ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33h04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110I07, full insert sequence Length = 2992 Score = 365 bits (184), Expect = 8e-98 Identities = 322/368 (87%) Strand = Plus / Plus Query: 71 ccgccaccgccgccatgagcactggctggaggacgctgctgcttcgcatcggcgacaggt 130 ||||| |||||||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct: 46 ccgccgccgccgccatgagcgcgggctggaggacgctgctgctgcggatcggcgacaggt 105 Query: 131 gccccgagtacgggggaacagccgaccataaggagcacatcgaaatctgttacaatgtgc 190 |||| ||||||||||| | |||||||| |||||||||||||||| ||||| ||||| Sbjct: 106 gcccggagtacgggggctccgccgaccacaaggagcacatcgaaacttgttatggtgtgc 165 Query: 191 tttctcgtgaatatgaacactccaaagatgatatttttgagtttctccttcagtgtgccg 250 ||| ||| ||||| |||||||||||||||| || |||||||||||||| || ||||| | Sbjct: 166 tttgtcgagaatacgaacactccaaagatgcaatgtttgagtttctcctccaatgtgcag 225 Query: 251 aacaattacctcacaagattcctttctttggagttttgataggtttgataaatttagaaa 310 | ||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||| Sbjct: 226 atcaattgcctcacaagattcctttctttggagtattgataggtttgataaacttggaaa 285 Query: 311 atgaagactttgccaagggtatcgtggatgcaacacaggctaacctacaggatgctttgc 370 ||||||| ||| |||||||||| || ||| ||||||| || || |||||||||| |||| Sbjct: 286 atgaagatttttccaagggtattgtcgatacaacacatgccaatttacaggatgccttgc 345 Query: 371 atactgaaaaccgtgataggatcaggatattgttacggtttctctgtggcctgatgtgca 430 ||| |||||| ||||| || |||||||||||| | || |||||||||||||||||||||| Sbjct: 346 ataatgaaaatcgtgacagaatcaggatattgctgcgatttctctgtggcctgatgtgca 405 Query: 431 gcaaagtt 438 |||||||| Sbjct: 406 gcaaagtt 413
>gb|AY017415.1| Oryza sativa subsp. japonica nuclear cap-binding protein CBP80 mRNA, complete cds Length = 3009 Score = 359 bits (181), Expect = 5e-96 Identities = 321/368 (87%) Strand = Plus / Plus Query: 71 ccgccaccgccgccatgagcactggctggaggacgctgctgcttcgcatcggcgacaggt 130 ||||| |||||||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct: 62 ccgccgccgccgccatgagcgcgggctggaggacgctgctgctgcggatcggcgacaggt 121 Query: 131 gccccgagtacgggggaacagccgaccataaggagcacatcgaaatctgttacaatgtgc 190 |||| ||||||||||| | | |||||| |||||||||||||||| ||||| ||||| Sbjct: 122 gcccggagtacgggggctccgtcgaccacaaggagcacatcgaaacttgttatggtgtgc 181 Query: 191 tttctcgtgaatatgaacactccaaagatgatatttttgagtttctccttcagtgtgccg 250 ||| ||| ||||| |||||||||||||||| || |||||||||||||| || ||||| | Sbjct: 182 tttgtcgagaatacgaacactccaaagatgcaatgtttgagtttctcctccaatgtgcag 241 Query: 251 aacaattacctcacaagattcctttctttggagttttgataggtttgataaatttagaaa 310 | ||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||| Sbjct: 242 atcaattgcctcacaagattcctttctttggagtattgataggtttgataaacttggaaa 301 Query: 311 atgaagactttgccaagggtatcgtggatgcaacacaggctaacctacaggatgctttgc 370 ||||||| ||| |||||||||| || ||| ||||||| || || |||||||||| |||| Sbjct: 302 atgaagatttttccaagggtattgtcgatacaacacatgccaatttacaggatgccttgc 361 Query: 371 atactgaaaaccgtgataggatcaggatattgttacggtttctctgtggcctgatgtgca 430 ||| |||||| ||||| || |||||||||||| | || |||||||||||||||||||||| Sbjct: 362 ataatgaaaatcgtgacagaatcaggatattgctgcgntttctctgtggcctgatgtgca 421 Query: 431 gcaaagtt 438 |||||||| Sbjct: 422 gcaaagtt 429
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 123 bits (62), Expect = 5e-25 Identities = 92/102 (90%) Strand = Plus / Plus Query: 71 ccgccaccgccgccatgagcactggctggaggacgctgctgcttcgcatcggcgacaggt 130 ||||| |||||||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct: 12950655 ccgccgccgccgccatgagcgcgggctggaggacgctgctgctgcggatcggcgacaggt 12950714 Query: 131 gccccgagtacgggggaacagccgaccataaggagcacatcg 172 |||| ||||||||||| | |||||||| ||||||||||||| Sbjct: 12950715 gcccggagtacgggggctccgccgaccacaaggagcacatcg 12950756 Score = 69.9 bits (35), Expect = 7e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 230 agtttctccttcagtgtgccgaacaattacctcacaagattcctttctttggagt 284 |||||||||| || ||||| || ||||| |||||||||||||||||||||||||| Sbjct: 12952294 agtttctcctccaatgtgcagatcaattgcctcacaagattcctttctttggagt 12952348 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 358 caggatgctttgcatactgaaaaccgtgataggatcaggatattgttacggtttctctgt 417 |||||||| ||||||| |||||| ||||| || |||||||||||| | || ||||||||| Sbjct: 12953272 caggatgccttgcataatgaaaatcgtgacagaatcaggatattgctgcgatttctctgt 12953331 Query: 418 ggcctg 423 |||||| Sbjct: 12953332 ggcctg 12953337 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 288 gataggtttgataaatttagaaaatgaagactttgccaagggtatcgtggatgcaacaca 347 ||||||||||||||| || ||||||||||| ||| |||||||||| || ||| ||||||| Sbjct: 12953057 gataggtttgataaacttggaaaatgaagatttttccaagggtattgtcgatacaacaca 12953116 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Plus Query: 186 tgtgctttctcgtgaatatgaacactccaaagatg 220 |||||||| ||| ||||| |||||||||||||||| Sbjct: 12951656 tgtgctttgtcgagaatacgaacactccaaagatg 12951690
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 123 bits (62), Expect = 5e-25 Identities = 92/102 (90%) Strand = Plus / Plus Query: 71 ccgccaccgccgccatgagcactggctggaggacgctgctgcttcgcatcggcgacaggt 130 ||||| |||||||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct: 12947430 ccgccgccgccgccatgagcgcgggctggaggacgctgctgctgcggatcggcgacaggt 12947489 Query: 131 gccccgagtacgggggaacagccgaccataaggagcacatcg 172 |||| ||||||||||| | |||||||| ||||||||||||| Sbjct: 12947490 gcccggagtacgggggctccgccgaccacaaggagcacatcg 12947531 Score = 69.9 bits (35), Expect = 7e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 230 agtttctccttcagtgtgccgaacaattacctcacaagattcctttctttggagt 284 |||||||||| || ||||| || ||||| |||||||||||||||||||||||||| Sbjct: 12949069 agtttctcctccaatgtgcagatcaattgcctcacaagattcctttctttggagt 12949123 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 358 caggatgctttgcatactgaaaaccgtgataggatcaggatattgttacggtttctctgt 417 |||||||| ||||||| |||||| ||||| || |||||||||||| | || ||||||||| Sbjct: 12950047 caggatgccttgcataatgaaaatcgtgacagaatcaggatattgctgcgatttctctgt 12950106 Query: 418 ggcctg 423 |||||| Sbjct: 12950107 ggcctg 12950112 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 288 gataggtttgataaatttagaaaatgaagactttgccaagggtatcgtggatgcaacaca 347 ||||||||||||||| || ||||||||||| ||| |||||||||| || ||| ||||||| Sbjct: 12949832 gataggtttgataaacttggaaaatgaagatttttccaagggtattgtcgatacaacaca 12949891 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Plus Query: 186 tgtgctttctcgtgaatatgaacactccaaagatg 220 |||||||| ||| ||||| |||||||||||||||| Sbjct: 12948431 tgtgctttgtcgagaatacgaacactccaaagatg 12948465
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 123 bits (62), Expect = 5e-25 Identities = 92/102 (90%) Strand = Plus / Plus Query: 71 ccgccaccgccgccatgagcactggctggaggacgctgctgcttcgcatcggcgacaggt 130 ||||| |||||||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct: 28353 ccgccgccgccgccatgagcgcgggctggaggacgctgctgctgcggatcggcgacaggt 28412 Query: 131 gccccgagtacgggggaacagccgaccataaggagcacatcg 172 |||| ||||||||||| | |||||||| ||||||||||||| Sbjct: 28413 gcccggagtacgggggctccgccgaccacaaggagcacatcg 28454 Score = 69.9 bits (35), Expect = 7e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 230 agtttctccttcagtgtgccgaacaattacctcacaagattcctttctttggagt 284 |||||||||| || ||||| || ||||| |||||||||||||||||||||||||| Sbjct: 29992 agtttctcctccaatgtgcagatcaattgcctcacaagattcctttctttggagt 30046 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 358 caggatgctttgcatactgaaaaccgtgataggatcaggatattgttacggtttctctgt 417 |||||||| ||||||| |||||| ||||| || |||||||||||| | || ||||||||| Sbjct: 30970 caggatgccttgcataatgaaaatcgtgacagaatcaggatattgctgcgatttctctgt 31029 Query: 418 ggcctg 423 |||||| Sbjct: 31030 ggcctg 31035 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 288 gataggtttgataaatttagaaaatgaagactttgccaagggtatcgtggatgcaacaca 347 ||||||||||||||| || ||||||||||| ||| |||||||||| || ||| ||||||| Sbjct: 30755 gataggtttgataaacttggaaaatgaagatttttccaagggtattgtcgatacaacaca 30814 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Plus Query: 186 tgtgctttctcgtgaatatgaacactccaaagatg 220 |||||||| ||| ||||| |||||||||||||||| Sbjct: 29354 tgtgctttgtcgagaatacgaacactccaaagatg 29388
>gb|AC149131.3| Medicago truncatula chromosome 7 BAC clone mth2-19e15, complete sequence Length = 122492 Score = 46.1 bits (23), Expect = 0.095 Identities = 35/39 (89%) Strand = Plus / Plus Query: 244 tgtgccgaacaattacctcacaagattcctttctttgga 282 ||||| || ||||| ||||||||||||||||||| |||| Sbjct: 37283 tgtgctgagcaattgcctcacaagattcctttctatgga 37321
>gb|AC140216.3| Mus musculus BAC clone RP23-276B20 from chromosome 5, complete sequence Length = 194560 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 ccgcctcctgcccccacccggc 48 |||||||||||||||||||||| Sbjct: 61800 ccgcctcctgcccccacccggc 61821
>ref|XM_980134.1| PREDICTED: Mus musculus similar to cytochrome P450, family 2, subfamily W, polypeptide 1 (LOC545817), mRNA Length = 1512 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 ccgcctcctgcccccacccggc 48 |||||||||||||||||||||| Sbjct: 1401 ccgcctcctgcccccacccggc 1422
>ref|XM_620268.3| PREDICTED: Mus musculus similar to cytochrome P450, family 2, subfamily W, polypeptide 1 (LOC545817), mRNA Length = 1512 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 ccgcctcctgcccccacccggc 48 |||||||||||||||||||||| Sbjct: 1401 ccgcctcctgcccccacccggc 1422
>ref|XR_005014.1| PREDICTED: Mus musculus similar to cytochrome P450, family 2, subfamily W, polypeptide 1 (LOC545817), mRNA Length = 1345 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 ccgcctcctgcccccacccggc 48 |||||||||||||||||||||| Sbjct: 1234 ccgcctcctgcccccacccggc 1255
>emb|AL589679.14| Mouse DNA sequence from clone RP23-189A16 on chromosome 13 Contains the 3' end of the Csh1 gene for chorionic somatomammotropin hormone 1, two genes for novel proteins similar to chorionic somatomammotropin hormone 1 (Csh1), the Prlpi gene for prolactin-like protein I (Prlpj, decidualin), the Csh2 gene for chorionic somatomammotropin hormone 2, the gene for protein 1600016E11RIK similar to prolactin and a novel gene (4930511O05Rik), complete sequence Length = 207737 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 217 gatgatatttttgagtttctcc 238 |||||||||||||||||||||| Sbjct: 140191 gatgatatttttgagtttctcc 140170
>gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete sequence Length = 102585 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Plus Query: 230 agtttctccttcagtgtgccgaacaattacctcacaagattccttt 275 ||||||| || || ||||| |||||||| ||||| ||||||||||| Sbjct: 27805 agtttctactacaatgtgctgaacaattgcctcataagattccttt 27850
>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence Length = 222180 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 27 ccgcctcctgcccccacccggc 48 |||||||||||||||||||||| Sbjct: 30258 ccgcctcctgcccccacccggc 30237
>gb|AC164102.2| Mus musculus BAC clone RP23-7E23 from chromosome 13, complete sequence Length = 234552 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 cctacaggatgctttgcatac 374 ||||||||||||||||||||| Sbjct: 12517 cctacaggatgctttgcatac 12497
>dbj|AB226980.1| Aspergillus oryzae cDNA, contig sequence: AoEST3842 Length = 485 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 tgaacactccaaagatgatat 224 ||||||||||||||||||||| Sbjct: 120 tgaacactccaaagatgatat 100
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 tgaacactccaaagatgatat 224 ||||||||||||||||||||| Sbjct: 141271 tgaacactccaaagatgatat 141291
>gb|AC006233.4| Arabidopsis thaliana chromosome 2 clone F12K2 map B68, complete sequence Length = 88383 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 tttgataaatttagaaaatga 314 ||||||||||||||||||||| Sbjct: 71384 tttgataaatttagaaaatga 71364
>gb|AC022542.5| Homo sapiens chromosome 10 clone RP11-537G20, complete sequence Length = 185857 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 atttttgagtttctccttcag 243 ||||||||||||||||||||| Sbjct: 142577 atttttgagtttctccttcag 142597
>gb|AC005384.2|AC005384 b326h7, complete sequence Length = 178292 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 atttttgagtttctccttcag 243 ||||||||||||||||||||| Sbjct: 106216 atttttgagtttctccttcag 106196
>gb|AC134608.3| Mus musculus BAC clone RP23-68H13 from 13, complete sequence Length = 253539 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 cctacaggatgctttgcatac 374 ||||||||||||||||||||| Sbjct: 186964 cctacaggatgctttgcatac 186944
>emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chromosome 4, complete sequence Length = 182774 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 aaatctgttacaatgtgcttt 193 ||||||||||||||||||||| Sbjct: 121763 aaatctgttacaatgtgcttt 121743
>gb|AC153357.4| Mus musculus BAC clone RP24-124N8 from chromosome 10, complete sequence Length = 189789 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 aagattcctttctttggagttttg 288 ||||||||| |||||||||||||| Sbjct: 93121 aagattcctgtctttggagttttg 93098
>ref|NM_126934.3| Arabidopsis thaliana ABH1 (ABA HYPERSENSITIVE 1) AT2G13540 (ABH1) mRNA, complete cds Length = 2860 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 244 tgtgccgaacaattacctcacaagattccttt 275 ||||| |||||||| ||||| ||||||||||| Sbjct: 326 tgtgctgaacaattgcctcataagattccttt 357
>gb|AE014835.1| Plasmodium falciparum 3D7 chromosome 10 section 7 of 7 of the complete sequence Length = 180450 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 ataaatttagaaaatgaagacttt 321 ||||| |||||||||||||||||| Sbjct: 83253 ataaaattagaaaatgaagacttt 83230
>gb|AE001431.2| Plasmodium falciparum 3D7 chromosome 2 section 68 of 73 of the complete sequence Length = 11929 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 ataaatttagaaaatgaagacttt 321 ||||| |||||||||||||||||| Sbjct: 2967 ataaaattagaaaatgaagacttt 2944
>gb|AC003676.1| Homo sapiens chromosome 2, P1 clone 777H5 (LBNL H27), complete sequence Length = 86894 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 289 ataggtttgataaatttagaaaat 312 |||||||| ||||||||||||||| Sbjct: 16327 ataggtttaataaatttagaaaat 16350
>gb|AC133609.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0002C14, complete sequence Length = 154029 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ccgccaccgccgccatgagc 90 |||||||||||||||||||| Sbjct: 152328 ccgccaccgccgccatgagc 152347
>gb|AC116595.4| Mus musculus BAC clone RP24-127G9 from chromosome 18, complete sequence Length = 158788 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 ttcctttctttggagttttg 288 |||||||||||||||||||| Sbjct: 131839 ttcctttctttggagttttg 131858
>gb|AC141927.3| Mus musculus BAC clone RP23-237F16 from chromosome 6, complete sequence Length = 186452 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tgaacactccaaagatgata 223 |||||||||||||||||||| Sbjct: 52440 tgaacactccaaagatgata 52459
>ref|XM_452943.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C16621g predicted mRNA Length = 921 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 catgagcactggctggagga 103 |||||||||||||||||||| Sbjct: 802 catgagcactggctggagga 783
>gb|AC004925.1| Homo sapiens PAC clone RP5-907C10 from 7, complete sequence Length = 154959 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ggcatctctctctgctctct 65 |||||||||||||||||||| Sbjct: 113368 ggcatctctctctgctctct 113349
>gb|AY095373.1| Homo sapiens truncated CD36 antigen (collagen type I receptor, thrombospondin receptor) (CD36) gene, complete cds Length = 30180 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 gaaaatgaagactttgccaa 326 |||||||||||||||||||| Sbjct: 18996 gaaaatgaagactttgccaa 19015
>gb|AC134335.2| Mus musculus BAC clone RP24-150I18 from chromosome 15, complete sequence Length = 166926 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 tgaatatgaacactccaaagatga 221 |||| ||||||||||||||||||| Sbjct: 124981 tgaaaatgaacactccaaagatga 125004
>gb|AC076968.38| Homo sapiens 12 BAC RP11-686F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 203038 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 atttagaaaatgaagacttt 321 |||||||||||||||||||| Sbjct: 171514 atttagaaaatgaagacttt 171495
>gb|AC121903.2| Mus musculus BAC clone RP24-174G24 from 18, complete sequence Length = 172114 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 ttcctttctttggagttttg 288 |||||||||||||||||||| Sbjct: 42143 ttcctttctttggagttttg 42162
>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0076M06, complete sequence Length = 133581 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ccgccaccgccgccatgagc 90 |||||||||||||||||||| Sbjct: 50088 ccgccaccgccgccatgagc 50107
>ref|XM_960912.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0065c) partial mRNA Length = 849 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 ataaatttagaaaatgaagacttt 321 ||||| |||||||||||||||||| Sbjct: 314 ataaaattagaaaatgaagacttt 291
>emb|AL021579.1|HS598F2 Human DNA sequence from clone RP4-598F2 on chromosome 1q23.1-24.3 Contains part of the gene for HBxAg transactivated protein 2 (XTP2), complete sequence Length = 99886 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aatttagaaaatgaagactt 320 |||||||||||||||||||| Sbjct: 87912 aatttagaaaatgaagactt 87931
>emb|AL627250.8| Human DNA sequence from clone RP13-222H17 on chromosome X Contains a novel pseudogene, complete sequence Length = 177796 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aggtttgataaatttagaaa 310 |||||||||||||||||||| Sbjct: 121520 aggtttgataaatttagaaa 121501
>emb|AL078613.10|HSA354I12 Human DNA sequence from clone RP11-354I12 on chromosome 22 Contains an STS and GSSs, complete sequence Length = 60837 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tctctctctgctctctgttg 69 |||||||||||||||||||| Sbjct: 6826 tctctctctgctctctgttg 6845
>ref|XM_965857.1| PREDICTED: Tribolium castaneum similar to CG5836-PA (LOC659564), mRNA Length = 1850 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 gttgtccgccaccgccgcca 85 |||||||||||||||||||| Sbjct: 1658 gttgtccgccaccgccgcca 1677
>gb|BT000650.1| Arabidopsis thaliana At2g13540/T10F5.8 mRNA, complete cds Length = 2547 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 244 tgtgccgaacaattacctcacaagattccttt 275 ||||| |||||||| ||||| ||||||||||| Sbjct: 157 tgtgctgaacaattgcctcataagattccttt 188
>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5 Length = 349418 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 ataaatttagaaaatgaagacttt 321 ||||| |||||||||||||||||| Sbjct: 49406 ataaaattagaaaatgaagacttt 49429
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 catgagcactggctggagga 103 |||||||||||||||||||| Sbjct: 1457204 catgagcactggctggagga 1457185
>emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2 Length = 384550 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 ataaatttagaaaatgaagacttt 321 ||||| |||||||||||||||||| Sbjct: 10287 ataaaattagaaaatgaagacttt 10310
>emb|AL034559.4|PFMAL3P7 Plasmodium falciparum MAL3P7, complete sequence Length = 253305 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 ataaatttagaaaatgaagacttt 321 ||||| |||||||||||||||||| Sbjct: 196153 ataaaattagaaaatgaagacttt 196130
>dbj|AK057690.1| Homo sapiens cDNA FLJ33128 fis, clone TRACH2001596, weakly similar to H.sapiens of CD36 gene Length = 3224 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 gaaaatgaagactttgccaa 326 |||||||||||||||||||| Sbjct: 2987 gaaaatgaagactttgccaa 3006
>gb|AF268377.1| Arabidopsis thaliana nuclear cap-binding protein CBP80 mRNA, complete cds Length = 2834 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 244 tgtgccgaacaattacctcacaagattccttt 275 ||||| |||||||| ||||| ||||||||||| Sbjct: 326 tgtgctgaacaattgcctcataagattccttt 357
>gb|DQ401069.1| Xenopus tropicalis leptin receptor (OB-Rb) gene, complete cds Length = 4391 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aatctgttacaatgtgcttt 193 |||||||||||||||||||| Sbjct: 1292 aatctgttacaatgtgcttt 1273
>gb|AY064960.1| Arabidopsis thaliana At2g13540/T10F5.8 mRNA, complete cds Length = 2735 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 244 tgtgccgaacaattacctcacaagattccttt 275 ||||| |||||||| ||||| ||||||||||| Sbjct: 227 tgtgctgaacaattgcctcataagattccttt 258
>gb|AC092015.2| Homo sapiens chromosome 1 clone RP11-358L14, complete sequence Length = 161815 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tctctctctgctctctgttg 69 |||||||||||||||||||| Sbjct: 51869 tctctctctgctctctgttg 51888
>gb|AC073850.4| Homo sapiens BAC clone RP11-697H17 from 7, complete sequence Length = 183846 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 gaaaatgaagactttgccaa 326 |||||||||||||||||||| Sbjct: 23950 gaaaatgaagactttgccaa 23969
>gb|AF272891.1|AF272891 Arabidopsis thaliana mRNA cap binding protein mRNA, complete cds Length = 2716 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 244 tgtgccgaacaattacctcacaagattccttt 275 ||||| |||||||| ||||| ||||||||||| Sbjct: 193 tgtgctgaacaattgcctcataagattccttt 224
>gb|AC026743.4|AC026743 Homo sapiens chromosome 5 clone RP11-121L11, complete sequence Length = 171260 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 tgcccccacccggcatctctctct 58 |||||||||||||| ||||||||| Sbjct: 54952 tgcccccacccggcctctctctct 54929
>gb|AC161938.2| Mus musculus 6 BAC RP24-162E3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163330 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tgaacactccaaagatgata 223 |||||||||||||||||||| Sbjct: 64331 tgaacactccaaagatgata 64312
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ccgccaccgccgccatgagc 90 |||||||||||||||||||| Sbjct: 26248439 ccgccaccgccgccatgagc 26248458
>gb|AC005798.10|AC005798 Homo sapiens chromosome 4 clone RP11-442P12, complete sequence Length = 206631 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 atctctctctgctctctgtt 68 |||||||||||||||||||| Sbjct: 56232 atctctctctgctctctgtt 56251
>gb|AC079895.7| Homo sapiens BAC clone RP11-749M12 from 2, complete sequence Length = 149309 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 ataggtttgataaatttagaaaat 312 |||||||| ||||||||||||||| Sbjct: 90584 ataggtttaataaatttagaaaat 90561
>gb|AC147097.3| Pan troglodytes BAC clone RP43-51D4 from chromosome 7, complete sequence Length = 192069 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 gaaaatgaagactttgccaa 326 |||||||||||||||||||| Sbjct: 52188 gaaaatgaagactttgccaa 52207
>gb|AC023423.5|AC023423 Homo sapiens BAC clone RP11-430C23 from Y, complete sequence Length = 88016 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aggtttgataaatttagaaa 310 |||||||||||||||||||| Sbjct: 1978 aggtttgataaatttagaaa 1959
>gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete sequence Length = 171949 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 atttagaaaatgaagacttt 321 |||||||||||||||||||| Sbjct: 9233 atttagaaaatgaagacttt 9214
>dbj|AK108290.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D12, full insert sequence Length = 869 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ccgccaccgccgccatgagc 90 |||||||||||||||||||| Sbjct: 305 ccgccaccgccgccatgagc 324
>gb|AC140381.3| Mus musculus BAC clone RP23-176M4 from 10, complete sequence Length = 223470 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 aagattcctttctttggagttttg 288 ||||||||| |||||||||||||| Sbjct: 30346 aagattcctgtctttggagttttg 30323
>gb|AC113278.15| Mus musculus chromosome 3, clone RP23-387I7, complete sequence Length = 180681 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 tgaatatgaacactccaaagatga 221 |||| ||||||||||||||||||| Sbjct: 100205 tgaaaatgaacactccaaagatga 100228
>dbj|AP003305.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-667E8, complete sequence Length = 134764 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gtttgataaatttagaaaat 312 |||||||||||||||||||| Sbjct: 123711 gtttgataaatttagaaaat 123692
>gb|DQ331932.1| Synthetic construct Saccharomyces cerevisiae clone FLH147894.01X TUS1 gene, complete sequence Length = 3924 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 atatttttgagtttctcctt 240 |||||||||||||||||||| Sbjct: 2274 atatttttgagtttctcctt 2255
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ccgccaccgccgccatgagc 90 |||||||||||||||||||| Sbjct: 26562697 ccgccaccgccgccatgagc 26562716
>gb|U20939.1|YSCL9576 Saccharomyces cerevisiae chromosome XII cosmid 9576 Length = 35805 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 atatttttgagtttctcctt 240 |||||||||||||||||||| Sbjct: 20617 atatttttgagtttctcctt 20598
>gb|AC157946.2| Mus musculus BAC clone RP23-281H11 from chromosome 15, complete sequence Length = 190752 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 tgaatatgaacactccaaagatga 221 |||| ||||||||||||||||||| Sbjct: 190486 tgaaaatgaacactccaaagatga 190509
>emb|AL606933.4| Mouse DNA sequence from clone RP23-168M5 on chromosome 4, complete sequence Length = 197552 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 cacccggcatctctctctgctctc 64 ||||| |||||||||||||||||| Sbjct: 162333 cacccagcatctctctctgctctc 162310 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,675,370 Number of Sequences: 3902068 Number of extensions: 4675370 Number of successful extensions: 141404 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141055 Number of HSP's gapped (non-prelim): 349 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
