Clone Information

BLAST Search Result

Clone Name	bastl33h09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YGF0_YEAST (P53177) Hypothetical 30.8 kDa protein in DUP2-TIF463...	58	5e-09
2	Y1069_PYRHO (O58796) UPF0130 protein PH1069	45	6e-05
3	Y1098_PYRFU (Q8U1V7) UPF0130 protein PF1098	44	7e-05
4	Y917_PYRAB (Q9V074) UPF0130 protein PYRAB09170	44	1e-04
5	Y175_PYRKO (Q5JFK6) UPF0130 protein TK0175	43	2e-04
6	Y289_PYRAB (Q9V1Y5) UPF0130 protein PYRAB02890	42	4e-04
7	Y1907_PYRKO (Q5JES6) UPF0130 protein TK1907	42	5e-04
8	Y1887_PYRHO (O59533) UPF0130 protein PH1887	40	0.001
9	Y2059_ARCFU (O28220) UPF0130 protein AF2059	39	0.003
10	Y2034_PYRFU (Q8TZG0) UPF0130 protein PF2034	39	0.004
11	Y1510_METJA (Q58905) UPF0130 protein MJ1510	38	0.007
12	Y425_CAUCR (Q9AB09) Hypothetical UPF0324 membrane protein CC0425	33	0.13
13	VGLG_TRTV (P33495) Major surface glycoprotein G (Attachment glyc...	33	0.17
14	YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'regio...	32	0.38
15	SEM6C_HUMAN (Q9H3T2) Semaphorin-6C precursor (Semaphorin Y) (Sem...	31	0.84
16	SEM6C_RAT (Q9WTL3) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)	30	1.1
17	SEM6C_MOUSE (Q9WTM3) Semaphorin-6C precursor (Semaphorin Y) (Sem...	30	1.4
18	RL10_YEAST (P41805) 60S ribosomal protein L10 (L9) (Ubiquinol-cy...	30	1.4
19	ESR2_ANGJA (O13012) Estrogen receptor beta (ER-beta)	30	1.9
20	ABI3_HUMAN (Q9P2A4) ABI gene family member 3 (New molecule inclu...	30	1.9
21	CAD23_RAT (P58365) Cadherin-23 precursor (Otocadherin)	29	3.2
22	CAD23_MOUSE (Q99PF4) Cadherin-23 precursor (Otocadherin)	29	3.2
23	CAD23_HUMAN (Q9H251) Cadherin-23 precursor (Otocadherin)	29	3.2
24	RL10_ARATH (Q08770) 60S ribosomal protein L10 (Wilm tumor suppre...	29	3.2
25	MYEOV_HUMAN (Q96EZ4) Myeloma overexpressed gene protein (Oncogen...	29	3.2
26	MUS81_KLULA (Q6CPQ8) Crossover junction endonuclease MUS81 (EC 3...	29	3.2
27	SOP2_CAEEL (Q965H3) Polycomb protein sop-2 (Suppressor of pal-1 ...	28	4.2
28	RL10_VITRI (Q9SPB3) 60S ribosomal protein L10 (QM protein homolog)	28	4.2
29	IF2_BRAJA (Q89WA9) Translation initiation factor IF-2	28	5.5
30	RL10_PINTA (O22431) 60S ribosomal protein L10 (Wilm's tumor supp...	28	5.5
31	LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor	28	5.5
32	RL101_ORYSA (P45635) 60S ribosomal protein L10-1 (Putative tumor...	28	5.5
33	RL10_TOBAC (Q40592) 60S ribosomal protein L10 (QM protein homolo...	28	7.1
34	PKHA6_MOUSE (Q7TQG1) Pleckstrin homology domain-containing famil...	28	7.1
35	SYI_BDEBA (Q6MKX0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	28	7.1
36	RL10_SOLME (P93847) 60S ribosomal protein L10 (EQM)	28	7.1
37	ERMA_ARTS3 (P09891) rRNA adenine N-6-methyltransferase (EC 2.1.1...	28	7.1
38	TNR21_HUMAN (O75509) Tumor necrosis factor receptor superfamily ...	28	7.1
39	BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11....	28	7.1
40	GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains:...	28	7.1
41	RL10_EUPES (Q9M5M7) 60S ribosomal protein L10	28	7.1
42	PKHA6_HUMAN (Q9Y2H5) Pleckstrin homology domain-containing famil...	27	9.3
43	CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel al...	27	9.3
44	ANDR_RANCA (Q7T1K4) Androgen receptor (Dihydrotestosterone recep...	27	9.3
45	RL103_ORYSA (Q40649) 60S ribosomal protein L10-3 (QM/R22)	27	9.3
46	Y622_SULSO (Q9UX16) UPF0130 protein SSO0622	27	9.3
47	WN10A_HUMAN (Q9GZT5) Protein Wnt-10a precursor	27	9.3
48	RL102_ORYSA (P45636) 60S ribosomal protein L10-2 (Putative tumor...	27	9.3
49	RL10_MAIZE (P45633) 60S ribosomal protein L10 (QM protein homolog)	27	9.3

>YGF0_YEAST (P53177) Hypothetical 30.8 kDa protein in DUP2-TIF4632 intergenic|
           region
          Length = 273

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 27/62 (43%), Positives = 40/62 (64%)
 Frame = +3

Query: 105 GGVDAPIAPLLDALNSHADLFTTSSCSGRISVLAQPSPQSQAADPKPKKKARGGGWLYIS 284
           G +D    P++D +N+ AD+ TTSSCSGR+SV  +   +S   + K   K +GG WLY++
Sbjct: 29  GTIDELCLPIIDLINASADMVTTSSCSGRVSVFLE-GTKSYNGEVKIGGKGQGGKWLYVT 87

Query: 285 HD 290
           HD
Sbjct: 88  HD 89

to top

>Y1069_PYRHO (O58796) UPF0130 protein PH1069|
          Length = 196

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/36 (61%), Positives = 25/36 (69%)
 Frame = +3

Query: 105 GGVDAPIAPLLDALNSHADLFTTSSCSGRISVLAQP 212
           G VD  I PLL  +NS  + FTTSSCSGRISV+  P
Sbjct: 25  GEVDEDIIPLLKKINSIENYFTTSSCSGRISVMEMP 60

to top

>Y1098_PYRFU (Q8U1V7) UPF0130 protein PF1098|
          Length = 196

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 22/36 (61%), Positives = 25/36 (69%)
 Frame = +3

Query: 105 GGVDAPIAPLLDALNSHADLFTTSSCSGRISVLAQP 212
           G VD  I PLL  +NS  + FTTSSCSGRISV+  P
Sbjct: 25  GEVDEDIIPLLKKINSLDNYFTTSSCSGRISVMEMP 60

to top

>Y917_PYRAB (Q9V074) UPF0130 protein PYRAB09170|
          Length = 194

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +3

Query: 105 GGVDAPIAPLLDALNSHADLFTTSSCSGRISVLAQP 212
           G VD  I PLL  +N   + FTTSSCSGRIS++  P
Sbjct: 25  GEVDEDIIPLLKKINEKPNYFTTSSCSGRISIMEMP 60

to top

>Y175_PYRKO (Q5JFK6) UPF0130 protein TK0175|
          Length = 198

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +3

Query: 111 VDAPIAPLLDALNSHADLFTTSSCSGRISVLAQP 212
           VD  I PLL+ +N+  + FTTSSCSGRISV+  P
Sbjct: 28  VDHDIIPLLEKINALQNYFTTSSCSGRISVMEMP 61

to top

>Y289_PYRAB (Q9V1Y5) UPF0130 protein PYRAB02890|
          Length = 206

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 26/73 (35%), Positives = 37/73 (50%)
 Frame = +3

Query: 105 GGVDAPIAPLLDALNSHADLFTTSSCSGRISVLAQPSPQSQAADPKPKKKARGGGWLYIS 284
           G VD  I  LL  +NS   ++TTSSCSGRI ++ +PS        KP  +     WL   
Sbjct: 18  GKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEPS-----LGAKPLSR-----WLIKV 67

Query: 285 HDPADPDAVVELL 323
           H P + +  ++ L
Sbjct: 68  HRPMEFEEAIDAL 80

to top

>Y1907_PYRKO (Q5JES6) UPF0130 protein TK1907|
          Length = 212

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 27/73 (36%), Positives = 36/73 (49%)
 Frame = +3

Query: 105 GGVDAPIAPLLDALNSHADLFTTSSCSGRISVLAQPSPQSQAADPKPKKKARGGGWLYIS 284
           G VD  I  LL  +NS   ++TTSSCSGRI ++ +P     A   KP  +     WL   
Sbjct: 18  GKVDGDIIDLLLLINSIKGIYTTSSCSGRIGIIEEP-----ALGAKPLSR-----WLIKV 67

Query: 285 HDPADPDAVVELL 323
           H P + +   E L
Sbjct: 68  HRPIEFEEAKEAL 80

to top

>Y1887_PYRHO (O59533) UPF0130 protein PH1887|
          Length = 206

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +3

Query: 111 VDAPIAPLLDALNSHADLFTTSSCSGRISVLAQPS 215
           VD+ I  LL  +NS   ++TTSSCSGRI +L +PS
Sbjct: 20  VDSDIIDLLLLINSIKGIYTTSSCSGRIGILEEPS 54

to top

>Y2059_ARCFU (O28220) UPF0130 protein AF2059|
          Length = 196

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +3

Query: 111 VDAPIAPLLDALNSHADLFTTSSCSGRISVLAQPSPQSQAA 233
           VD  I  LLD +NS  D  T SSCSGRI+V+    P  +A+
Sbjct: 23  VDFDIVELLDLINSFDDFVTLSSCSGRIAVVDLEKPGDKAS 63

to top

>Y2034_PYRFU (Q8TZG0) UPF0130 protein PF2034|
          Length = 206

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +3

Query: 111 VDAPIAPLLDALNSHADLFTTSSCSGRISVLAQPS 215
           VD  I  LL  +NS   ++TTSSCSGRI ++ +PS
Sbjct: 20  VDEDIVELLLLINSIKGVYTTSSCSGRIGIIEEPS 54

to top

>Y1510_METJA (Q58905) UPF0130 protein MJ1510|
          Length = 193

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 25/73 (34%), Positives = 35/73 (47%)
 Frame = +3

Query: 105 GGVDAPIAPLLDALNSHADLFTTSSCSGRISVLAQPSPQSQAADPKPKKKARGGGWLYIS 284
           G VD  I P+L+ +N   + +TTSSC GR+ ++  P       D  PK  +R   WL   
Sbjct: 21  GLVDEEIIPILNKINEIDNYYTTSSCIGRVGIMEIPK------DKNPKLYSR---WLGKW 71

Query: 285 HDPADPDAVVELL 323
           H  A  D +   L
Sbjct: 72  HHYASYDELFNAL 84

to top

>Y425_CAUCR (Q9AB09) Hypothetical UPF0324 membrane protein CC0425|
          Length = 465

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = -1

Query: 363 HPLHPSLRIQSH---------RTGAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAAR 211
           HP  P+LR+++H         R     LR G+R   R    RR  P  +A    LG AAR
Sbjct: 86  HPWRPALRLRAHRQPDRAPPARASEQPLRQGRRALRRRPDQRRHRPRMTAAALRLG-AAR 144

Query: 210 VARGLRCG 187
           +  GL  G
Sbjct: 145 IGPGLLAG 152

to top

>VGLG_TRTV (P33495) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 391

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 333 SHRTGAPQLRPGQRGRARCTTTRRPGPSS 247
           +H++G PQ  PG     + TT R PGP++
Sbjct: 224 THKSGPPQALPGSNTNGKTTTDREPGPTN 252

to top

>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -1

Query: 366 AHPLHPSLRIQSHRTGAPQLR-PGQRGRARCTTTR--RPGPSSSAWGRPLGTAARVARGL 196
           AHP    LR Q    G P+ R P +RGR+R T  R  R  P  +  G P    AR  RG 
Sbjct: 152 AHPRRQRLREQPRHAGRPRRRQPPRRGRSRGTHRRHLRQAPRPAVRG-PDEDQAREFRGP 210

Query: 195 RCGRSR 178
           R  R R
Sbjct: 211 RHRRER 216

to top

>SEM6C_HUMAN (Q9H3T2) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)|
          Length = 930

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 191 HLSPRATLAAVPSGRPQAEEEGPGRRVVVHLARP 292
           H +P A L  VPSG P     GPG+  +++L RP
Sbjct: 857 HRAPPALLTRVPSGGPSRYSGGPGKH-LLYLGRP 889

to top

>SEM6C_RAT (Q9WTL3) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)|
          Length = 960

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 191 HLSPRATLAAVPSGRPQAEEEGPGRRVVVHLARP 292
           H +P   L  VPSG P     GPGR  +++L RP
Sbjct: 890 HRAPPGLLTRVPSGGPSRYSGGPGRH-LLYLGRP 922

to top

>SEM6C_MOUSE (Q9WTM3) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)|
          Length = 931

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 191 HLSPRATLAAVPSGRPQAEEEGPGRRVVVHLARP 292
           H +P   L  VPSG P     GPGR  +++L RP
Sbjct: 861 HRAPPGLLTRVPSGGPARYSGGPGRH-LLYLGRP 893

to top

>RL10_YEAST (P41805) 60S ribosomal protein L10 (L9) (Ubiquinol-cytochrome C|
           reductase complex subunit VI-requiring protein)
          Length = 221

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 369 RAHPLHPSLRIQSHRT--GAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVARG 199
           R HP H  LRI    +  GA +L+ G RG               AWG+P G AARV  G
Sbjct: 90  RVHPFHV-LRINKMLSCAGADRLQQGMRG---------------AWGKPHGLAARVDIG 132

to top

>ESR2_ANGJA (O13012) Estrogen receptor beta (ER-beta)|
          Length = 573

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 123 IAPLLDALNSHADLFTTSSCSGRISVLAQPSPQSQAADPKP 245
           + PL D L    D  T  S     S  +QPSP SQAA  +P
Sbjct: 513 VVPLYDLLLEMLDANTMHSSRMSASYSSQPSPWSQAAQSQP 553

to top

>ABI3_HUMAN (Q9P2A4) ABI gene family member 3 (New molecule including SH3)|
           (Nesh)
          Length = 366

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 111 VDAPIAP--LLDALNSHADLFTTSSCSGRISVLAQPSPQSQAADPKPKKKARGGGWLYIS 284
           V  P+ P   L A +S + L +  S  G   V   P+P+ QAA P P         L  S
Sbjct: 192 VHLPVVPDGRLSAASSASSLASAGSAEG---VGGAPTPKGQAAPPAPP--------LPSS 240

Query: 285 HDPADPDAVVEL 320
            DP  P A VE+
Sbjct: 241 LDPPPPPAAVEV 252

to top

>CAD23_RAT (P58365) Cadherin-23 precursor (Otocadherin)|
          Length = 3317

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 152  PRGSLHHVLLLRPHLSPRATLAAVPSGRPQAEEEGPGRRVVVHLA 286
            P+GS  + LL  P  SPR TL    +G   A +EGP   V   +A
Sbjct: 2724 PKGSPQYQLLTVPEHSPRGTLVGNVTGAVDA-DEGPNAIVYYFIA 2767

to top

>CAD23_MOUSE (Q99PF4) Cadherin-23 precursor (Otocadherin)|
          Length = 3354

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 152  PRGSLHHVLLLRPHLSPRATLAAVPSGRPQAEEEGPGRRVVVHLA 286
            P+GS  + LL  P  SPR TL    +G   A +EGP   V   +A
Sbjct: 2726 PKGSPQYQLLTVPEHSPRGTLVGNVTGAVDA-DEGPNAIVYYFIA 2769

to top

>CAD23_HUMAN (Q9H251) Cadherin-23 precursor (Otocadherin)|
          Length = 3354

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 152  PRGSLHHVLLLRPHLSPRATLAAVPSGRPQAEEEGPGRRVVVHLA 286
            P+GS  + LL  P  SPR TL    +G   A +EGP   V   +A
Sbjct: 2726 PKGSPQYQLLTVPEHSPRGTLVGNVTGAVDA-DEGPNAIVYYFIA 2769

to top

>RL10_ARATH (Q08770) 60S ribosomal protein L10 (Wilm tumor suppressor protein|
           homolog)
          Length = 221

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 369 RAHPLHPSLRIQSHRT--GAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVARG 199
           R HP H  LRI    +  GA +L+ G RG               A+G+ LGT ARVA G
Sbjct: 90  RVHPFHV-LRINKMLSCAGADRLQTGMRG---------------AFGKALGTCARVAIG 132

to top

>MYEOV_HUMAN (Q96EZ4) Myeloma overexpressed gene protein (Oncogene in multiple|
           myeloma)
          Length = 313

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 297 QRGRARCTTTRR-PGPSSSAWGRPLGTA 217
           +RGR  C T  R P P  S WG PL  A
Sbjct: 230 ERGRRACLTLHRHPTPHCSTWGLPLRVA 257

to top

>MUS81_KLULA (Q6CPQ8) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 614

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +3

Query: 138 DALNSHADLFTTSSCSGRISVLAQPSPQSQAADPKPKKKARGGGWLYISHDPADPDA 308
           ++ NS       ++ S RI    +P   ++ + P PK+K   G W  + ++   PD+
Sbjct: 273 ESANSSRLFLDATANSSRIEQNEEPEVSAEISTPIPKQKVSKGRWKGVKYELWKPDS 329

to top

>SOP2_CAEEL (Q965H3) Polycomb protein sop-2 (Suppressor of pal-1 protein 2)|
          Length = 735

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 348 SLRIQSHRTGAPQLRPGQRGRARCTTTRRPGPSS 247
           S R+ + R G P  R   RG AR   +RRP P++
Sbjct: 226 SSRMAARRGGRPGYRGAFRGAARGAPSRRPAPAA 259

to top

>RL10_VITRI (Q9SPB3) 60S ribosomal protein L10 (QM protein homolog)|
          Length = 220

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 369 RAHPLHPSLRIQSHRT--GAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVARG 199
           R HP H  LRI    +  GA +L+ G RG               A+G+P GT ARV+ G
Sbjct: 90  RVHPFHV-LRINKMLSCAGADRLQTGMRG---------------AFGKPQGTCARVSIG 132

to top

>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2|
          Length = 902

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 366 AHPLHPSLRIQSHRTGAPQLRPGQRGRARCTTTRRPGPSSSAW-GRPLGTAARVA 205
           A P   +    + R GAP  RPG       TTT RP  +++   G P G    VA
Sbjct: 182 ARPATAAPAAPAPRPGAPAARPGTTTTRPGTTTARPATTTAQRPGAPAGRGPAVA 236

to top

>RL10_PINTA (O22431) 60S ribosomal protein L10 (Wilm's tumor suppressor|
           homolog)
          Length = 228

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -1

Query: 369 RAHPLHPSLRIQSHR----TGAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVAR 202
           R HP H    ++S++     GA +L+ G RG               A+G+P GT ARVA 
Sbjct: 90  RVHPFHV---LRSNKMLSCAGADRLQTGMRG---------------AFGKPQGTCARVAI 131

Query: 201 G 199
           G
Sbjct: 132 G 132

to top

>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor|
          Length = 3718

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
 Frame = +2

Query: 155  RGSLHHVLLLRPHLSPRATL--AAVPSGRPQ------------AEEEGPGRRVVVHLARP 292
            R  LH  +L+RPH + +  L   A  SGR              A+ EGPG R+ V   + 
Sbjct: 3358 RNRLHLSMLVRPHAASQGLLLSTAPMSGRSPSLVLFLNHGHFVAQTEGPGPRLQVQSRQH 3417

Query: 293  R*PGRSCGAPVRW 331
               G+     VRW
Sbjct: 3418 SRAGQWHRVSVRW 3430

to top

>RL101_ORYSA (P45635) 60S ribosomal protein L10-1 (Putative tumor suppressor|
           SC34)
          Length = 224

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = -1

Query: 369 RAHPLHPSLRIQSHRT--GAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVARG- 199
           R HP+H  LRI    +  GA +L+ G RG               A+G+P GT ARV  G 
Sbjct: 90  RVHPVHV-LRINKMLSCAGADRLQTGMRG---------------AFGKPQGTCARVDIGQ 133

Query: 198 ----LRCGRS 181
               +RC  S
Sbjct: 134 VLLSVRCKES 143

to top

>RL10_TOBAC (Q40592) 60S ribosomal protein L10 (QM protein homolog) (Fragment)|
          Length = 150

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 369 RAHPLHPSLRIQSHRT--GAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVARG 199
           R HP H  LRI    +  GA +L+ G RG               A+G+P G  ARVA G
Sbjct: 19  RVHPFHV-LRINKMLSCAGADRLQTGMRG---------------AFGKPQGVCARVAIG 61

to top

>PKHA6_MOUSE (Q7TQG1) Pleckstrin homology domain-containing family A member 6|
           (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3)
          Length = 1173

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 217 GEGCARTEMRPEQEDVVKRSAWEFSASRRGAMGASTP--PFGD 95
           G GC + E RPE+ +V K +  + +    G   AS P  P+ D
Sbjct: 213 GRGCEKAERRPERPEVKKETLVKANGLPSGPETASEPGSPYPD 255

to top

>SYI_BDEBA (Q6MKX0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
            ligase) (IleRS)
          Length = 1056

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 132  LLDALNSHADLFTTSSCSGRISVLA 206
            LLDALN+H D+ T  + +  +++LA
Sbjct: 1003 LLDALNAHKDMITGETLTKNLNILA 1027

to top

>RL10_SOLME (P93847) 60S ribosomal protein L10 (EQM)|
          Length = 219

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 369 RAHPLHPSLRIQSHRT--GAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVARG 199
           R HP H  LRI    +  GA +L+ G RG               A+G+P G  ARVA G
Sbjct: 90  RVHPFHV-LRINKMLSCAGADRLQTGMRG---------------AFGKPQGVCARVAIG 132

to top

>ERMA_ARTS3 (P09891) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein)
          Length = 340

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 24/66 (36%), Positives = 26/66 (39%)
 Frame = -1

Query: 339 IQSHRTGAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVARGLRCGRSRRTW*RD 160
           +   R GA +    QRGR       RPG      GR  G   R A G R G  R    R 
Sbjct: 280 LDGSRGGAARGPGDQRGRRG-----RPGGGPRPDGRAGGGPRRDAGGRRTGDGRGGRPRP 334

Query: 159 PRGSSA 142
           PRG  A
Sbjct: 335 PRGGQA 340

to top

>TNR21_HUMAN (O75509) Tumor necrosis factor receptor superfamily member 21|
           precursor (TNFR-related death receptor 6) (Death
           receptor 6)
          Length = 655

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
 Frame = +3

Query: 108 GVDAPIAPLLDALNSHA--DLF---------TTSSCSGRISVLAQPSPQSQAADPKPKKK 254
           G +A +A L+ AL  H   D+          TT   + ++++   PSP S +  P P  K
Sbjct: 470 GPEASLAQLISALRQHRRNDVVEKIRGLMEDTTQLETDKLALPMSPSPLSPSPIPSPNAK 529

Query: 255 ARGGGWLYISHDPAD 299
                 L +   P D
Sbjct: 530 LENSALLTVEPSPQD 544

to top

>BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11.1) (NY-REN-26|
           antigen)
          Length = 1271

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 315 PQLRP---GQRGRARCTTTRRPGPSSSAWGRPLGTAARVA 205
           P+ RP   G  G+AR  T RRPG ++S      G  A VA
Sbjct: 113 PEARPDGEGSPGKARPGTARRPGAAASGERDDRGPPASVA 152

to top

>GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains: Protease (EC|
           3.4.23.-)]
          Length = 811

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 315 PQLRPGQRGRARCTTTRRP--GPSSSAWGRPLGTAARVARG 199
           PQ RP  RGR R   T RP  GP++S  GR    + +  RG
Sbjct: 482 PQPRPS-RGRGRGQNTSRPSQGPANSGRGRQRPASGQSNRG 521

to top

>RL10_EUPES (Q9M5M7) 60S ribosomal protein L10|
          Length = 220

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 369 RAHPLHPSLRIQSHRT--GAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVARG 199
           R HP H  LRI    +  GA +L+ G RG               A+G+P G  ARVA G
Sbjct: 90  RVHPFHV-LRINKMLSCAGADRLQTGMRG---------------AFGKPQGVCARVAIG 132

to top

>PKHA6_HUMAN (Q9Y2H5) Pleckstrin homology domain-containing family A member 6|
           (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3)
          Length = 1048

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -3

Query: 268 PPPRAFFFGLGSAAWDCGEGCARTEMRPEQEDVVKRSAWEFSASRRGAMGASTP 107
           P P A   G G      G GC + E RPE+ +V K    + +    G   AS P
Sbjct: 201 PEPEAKTRGEGD-----GRGCEKAERRPERPEVKKEPPVKANGLPAGPEPASEP 249

to top

>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
            (Cav3.1c) (NBR13)
          Length = 2377

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = +3

Query: 201  LAQPSPQSQAADPKPKKKARGGGWLYISHDPADPD 305
            LA   P S AA P PKK       L  S DPAD D
Sbjct: 2344 LASGPPDSMAASPSPKKDVLSLSGL--SSDPADLD 2376

to top

>ANDR_RANCA (Q7T1K4) Androgen receptor (Dihydrotestosterone receptor) (bfAR)|
          Length = 777

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 200 PRATLAAVPSGRPQAEEEGPGRRVV--VHLARPR*PGRSCGAPVRWDWMRREGWRG 361
           PR+ + A P G   AE   P   ++  VH+A P  P  + G        RR GW G
Sbjct: 344 PRSHVPAGPDGEFSAEAWYPATAMLGRVHMAVPMRPRMTHGWTATLGIRRRLGWTG 399

to top

>RL103_ORYSA (Q40649) 60S ribosomal protein L10-3 (QM/R22)|
          Length = 219

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 369 RAHPLHPSLRIQSHRT--GAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVARG 199
           R HP H  LRI    +  GA +L+ G RG               A+G+P GT ARV  G
Sbjct: 90  RVHPFHV-LRINKMLSCAGADRLQTGMRG---------------AFGKPQGTCARVDIG 132

to top

>Y622_SULSO (Q9UX16) UPF0130 protein SSO0622|
          Length = 209

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 132 LLDALNSHADLFTTSSCSGRISVLAQPSP 218
           LL    +  D++T SSCSGRI+++    P
Sbjct: 32  LLAFYRNRNDVYTQSSCSGRITIVDAEMP 60

to top

>WN10A_HUMAN (Q9GZT5) Protein Wnt-10a precursor|
          Length = 417

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +2

Query: 149 LPRGSLHHVLLLRPHLSPRATLAAVPSGRPQAEEEGPGRR 268
           L R   H   L+RPH      L   P+G P      PG R
Sbjct: 289 LLRSRFHRATLIRPHNRNGGQLEPGPAGAPSPAPGAPGPR 328

to top

>RL102_ORYSA (P45636) 60S ribosomal protein L10-2 (Putative tumor suppressor|
           SG12)
          Length = 218

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 369 RAHPLHPSLRIQSHRT--GAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVARG 199
           R HP H  LRI    +  GA +L+ G RG               A+G+P GT ARV  G
Sbjct: 89  RVHPFHV-LRINKMLSCAGADRLQTGMRG---------------AFGKPQGTCARVDIG 131

to top

>RL10_MAIZE (P45633) 60S ribosomal protein L10 (QM protein homolog)|
          Length = 220

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 369 RAHPLHPSLRIQSHRT--GAPQLRPGQRGRARCTTTRRPGPSSSAWGRPLGTAARVARG 199
           R HP H  LRI    +  GA +L+ G RG               A+G+P GT ARV  G
Sbjct: 90  RVHPFHV-LRINKMLSCAGADRLQTGMRG---------------AFGKPQGTCARVDIG 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.124    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,209,573
Number of Sequences: 219361
Number of extensions: 830204
Number of successful extensions: 2409
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2406
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result