ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33h04 |
|---|---|
| Clone Library Name | barley_pub |
>NCBP1_HUMAN (Q09161) Nuclear cap-binding protein subunit 1 (80 kDa nuclear| cap-binding protein) (NCBP 80 kDa subunit) (CBP80) Length = 790 Score = 46.6 bits (109), Expect = 3e-05 Identities = 28/108 (25%), Positives = 51/108 (47%) Frame = +1 Query: 103 TLLLRIGDRCPEYGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAEQLPHKIPFFG 282 +L+ ++G++ + ++E VL + + K I L A LP K+ + Sbjct: 33 SLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYT 87 Query: 283 VLIGLINLENEDFAKGIVDATQANLQDALHTENRDRIRILLRFLCGLM 426 L+GL+N N +F V+A L+++L N + L+RFL L+ Sbjct: 88 TLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLV 135
>BINCA_HUMAN (Q96LW7) Bcl10-interacting CARD protein (BinCARD)| Length = 228 Score = 30.4 bits (67), Expect = 2.0 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 156 VGCSPVLGAPVADAKQQRPPASAHG 82 V CSP L +P+A A QRPP+ G Sbjct: 135 VCCSPGLASPLASAPPQRPPSGPEG 159
>CP4B1_RAT (P15129) Cytochrome P450 4B1 (EC 1.14.14.1) (CYPIVB1) (P450-isozyme| 5) (P450 L-2) Length = 510 Score = 29.6 bits (65), Expect = 3.4 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 247 AEQLPHKIP-FFGVLIGLINLENEDFAKGI 333 A+Q PH P +FG +G +N+ D+AK + Sbjct: 73 AQQFPHAHPLWFGQFVGFLNIYEPDYAKAV 102
>SHCBB_XENLA (Q640F2) SHC SH2 domain-binding protein 1 homolog B| Length = 698 Score = 29.6 bits (65), Expect = 3.4 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +1 Query: 139 YGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAE 252 Y TA EH+ Y + R ++ ++D F++ ++C E Sbjct: 189 YDQTALTIEHVRFFYQQIWRPWDEEEEDYFDYFVRCVE 226
>SHCBA_XENLA (Q6GPE9) SHC SH2 domain-binding protein 1 homolog A| Length = 699 Score = 29.6 bits (65), Expect = 3.4 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +1 Query: 139 YGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAE 252 Y TA EH+ Y + R ++ ++D F++ ++C E Sbjct: 189 YNQTALAIEHLRFFYQQIWRPWDEEEEDYFDYFVRCVE 226
>VGLH_BHV1C (P27599) Glycoprotein H precursor| Length = 842 Score = 29.6 bits (65), Expect = 3.4 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -1 Query: 150 CSPVLGAPVADAKQQRPPASAHGGGGGQQRAERDA 46 C+ +L A V A PA+A GG GG+ R RDA Sbjct: 6 CAALLAAAVL-ALAAGAPAAARGGAGGRSREHRDA 39
>HUTH2_FUSNN (Q8RDU4) Histidine ammonia-lyase 2 (EC 4.3.1.3) (Histidase 2)| Length = 511 Score = 29.6 bits (65), Expect = 3.4 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +1 Query: 205 EHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANL 357 E KD I E E L +K+P +G+ G EN ++ ++ Q NL Sbjct: 31 EKQKDKILESRKYVEEALSNKMPIYGINTGFGKFENVPISEEELELLQKNL 81
>PROD_CAEEL (O45228) Probable proline oxidase, mitochondrial precursor (EC| 1.5.3.-) (Proline dehydrogenase) Length = 616 Score = 29.3 bits (64), Expect = 4.4 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +1 Query: 121 GDRCPEYGGT-ADHKEHIEICYNVLSREYEHSKD 219 GD Y T A+HK+ +E CYN L +E++K+ Sbjct: 33 GDTGKPYDCTSAEHKKELEECYNRLDLSFENTKE 66
>E2F5_HUMAN (Q15329) Transcription factor E2F5 (E2F-5)| Length = 346 Score = 29.3 bits (64), Expect = 4.4 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = -1 Query: 153 GCSPVLGAPVADAKQQRPPASAHGGGGGQQRAERDAG 43 G P P A A Q PP G GGG R E+ G Sbjct: 20 GQRPPPQPPQAQAPQPPPPPQLGGAGGGSSRHEKSLG 56
>RAF_MSV36 (P00532) Serine/threonine-protein kinase transforming protein raf| (EC 2.7.11.1) Length = 323 Score = 28.9 bits (63), Expect = 5.8 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = +1 Query: 190 LSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDAL 369 LSR Y++ I + C +++ + P F ++ I L K A + +L A Sbjct: 245 LSRLYKNCPKAIKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSAPEPSLHRAA 304 Query: 370 HTEN 381 HTE+ Sbjct: 305 HTED 308
>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)| Length = 392 Score = 28.9 bits (63), Expect = 5.8 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 5/29 (17%) Frame = -1 Query: 114 KQQRPP-----ASAHGGGGGQQRAERDAG 43 K+Q PP A+A GG GG R ERD G Sbjct: 119 KEQPPPQLLVAAAARGGAGGGGRVERDRG 147
>HDAC7_HUMAN (Q8WUI4) Histone deacetylase 7a (HD7a)| Length = 952 Score = 28.9 bits (63), Expect = 5.8 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = +3 Query: 9 QNPRSEPPPAPTRHLSLLSVVRHRRHEHWLEDAAASHRRQVPRVR 143 Q P EPPP PT LL++ R +R H L A +R V +R Sbjct: 7 QRPPVEPPPEPT----LLALQRPQRLHHHLFLAGLQQQRSVEPMR 47
>NIFA_RHIME (P03028) Nif-specific regulatory protein| Length = 541 Score = 28.9 bits (63), Expect = 5.8 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 9/54 (16%) Frame = -1 Query: 153 GCSPVLGAPVADAKQQRPPASAHGGGGGQQRAERD--------AGWGQ-EAARI 19 G +P+LGAP D PP G ERD AGW Q +AARI Sbjct: 470 GTTPLLGAPANDV----PPKEPGSAGVASNLIERDRLISALEEAGWNQAKAARI 519
>SMC2_SCHPO (P41003) Structural maintenance of chromosome 2 (Chromosome| segregation protein cut14) (Cell untimely torn protein 14) Length = 1172 Score = 28.9 bits (63), Expect = 5.8 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Frame = +1 Query: 223 IFEF----LLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDALHTENRDR 390 IF+F + QC EQL + P F + IN + D G V+ +A L+ + T +RD+ Sbjct: 955 IFDFHSQNMRQCREQLHNLKPRFASMRKAINPKVMDMIDG-VEKKEAKLRSMIKTIHRDK 1013 Query: 391 IRI 399 +I Sbjct: 1014 KKI 1016
>NRX2A_RAT (Q63374) Neurexin-2-alpha precursor (Neurexin II-alpha)| Length = 1715 Score = 28.9 bits (63), Expect = 5.8 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -1 Query: 102 PPASAHGGGGGQQRAERDAGWGQEAARIEGFGSG 1 PPA+ GG +AERD +E GF SG Sbjct: 1468 PPAARRPSSGGPCQAERDDSDCEEPVEASGFASG 1501
>NRX2B_RAT (Q63376) Neurexin-2-beta precursor (Neurexin II-beta)| Length = 662 Score = 28.9 bits (63), Expect = 5.8 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -1 Query: 102 PPASAHGGGGGQQRAERDAGWGQEAARIEGFGSG 1 PPA+ GG +AERD +E GF SG Sbjct: 415 PPAARRPSSGGPCQAERDDSDCEEPVEASGFASG 448
>RAF1_RAT (P11345) RAF proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (Raf-1) (C-RAF) (cRaf) Length = 648 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/64 (25%), Positives = 30/64 (46%) Frame = +1 Query: 190 LSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDAL 369 LSR Y++ + + C +++ + P F ++ I L K A++ +L A Sbjct: 570 LSRLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAA 629 Query: 370 HTEN 381 HTE+ Sbjct: 630 HTED 633
>RAF1_MOUSE (Q99N57) RAF proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (Raf-1) (C-RAF) (cRaf) Length = 648 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/64 (25%), Positives = 30/64 (46%) Frame = +1 Query: 190 LSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDAL 369 LSR Y++ + + C +++ + P F ++ I L K A++ +L A Sbjct: 570 LSRLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAA 629 Query: 370 HTEN 381 HTE+ Sbjct: 630 HTED 633
>SRC64_DROME (P00528) Tyrosine-protein kinase Src64B (EC 2.7.10.2) (Dsrc64)| Length = 552 Score = 28.5 bits (62), Expect = 7.6 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +1 Query: 163 EHIEICYNVLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVL 288 E+IE + + + D+I++ LLQC + +P K P F L Sbjct: 491 ENIERGFRMPKPTNHYFPDNIYQLLLQCWDAVPEKRPTFEFL 532
>PYRG_OCEIH (Q8EM53) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 535 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = +1 Query: 262 HKIPFFGVLIGLINLENEDFAKGIVDATQAN 354 + IPFFG+ +G+ L + +FA+ +V +QA+ Sbjct: 373 NNIPFFGICLGM-QLASVEFARNVVGLSQAH 402
>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)| (Obscurin-MLCK) (Obscurin-RhoGEF) Length = 7968 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%) Frame = -1 Query: 147 SPVLGAPVAD-----AKQQRPPASAHGGGGGQQRAERDAGWGQEA 28 +P GAP+ D +Q P H G +R D+ WGQ A Sbjct: 6988 APSGGAPIRDMGHPQGSKQLPSTGGHPGTAQPERPSPDSPWGQPA 7032
>Y563_LISMF (Q723B6) UPF0210 protein LMOf2365_0563| Length = 451 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 187 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQA 351 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>Y538_LISIN (Q92EC2) UPF0210 protein lin0538| Length = 451 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 187 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQA 351 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>Y534_LISMO (Q8Y9J3) UPF0210 protein lmo0534| Length = 451 Score = 28.5 bits (62), Expect = 7.6 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 187 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQA 351 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>ZN484_HUMAN (Q5JVG2) Zinc finger protein 484| Length = 852 Score = 28.5 bits (62), Expect = 7.6 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -3 Query: 310 FLNLSNLSKLQRKESCEVIVRHTEGETQKYHLWSVHIHEKAHC--NRFRCAPYGRLFPR 140 F+ S+L + QR S E ++E E +++IH+K H F C G+ F R Sbjct: 337 FIQKSDLFRCQRIHSGEKPYEYSECEKNLPQNSNLNIHKKIHTGGKHFECTECGKAFTR 395
>ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor| Length = 1470 Score = 28.1 bits (61), Expect = 9.9 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Frame = -3 Query: 247 HTEGETQKYHLWSVHIHEKAHCNR-----FRCAPYGRLFPRTRGTCRRCEAAASSS 95 H G Q+Y +W + + H N+ R G LFP G R E AAS+S Sbjct: 771 HQNGIIQEYKIWCLGNETRFHINKTVDAAIRSVVIGGLFP---GIQYRVEVAASTS 823
>LOZEN_DROME (Q9W349) Protein lozenge| Length = 826 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = +1 Query: 4 GTKTLDPSRLLPPPGISLCSLLSATAAMSTGWRTLLLRIGDRCPEYGGTADHKEHIEI 177 G + P + PPP + LC L +T ++ L L ++ +Y GTA +H+ I Sbjct: 693 GPQAAPPPQPPPPPPVVLCPQLYST--VNQNQIHLHLHSSEKLEQYLGTATSADHLTI 748
>FUSA_BURCE (P24126) Fusaric acid resistance protein fusA precursor| Length = 530 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -1 Query: 165 LLMVGCSPVLGAPVADAKQQ--RPPASAHGGGGGQQRAERDAGW 40 L+M GC A + D K Q R A+A G + A+RDAGW Sbjct: 19 LIMAGC-----ASMGDNKPQSARIEANALDAGAAIRAADRDAGW 57
>PHOT2_ARATH (P93025) Phototropin-2 (EC 2.7.11.1) (Defective in chloroplast| avoidance protein 1) (Non phototropic hypocotyl 1-like protein 1) (NPH1-like 1) (AtKin7) Length = 915 Score = 28.1 bits (61), Expect = 9.9 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -1 Query: 186 IVTDFDVLLMVGCSPVLGAPVADAKQQR 103 ++ DFD+ M C+P L P A +K++R Sbjct: 717 VLADFDLSFMTTCTPQLIIPAAPSKRRR 744
>MTM1_HUMAN (Q13496) Myotubularin (EC 3.1.3.48)| Length = 603 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 208 HSKDDIFEFLLQCAEQLPHKIPFFGVL 288 HS+ D+FE L + A L H +P F L Sbjct: 128 HSRRDMFEILTRYAFPLAHSLPLFAFL 154
>PURK_AQUAE (O66608) Phosphoribosylaminoimidazole carboxylase ATPase subunit| (EC 4.1.1.21) (AIR carboxylase) (AIRC) Length = 365 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = +1 Query: 115 RIGDRCPEYGGTADHKEHIEICYNVLSREYEHSKDDIFE 231 R+ DRC G + E ++ C ++++ E+EH KD++ E Sbjct: 40 RVADRCFRTGQIS---EFVDSC-DIITYEFEHIKDEVLE 74
>INVSB_XENLA (Q71S21) Inversin-B| Length = 1002 Score = 28.1 bits (61), Expect = 9.9 Identities = 19/52 (36%), Positives = 25/52 (48%) Frame = +1 Query: 37 PPPGISLCSLLSATAAMSTGWRTLLLRIGDRCPEYGGTADHKEHIEICYNVL 192 PP G SL S + A A TG +T LLR+ P+ D + Y+VL Sbjct: 4 PPQGSSLASPIQAAAV--TGDKTTLLRLIASSPQVIDQEDQLGRTPLMYSVL 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,538,266 Number of Sequences: 219361 Number of extensions: 1476090 Number of successful extensions: 6085 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 5669 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6067 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
