ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33h06 |
|---|---|
| Clone Library Name | barley_pub |
>DNE21_RHIME (Q92LA6) Error-prone DNA polymerase 1 (EC 2.7.7.7)| Length = 1116 Score = 32.0 bits (71), Expect = 0.36 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%) Frame = -2 Query: 403 HPYVRKVYGALCXCVTAG----RRGDLVDVELDAVAGEDEHLAV--EGHGHPVPEQLRVL 242 +P R+ +G LC ++AG ++GD D + ++E L + +G G P PE L VL Sbjct: 83 YPKNRRGWGHLCRLLSAGNLRSKKGDCTLHLADLLEWQEELLLIVMQGEGRPEPESLEVL 142
>GATA_CHLTE (Q8KFQ4) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 481 Score = 30.8 bits (68), Expect = 0.80 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = -2 Query: 322 LDAVAGEDEHLAVEGHGHPVPEQLRVLRHLS--GLRI 218 L +AG+DEH A H H VPE + H+S GLRI Sbjct: 224 LGVIAGKDEHDATSSH-HDVPEYDTAMDHVSVDGLRI 259
>CSN12_ASPFU (Q4WJX0) COP9 signalosome complex subunit 12| Length = 455 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -2 Query: 400 PYVRKVYGALCXCVTAGRRGDLVDVELDAVAGEDE 296 P + K++ LC C+ R+GDLV + AGE+E Sbjct: 314 PRLEKLFRPLCDCI---RKGDLVGFDTAMFAGEEE 345
>MATN3_MOUSE (O35701) Matrilin-3 precursor| Length = 481 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 9/42 (21%) Frame = -2 Query: 244 LRHLSGLRILSARLLLEPSFLAPPRRAAS---------PGGS 146 LRHL GL +L LLL PS AP R A + PGGS Sbjct: 7 LRHLPGLLLLLWPLLLLPSLAAPGRLARASVRRLGTRVPGGS 48
>ANNU_SCHAM (P52183) Annulin (Protein-glutamine gamma-glutamyltransferase) (EC| 2.3.2.13) (Transglutaminase) Length = 772 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +2 Query: 8 TKQPDRFEKPSLASLPRHPDPGLLPGIG 91 T++PD KP A +P P PG +P G Sbjct: 32 TRRPDSLPKPPAAVVPSPPSPGDVPDAG 59
>TMPS4_MOUSE (Q8VCA5) Transmembrane protease, serine 4 (EC 3.4.21.-)| (Channel-activating protease 2) (mCAP2) Length = 435 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = -2 Query: 349 RRGDLVDVELDAVAGEDEHLAVEGHGHPVPEQLRVLRHLSGLRILSA 209 +RG L D LD +GEDE V+ +R+ + S L++L A Sbjct: 70 QRGQLCDGHLDCASGEDEEHCVKDFPEKPGVAVRLSKDRSTLQVLDA 116
>LEU3_LACLA (Q02143) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 345 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -2 Query: 334 VDVELDAVAGEDEHLAVEGHGHPVPEQ 254 +D E + A + +A++ HGHP+PE+ Sbjct: 32 IDFEYELEAKDFGGIAIDKHGHPLPEE 58
>RPOB_MYCGE (P47583) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1390 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = +2 Query: 254 LFGNGMPVPFHGEMFVLARDGVE-FHVDKIPSAPGGHAXTKGTIYLSNIR 400 +F MP+ H +F++ +G+E F + +I +PG + TK + LSN R Sbjct: 127 VFLASMPLITHDGVFII--NGIEKFVISQITRSPGIYMLTKSQLKLSNSR 174
>DNAE2_BRAJA (Q89QU8) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1151 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 403 HPYVRKVYGALCXCVTAGRRGD 338 +P R YG LC +T G+RGD Sbjct: 86 YPRDRAAYGRLCQLLTRGKRGD 107
>ATL2G_ARATH (O64763) RING-H2 finger protein ATL2G precursor (RING-H2 finger| protein ATL9) Length = 378 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%) Frame = -3 Query: 330 TW---NSTPSRARTNISPWKGTGIPFPNS 253 TW N TP T +S W+ TGI FP S Sbjct: 227 TWSNSNITPRSKSTGLSSWQITGILFPRS 255
>IER5_HUMAN (Q5VY09) Immediate early response gene 5 protein| Length = 327 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = -3 Query: 141 SDEWVGAGLAGVAGTRFPIPGRRPGSGCLGSEARLG 34 SD G LAG AGT P P ++PG G A G Sbjct: 49 SDPCPGLYLAGPAGTPAPPPQQQPGEPAAGPPAGWG 84
>ADH7_YEAST (P25377) NADP-dependent alcohol dehydrogenase 7 (EC 1.1.1.2)| (NADP-dependent alcohol dehydrogenase VII) (ADHVII) Length = 361 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%) Frame = -2 Query: 334 VDVELDA--VAGEDEHLAVEGHGHPVPEQLRVLRH 236 VDVE++A + G D H+AV G+ PVPE ++L H Sbjct: 36 VDVEIEACGICGSDFHIAV-GNWGPVPEN-QILGH 68
>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2| Length = 953 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 32 KPSLASLPRHPDPGLLPGIGN 94 +PS A +P HP+PG +P N Sbjct: 256 RPSPAMMPTHPNPGQMPSRSN 276
>MOT3_HUMAN (O95907) Monocarboxylate transporter 3 (MCT 3)| Length = 504 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = -2 Query: 310 AGEDEHLAVEGHGHPVPEQLRVLRHLSGLRILSAR-LLLEPSFLAPPRRAA 161 A + E EG P+P +L L +LSAR EP A PR AA Sbjct: 451 ASDTEDAEAEGDSEPLPVVAEEPGNLEALEVLSARGEPTEPEIEARPRLAA 501 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,235,509 Number of Sequences: 219361 Number of extensions: 790119 Number of successful extensions: 2778 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2708 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2778 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
