>LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related protein 3|
           precursor (hLRp105)
          Length = 770

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = +1

Query: 43  GQISLVTTSVHRHLPLAPSSLAPRVGGTPCPPAPTSPRGETLAAAD 180
           GQI L+T +      L    L P  G  P PPAP    G T AA D
Sbjct: 620 GQIPLLTAARPSQTVLGDGFLQPAPGAAPDPPAPLMDTGSTRAAGD 665

>Y770_MYCTU (P71825) Hypothetical oxidoreductase Rv0770/MT0794 (EC 1.1.-.-)|
          Length = 295

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 7   RPVVERERGLGAGQISLVTT---SVHRHLPLAPSSLAPRVGGTPCPPAPTSPRGET 165
           RP++E  RGLG   +SL       V   LPLA  +L     G   P   T P  ET
Sbjct: 240 RPLLEHTRGLGEKDLSLALALGEVVSVDLPLAQLALQRLAAGLGVPHPDTEPAKET 295

>RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 82  LPLAPSSLAPRVGGTPCPPAPTSP 153
           LPL PSS AP +GG+  PP P  P
Sbjct: 103 LPLPPSS-APTLGGSGAPPPPPMP 125

>GLIS1_HUMAN (Q8NBF1) Zinc finger protein GLIS1 (GLI-similar 1)|
          Length = 620

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 10  PVVERER-GLGAGQISLVTTSVHR--HLPLAPSSLAPRVGGTPCPPAPTSP 153
           P+ E  R GLG G +S + + +      PL PSS +   GG P P  P+ P
Sbjct: 445 PMAESTRDGLGPGLLSPIVSPLKGLGPPPLPPSSQSHSPGGQPFPTLPSKP 495

>CCG8_RAT (Q8VHW5) Voltage-dependent calcium channel gamma-8 subunit|
           (Neuronal voltage-gated calcium channel gamma-8 subunit)
          Length = 421

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = +1

Query: 19  ERERGLGAGQISLVTTSVHRHLPLAPSS------LAPRVGGTPCPPAPTSPRGETLA 171
           ER+RG  AG ++L     H   P   +S        P     P PPAP +P   TL+
Sbjct: 352 ERDRGSSAGFLTL-----HNAFPKEAASGVTVTVTGPPAAPAPAPPAPAAPAPGTLS 403

>VSX1_BOVIN (Q9GMA3) Visual system homeobox 1 (Transcription factor VSX1)|
           (Retinal inner nuclear layer homeobox protein)
           (Homeodomain protein RINX)
          Length = 365

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 85  PLAPSSLAPRVGGTPCPPAPTSPRGETLAAAD 180
           P  P  LAPR  G P P A    R E+++ +D
Sbjct: 111 PEGPEPLAPRFPGRPPPSAARQKRSESVSTSD 142

>YBOX2_HUMAN (Q9Y2T7) Y-box-binding protein 2 (Germ cell-specific Y-box-binding|
           protein) (Contrin) (MSY2 homolog)
          Length = 364

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = +1

Query: 10  PVVERERGLGAGQISLVTTSVHRHLPLAPSSLAP-----RVGGTPCPPAPTSPRGETLA 171
           P  E ++G GAG      +      P AP S  P      V GTP PPA +      LA
Sbjct: 33  PAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSGTPAPPARSQADKPVLA 91

>ODP2_HUMAN (P10515) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex, mitochondrial precursor
           (EC 2.3.1.12) (Pyruvate dehydrogenase complex E2
           subunit) (PDCE2) (E2) (Dihydrolipoamide
           S-acetyltransferase component
          Length = 614

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 82  LPLAPSSLAPRVGGTPCPPAPTSPRG 159
           +P  P  LAP    TPCP  P  P+G
Sbjct: 296 VPPTPQPLAP-TPSTPCPATPAGPKG 320

>PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a (OsPIN3a)|
          Length = 618

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 115 VGGTPCPPAPTSPRGETLAAADL 183
           VGG P PP P + RG +  A++L
Sbjct: 257 VGGGPPPPTPAAVRGSSFGASEL 279

>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)|
          Length = 1411

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 88  LAPSSLAPRVGGTPCPPAPTSP 153
           LAP+  +PR G  P PP  T P
Sbjct: 823 LAPAKESPRKGAAPTPPGKTGP 844

>TLX2_MOUSE (Q61663) T-cell leukemia homeobox protein 2 (Homeobox protein|
           Hox-11L1) (Homeobox TLX-2) (PMUR10F)
          Length = 284

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 28  RGLGAGQISLVTTSVHRHLPLAPSSLAPRVGGTPCPPAPTSPRG 159
           RG G G   ++    HR LP+ P S     G  P  P P+   G
Sbjct: 71  RGSGVGPGGVIRVPAHRPLPVPPPS-----GAAPAVPGPSGLGG 109

>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC|
           3.1.3.48) (His-domain-containing protein tyrosine
           phosphatase) (HD-PTP) (Protein tyrosine phosphatase
           TD14) (PTP-TD14)
          Length = 1636

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 61  TTSVHRHLPLAPSSLAPRVGGTPCPPAPTSP 153
           TT+V       PS  APR   TP PP P  P
Sbjct: 881 TTTVDSIQAPIPSHTAPRPNPTPAPPPPCFP 911

>MAP4_BOVIN (P36225) Microtubule-associated protein 4 (MAP 4)|
            (Microtubule-associated protein-U) (MAP-U)
          Length = 1072

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 79   HLPLAPSSLAPRVGGTPCPPAPTSPRGETLA 171
            HLP A  ++    GG+  PP P  P GE LA
Sbjct: 994  HLP-AGGAVKTEGGGSEAPPCPGPPAGEELA 1023

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 91  APSSLAPRVGGTPCPPAPTSP 153
           AP S AP V  +P PP+P SP
Sbjct: 203 APPSPAPPVPPSPAPPSPPSP 223

>DRD4_HUMAN (P21917) D(4) dopamine receptor (Dopamine D4 receptor) (D(2C)|
           dopamine receptor)
          Length = 467

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = +1

Query: 85  PLAPSSLAPRVGGTPC-----PPAPTSPRG 159
           P +P+  APR+   PC     PPAP  PRG
Sbjct: 243 PPSPTPPAPRLPQDPCGPDCAPPAPGLPRG 272

>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding|
           protein) (FRGY2 homolog)
          Length = 360

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 31  GLGAGQISLVTTSVHRHLPLAPSSLAPRVGGTPCPPAPTSPRGETLA 171
           G GA       T +H   P  P + A    GTP PPA +      LA
Sbjct: 47  GGGAASGPAAGTPLHAPGPRTPGNQATAASGTPAPPARSQADKPVLA 93

>COLQ_TORMA (Q03637) Acetylcholinesterase collagenic tail peptide precursor|
           (AChE Q subunit)
          Length = 471

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 94  PSSLAPR-VGGTPCPPAPTSPRGE 162
           P    PR + G+PC P P  PRGE
Sbjct: 153 PGVRGPRGMPGSPCSPGPIGPRGE 176


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,296,623
Number of Sequences: 219361
Number of extensions: 414496
Number of successful extensions: 2229
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2216
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)