 262   cagattttatcacttgaaattcttggaccta 292
             ||||||||||||||| |||||||||||||||
Sbjct: 98756 cagattttatcacttaaaattcttggaccta 98786



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                            
Query: 263    agattttatcacttgaaattcttggaccta 292
              |||||||||||||||||||| |||||||||
Sbjct: 118977 agattttatcacttgaaatttttggaccta 119006



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 35     atagacattgtaaatctacggacattgatgatttttagagaa 76
              |||||||| | |||| |||||||||||||| ||||| |||||
Sbjct: 118749 atagacataggaaatttacggacattgatgctttttggagaa 118790



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 263   agattttatcacttgaaattcttggaccta 292
             |||||||||||||||||| | |||||||||
Sbjct: 19244 agattttatcacttgaaacttttggaccta 19273
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>dbj|AP005924.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0011J03
          Length = 176461

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 263   agattttatcacttgaaattcttggaccta 292
             |||||||||||||||||||| |||||||||
Sbjct: 19513 agattttatcacttgaaatttttggaccta 19542



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 35    atagacattgtaaatctacggacattgatgatttttagagaa 76
             |||||||| | |||| |||||||||||||| ||||| |||||
Sbjct: 19285 atagacataggaaatttacggacattgatgctttttggagaa 19326
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>dbj|AK073576.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046M12, full
            insert sequence
          Length = 4511

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 263  agattttatcacttgaaattcttggaccta 292
            |||||||||||||||||||| |||||||||
Sbjct: 2165 agattttatcacttgaaatttttggaccta 2194



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                      
Query: 35   atagacattgtaaatctacggacattgatgatttttagagaa 76
            |||||||| | |||| |||||||||||||| ||||| |||||
Sbjct: 1937 atagacataggaaatttacggacattgatgctttttggagaa 1978
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>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                         
Query: 7     ggaagaaatgggtaaactaaagggaaggatagacattgtaaatctacggacattgatgat 66
             |||||| ||||||||| | |||| || ||||||||||  |||| | ||||  ||||||||
Sbjct: 95494 ggaagagatgggtaaattgaaggaaaagatagacattaaaaatttgcggagtttgatgat 95435

                         
Query: 67    ttttagagaata 78
             |||| |||||||
Sbjct: 95434 ttttggagaata 95423
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>emb|Z14989.1|ATUBC8 A.thaliana UBC8 gene for ubiquitin conjugating enzyme homolog
          Length = 1447

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 274 cttgaaattcttggacctaatta 296
           |||||||||||||||||||||||
Sbjct: 732 cttgaaattcttggacctaatta 754
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>dbj|AB005233.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK23
          Length = 79837

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 274   cttgaaattcttggacctaatta 296
             |||||||||||||||||||||||
Sbjct: 71632 cttgaaattcttggacctaatta 71654
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>gb|L00638.1|ATHUBCA Arabidopsis thaliana ubiquitin conjugating enzyme exons 2-4
          Length = 1447

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 274 cttgaaattcttggacctaatta 296
           |||||||||||||||||||||||
Sbjct: 732 cttgaaattcttggacctaatta 754
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>dbj|AP005777.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0026F09
          Length = 124371

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 263   agattttatcacttgaaattcttggaccta 292
             |||||||||||||||||| | |||||||||
Sbjct: 62289 agattttatcacttgaaacttttggaccta 62318
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>gb|AC165969.5| Mus musculus BAC clone RP23-141K11 from chromosome 6, complete sequence
          Length = 190936

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 366   gaaaagaactccactccaatgttcc 390
             |||||| ||||||||||||||||||
Sbjct: 37144 gaaaaggactccactccaatgttcc 37120
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>gb|AC122521.4| Mus musculus BAC clone RP24-476C7 from chromosome 6, complete sequence
          Length = 142127

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 366   gaaaagaactccactccaatgttcc 390
             |||||| ||||||||||||||||||
Sbjct: 23422 gaaaaggactccactccaatgttcc 23446
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>gb|AC121853.3| Mus musculus BAC clone RP24-96P15 from chromosome 17, complete sequence
          Length = 144510

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 374   ctccactccaatgttcctgag 394
             |||||||||||||||||||||
Sbjct: 68000 ctccactccaatgttcctgag 68020
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>gb|AC121869.2| Mus musculus BAC clone RP24-121C10 from 17, complete sequence
          Length = 182237

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 374    ctccactccaatgttcctgag 394
              |||||||||||||||||||||
Sbjct: 149801 ctccactccaatgttcctgag 149781
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>gb|AF351392.1| Gossypium hirsutum clone JESPR154 microsatellite sequence
          Length = 498

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 82  agaaggaatcattgagatctt 102
           |||||||||||||||||||||
Sbjct: 162 agaaggaatcattgagatctt 182
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>gb|AC069025.5| Homo sapiens chromosome 10 clone RP11-526G5, complete sequence
          Length = 211583

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    gagatcttaaaagatacattt 115
             |||||||||||||||||||||
Sbjct: 39109 gagatcttaaaagatacattt 39129
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>gb|AF129005.1|AF129005 Mus musculus VNO olfactory cluster
          Length = 198515

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 366    gaaaagaactccactccaatgttcc 390
              |||||| ||||||||||||||||||
Sbjct: 149326 gaaaaggactccactccaatgttcc 149350
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>gb|AC137630.9| Homo sapiens 3 BAC RP13-131K19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120173

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   tgtcctatttatagcagtgaa 156
             |||||||||||||||||||||
Sbjct: 30902 tgtcctatttatagcagtgaa 30882
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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   tgaaattcttggacctaatt 295
             ||||||||||||||||||||
Sbjct: 87875 tgaaattcttggacctaatt 87856
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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 56      acattgatgatttttagaga 75
               ||||||||||||||||||||
Sbjct: 1555129 acattgatgatttttagaga 1555110
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>ref|XM_650036.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (35.t00040)
           partial mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 423 taaaagaattccatgtgaag 442
           ||||||||||||||||||||
Sbjct: 753 taaaagaattccatgtgaag 772
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>ref|XM_723883.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01250)
            partial mRNA
          Length = 4122

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   ttttagagaatatgaagaag 86
            ||||||||||||||||||||
Sbjct: 1272 ttttagagaatatgaagaag 1291
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 116     atggaaacaaaaggcttgcg 135
               ||||||||||||||||||||
Sbjct: 3124404 atggaaacaaaaggcttgcg 3124423
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>emb|AL157413.18| Human DNA sequence from clone RP11-526K17 on chromosome 20 Contains a
             novel gene and part of the C20orf39 gene for chromosome 20
             open reading frame 39, complete sequence
          Length = 133207

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   tatcacttgaaattcttgga 288
             ||||||||||||||||||||
Sbjct: 31428 tatcacttgaaattcttgga 31447
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>emb|AL049589.15|HSJ570L12 Human DNA sequence from clone RP4-570L12 on chromosome Xq13.1-21.1
             Contains the PGK1 gene for phosphoglycerate kinase 1, the
             TAF9L gene for TAF9-like RNA polymerase II TATA box
             binding protein (TBP)-associated factor 31kDa, a novel
             pseudogene and a CpG island, complete sequence
          Length = 143508

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    tcttaaaagatacatttatggaaa 122
             |||||||| |||||||||||||||
Sbjct: 80960 tcttaaaaaatacatttatggaaa 80983
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>emb|Z54140.2|SPBC12C2 S.pombe chromosome II cosmid c12C2
          Length = 36149

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   atttatggaaacaaaaggct 131
             ||||||||||||||||||||
Sbjct: 30235 atttatggaaacaaaaggct 30216
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>emb|X72584.1|CHCRTRNAV C.reflexa chloroplast genes trnA, trnI, trnV, rps7, rpS12, ndhB and
            16S rDNA
          Length = 8807

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   ttgatgatttttagagaata 78
            ||||||||||||||||||||
Sbjct: 8413 ttgatgatttttagagaata 8394
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>gb|AC106857.8| Homo sapiens chromosome 8, clone RP11-262O21, complete sequence
          Length = 159454

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   atttatggaaacaaaaggct 131
             ||||||||||||||||||||
Sbjct: 39111 atttatggaaacaaaaggct 39092
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>gb|AC022666.14| Homo sapiens, clone RP11-30K7, complete sequence
          Length = 150721

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    atttatggaaacaaaaggct 131
              ||||||||||||||||||||
Sbjct: 105953 atttatggaaacaaaaggct 105972
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>gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, complete sequence
          Length = 160545

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     tgatgatttttagagaatat 79
              ||||||||||||||||||||
Sbjct: 106956 tgatgatttttagagaatat 106975
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>gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, complete sequence
          Length = 180535

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    tgatgatttttagagaatat 79
             ||||||||||||||||||||
Sbjct: 25924 tgatgatttttagagaatat 25905
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>gb|AC146532.3| Otolemur garnettii clone CH256-151F13, complete sequence
          Length = 197659

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   acattgatgatttttagaga 75
            ||||||||||||||||||||
Sbjct: 9698 acattgatgatttttagaga 9679
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>dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12
          Length = 87434

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   cacaaaggttttcaaaactt 193
             ||||||||||||||||||||
Sbjct: 13253 cacaaaggttttcaaaactt 13234
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>gb|AC133598.4| Mus musculus BAC clone RP24-374G16 from 13, complete sequence
          Length = 170544

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   tccagattttatcacttgaa 279
             ||||||||||||||||||||
Sbjct: 51578 tccagattttatcacttgaa 51597
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>emb|CT025633.3| Pan troglodytes chromosome X clone RP43-007L03 map Xq28, complete
              sequence
          Length = 205943

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     tcttaaaagatacatttatggaaa 122
              |||||||| |||||||||||||||
Sbjct: 154749 tcttaaaaaatacatttatggaaa 154772
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>gb|AC138617.4| Mus musculus BAC clone RP23-403G9 from 8, complete sequence
          Length = 204919

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 383    aatgttcctgaggctggaaagatg 406
              |||| |||||||||||||||||||
Sbjct: 124060 aatgctcctgaggctggaaagatg 124037
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>emb|AL929007.6| Zebrafish DNA sequence from clone CH211-235E9 in linkage group 1,
             complete sequence
          Length = 187464

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   ttgaatctctaccacaaagg 181
             ||||||||||||||||||||
Sbjct: 24694 ttgaatctctaccacaaagg 24675
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>gb|U01017.1|U01017 Saccharomyces cerevisiae Fab1p (FAB1) gene, complete cds
          Length = 8964

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 101  ttaaaagatacatttatggaaaca 124
            ||||||| ||||||||||||||||
Sbjct: 3833 ttaaaagctacatttatggaaaca 3856
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>emb|AL844893.9| Mouse DNA sequence from clone RP23-355H24 on chromosome 2, complete
             sequence
          Length = 175570

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   cctatttatagcagtgaagt 158
             ||||||||||||||||||||
Sbjct: 98260 cctatttatagcagtgaagt 98279
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>dbj|D50617.1|YSCCHRVIN Saccharomyces cerevisiae chromosome VI complete DNA sequence
          Length = 270148

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 101    ttaaaagatacatttatggaaaca 124
              ||||||| ||||||||||||||||
Sbjct: 187463 ttaaaagctacatttatggaaaca 187486


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,603,612
Number of Sequences: 3902068
Number of extensions: 4603612
Number of successful extensions: 98763
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98548
Number of HSP's gapped (non-prelim): 208
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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