ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33h02 |
|---|---|
| Clone Library Name | barley_pub |
>ITB6_CAVPO (P18563) Integrin beta-6 (Fragment)| Length = 577 Score = 30.8 bits (68), Expect = 1.1 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = -2 Query: 49 GLVCGEDGECVCGRC 5 GL+CG++G+C CG C Sbjct: 408 GLLCGDNGDCECGEC 422
>ITB6_MOUSE (Q9Z0T9) Integrin beta-6 precursor| Length = 787 Score = 30.4 bits (67), Expect = 1.4 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = -2 Query: 49 GLVCGEDGECVCGRC 5 GL+CG++G+C CG C Sbjct: 549 GLLCGDNGDCDCGEC 563 Score = 27.7 bits (60), Expect = 8.9 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = -2 Query: 49 GLVCGEDGECVCGRC 5 G++C G+CVCG+C Sbjct: 588 GVLCSGRGDCVCGKC 602
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 30.4 bits (67), Expect = 1.4 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%) Frame = +2 Query: 2 PAAPAHTLPILPANQPNQRV-----NPGRLVRAGA 91 P A H +P+LP QP V N G+L+R GA Sbjct: 752 PTALFHPMPVLPKAQPGPEVRIYDSNTGKLIRTGA 786
>PAT3_CAEEL (Q27874) Integrin beta pat-3 precursor| Length = 809 Score = 29.6 bits (65), Expect = 2.3 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -2 Query: 49 GLVCGEDGECVCGRC 5 G +C GEC+CGRC Sbjct: 614 GKICNGKGECICGRC 628
>ITB6_HUMAN (P18564) Integrin beta-6 precursor| Length = 788 Score = 28.9 bits (63), Expect = 4.0 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -2 Query: 49 GLVCGEDGECVCGRC 5 GL+CG +G+C CG C Sbjct: 549 GLLCGGNGDCDCGEC 563 Score = 27.7 bits (60), Expect = 8.9 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = -2 Query: 49 GLVCGEDGECVCGRC 5 G++C G+CVCG+C Sbjct: 588 GVLCSGRGDCVCGKC 602
>ITB1_RAT (P49134) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 799 Score = 28.5 bits (62), Expect = 5.2 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = -2 Query: 43 VCGEDGECVCGRC 5 +C +GECVCG+C Sbjct: 525 ICSNNGECVCGQC 537
>ITB1_MOUSE (P09055) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 798 Score = 28.5 bits (62), Expect = 5.2 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = -2 Query: 43 VCGEDGECVCGRC 5 +C +GECVCG+C Sbjct: 524 ICSNNGECVCGQC 536
>ITB1_HUMAN (P05556) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 798 Score = 28.5 bits (62), Expect = 5.2 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = -2 Query: 43 VCGEDGECVCGRC 5 +C +GECVCG+C Sbjct: 524 ICSNNGECVCGQC 536
>ITB1_FELCA (P53713) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 798 Score = 28.5 bits (62), Expect = 5.2 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = -2 Query: 43 VCGEDGECVCGRC 5 +C +GECVCG+C Sbjct: 524 ICSNNGECVCGQC 536
>ITB1_BOVIN (P53712) Integrin beta-1 (Fibronectin receptor beta subunit)| (Integrin VLA-4 beta subunit) (CD29 antigen) (Fragment) Length = 773 Score = 28.5 bits (62), Expect = 5.2 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = -2 Query: 43 VCGEDGECVCGRC 5 +C +GECVCG+C Sbjct: 501 ICSNNGECVCGQC 513
>ITB1_CHICK (P07228) Integrin beta-1 precursor (CSAT antigen) (JG22 antigen)| (RGD-receptor) Length = 803 Score = 28.1 bits (61), Expect = 6.8 Identities = 7/13 (53%), Positives = 11/13 (84%) Frame = -2 Query: 43 VCGEDGECVCGRC 5 +C +GEC+CG+C Sbjct: 529 ICSNNGECICGQC 541
>SOX14_DROME (P40656) Putative transcription factor SOX-14| Length = 472 Score = 28.1 bits (61), Expect = 6.8 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 12 PHTHSPSSPQTNPTSASIPAGSCAPG 89 PHT P SP +P S+ PA + PG Sbjct: 50 PHTLPPFSPSPSPASSPSPAPAQTPG 75
>ITB5_HUMAN (P18084) Integrin beta-5 precursor| Length = 799 Score = 27.7 bits (60), Expect = 8.9 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = -2 Query: 49 GLVCGEDGECVCGRC 5 G +C E G C+CG+C Sbjct: 599 GQICSERGHCLCGQC 613
>ITB8_HUMAN (P26012) Integrin beta-8 precursor| Length = 769 Score = 27.7 bits (60), Expect = 8.9 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = -2 Query: 49 GLVCGEDGECVCGRC 5 G VC G CVCGRC Sbjct: 598 GQVCSGRGTCVCGRC 612
>ITB5_MOUSE (O70309) Integrin beta-5 precursor| Length = 798 Score = 27.7 bits (60), Expect = 8.9 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = -2 Query: 49 GLVCGEDGECVCGRC 5 G +C + G CVCG+C Sbjct: 599 GQICSDRGRCVCGQC 613
>ITB8_RABIT (P26013) Integrin beta-8 precursor| Length = 768 Score = 27.7 bits (60), Expect = 8.9 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = -2 Query: 49 GLVCGEDGECVCGRC 5 G VC G CVCGRC Sbjct: 598 GQVCSGRGTCVCGRC 612
>ITB5_PAPCY (Q07441) Integrin beta-5 (Fragment)| Length = 655 Score = 27.7 bits (60), Expect = 8.9 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = -2 Query: 49 GLVCGEDGECVCGRC 5 G +C E G C+CG+C Sbjct: 455 GQICSERGHCLCGQC 469 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,271,017 Number of Sequences: 219361 Number of extensions: 331024 Number of successful extensions: 2423 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2013 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2422 length of database: 80,573,946 effective HSP length: 30 effective length of database: 73,993,116 effective search space used: 1775834784 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
