>RPA1_TRYBB (P16355) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)|
          Length = 1744

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 293  IHEEDPEKDGIGGGDTRNPQRLAGSRRTGAREQC*RISADPEVAD 159
            +H +  +  GI G DT  PQR  GS  +G  +     ++D E AD
Sbjct: 1411 LHSDGTDTRGIAGSDTGGPQRRRGSVESGRGDD----ASDSEAAD 1451

>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
 Frame = +3

Query: 21  PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVV--GHLRIC-* 182
           P SPAP P   L+A   +   S    N R  +  +   GG+    ADPV        C  
Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158

Query: 183 NPSALLPCSCSPTPGQPL-RIASISPSDS 266
           +P    P S SP  G P  R+ SIS S S
Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187

>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
 Frame = +3

Query: 21  PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVV--GHLRIC-* 182
           P SPAP P   L+A   +   S    N R  +  +   GG+    ADPV        C  
Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158

Query: 183 NPSALLPCSCSPTPGQPL-RIASISPSDS 266
           +P    P S SP  G P  R+ SIS S S
Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187

>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
 Frame = +3

Query: 21  PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVV--GHLRIC-* 182
           P SPAP P   L+A   +   S    N R  +  +   GG+    ADPV        C  
Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158

Query: 183 NPSALLPCSCSPTPGQPL-RIASISPSDS 266
           +P    P S SP  G P  R+ SIS S S
Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187

>NEB1_HUMAN (Q9ULJ8) Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin|
           binding protein I) (Protein phosphatase 1 regulatory
           subunit 9A)
          Length = 1098

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 83  RRKPERSIHEGGDRRRGAAPACRSGGRPPQD 175
           R+  ERS+HE G   R +    ++GG  PQD
Sbjct: 143 RKMFERSVHESGQNNRYSPKKEKAGGSEPQD 173

>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1459

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 77  LPRRKPERSIHEGGDRRRGAAPACRSGGRPPQDLLKSFSIAPLLLFSDSRP 229
           LP  KP  +I+  G+RR   +       RPP  L  S  + PLLL +   P
Sbjct: 504 LPSSKPRYAINHSGERRPSISQ------RPPTRLTPSVFVPPLLLGNIENP 548

>M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kinase 1 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1)
           (MEKK 1)
          Length = 1493

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/61 (34%), Positives = 25/61 (40%)
 Frame = -2

Query: 206 AREQC*RISADPEVADHRICTPEQLPAGGPRPHGSISRVFSSARTLGES*EG*ARVGGG* 27
           A   C   S  PE AD         PA GP P G+ SR  S +  L  + +  AR   G 
Sbjct: 87  ASPPCPSTSPSPEPADAAAGASRFQPAAGPPPPGAASRCGSHSAELAAARDSGARSPAGA 146

Query: 26  E 24
           E
Sbjct: 147 E 147

>SYTL2_HUMAN (Q9HCH5) Synaptotagmin-like protein 2 (Exophilin-4)|
          Length = 895

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 386 QNGFAINNSGKVAFNRTFREKILHQIPACDLIHEEDPEKDGIGGGDTRNPQR 231
           +N   IN     +   T  E +L + PA +L H  +PE   + GG +R+ Q+
Sbjct: 420 ENSPTINEPKDKSSELTRLESVLPRSPADELSHCVEPEPSQVPGGSSRDRQQ 471

>OTRA_STRRM (Q55002) Oxytetracycline resistance protein|
          Length = 663

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 292 FTRRIPKRTESEGEILAIRRGW-PGVGEQEQGSNAEG 185
           F +R+P  T+ EG  LA  RG+ P VG+       EG
Sbjct: 610 FNQRVPGLTQGEGVFLAEHRGYRPAVGQPPVRPRPEG 646

>M3K1_RAT (Q62925) Mitogen-activated protein kinase kinase kinase 1 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1)
           (MEKK 1)
          Length = 1493

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/61 (34%), Positives = 25/61 (40%)
 Frame = -2

Query: 206 AREQC*RISADPEVADHRICTPEQLPAGGPRPHGSISRVFSSARTLGES*EG*ARVGGG* 27
           A   C   S  PE AD         PA GP P G+ SR  S +  L  + +  AR   G 
Sbjct: 82  ASPPCPSTSPSPEPADAAAGASGFQPAAGPPPPGAASRCGSHSAELAAARDSGARSPAGA 141

Query: 26  E 24
           E
Sbjct: 142 E 142

>AGUA_ERWCT (Q6CZ80) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine|
           iminohydrolase)
          Length = 368

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 332 REKILHQIPACDLIHEEDPEKDGIGGGDTRNPQRLAGSRRTGA 204
           RE  + ++PA   +H    E  G+  GD    +RLAGSR  G+
Sbjct: 265 RELKIWKLPAPGPLHATKEEAQGVDSGDA--VERLAGSRLAGS 305

>KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H member 2|
            (Voltage-gated potassium channel subunit Kv11.1)
            (Ether-a-go-go related gene potassium channel 1) (H-ERG)
            (Erg1) (Ether-a-go-go related protein 1) (Eag-related
            protein 1) (eag homo
          Length = 1159

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 322  FSTRFQHAT*FTRRIPKRTESEGEILAIRRGWPGVGEQEQG 200
            FS + +    F RR  K TE  GE+ A+  G  G G   +G
Sbjct: 881  FSRQRKRKLSFRRRTDKDTEQPGEVSALGPGRAGAGPSSRG 921

>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3|
           (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II)
           (eIF4GII)
          Length = 1579

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 21  PLSPAPHP-RLSLSALA*GSCRGENPRDRSMRAGTAGGELLRRADPVVGHLRIC*NPSAL 197
           P S APH  +L  S +      G   +  S +  T G  L +   P+   L I  +P   
Sbjct: 336 PCSVAPHDSQLISSTILINEMNGVGEK-LSAKENTVG-MLRQEVLPLTLELEILEHPQEE 393

Query: 198 LPCSCSPTPGQPLRIASISPS 260
           L   C+PTP  P  + + SP+
Sbjct: 394 LKVECTPTPIAPSMLPAFSPA 414

>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)|
          Length = 174

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 80  PRRKPERSIHEGGDRRRGAAP-ACRSGGRPPQDLLKS 187
           P  KPER   +GGD+ +G  P   +  G PPQ+  KS
Sbjct: 134 PPGKPERPPPQGGDQSQGPPPHPGKPEGPPPQEGNKS 170

>YPFI_ECOLI (P76562) Hypothetical protein ypfI|
          Length = 671

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 391 FPRMALQSTIQARSLSTEHFVRKFSTRFQHAT*FTRRIPKR 269
           FPR  L +T+Q    +   F+ KF  RF H   F  + P R
Sbjct: 279 FPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFELQQPIR 319

>DNPEP_HUMAN (Q9ULA0) Aspartyl aminopeptidase (EC 3.4.11.21)|
          Length = 475

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 373 QSTIQARSLSTEHFVRKFSTRFQHAT*FTRRIPK 272
           +S   A+SL TE  +R+ S   QH T F   IPK
Sbjct: 306 ESAQGAQSLLTELVLRRISASCQHPTAFEEAIPK 339

>OPRM_MOUSE (P42866) Mu-type opioid receptor (MOR-1)|
          Length = 398

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 162 GHLRIC*NPSALLPCSCSPTPGQPLRIASISPSDS 266
           G++  C +P  L P SCSP PG  L ++ +  + S
Sbjct: 8   GNISDCSDP--LAPASCSPAPGSWLNLSHVDGNQS 40

>CUT2_CAEEL (P34682) Cuticlin-2 precursor|
          Length = 231

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = +3

Query: 42  PRLSLSALA*GSCRGENPRDRSMRAGTAGGELLRRADPVVGH 167
           PRLSL +L  G C G  P   +  A  AGG     A PV G+
Sbjct: 56  PRLSLPSLG-GGCGGPAPCAAAPIAAPAGGYATAPAAPVGGY 96

>TF3C1_MOUSE (Q8K284) General transcription factor 3C polypeptide 1 (Transcription|
            factor IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa
            subunit) (TFIIIC220) (TFIIIC box B-binding subunit)
          Length = 2101

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = -2

Query: 233  RLAGSRRTGAREQC*RISADPEVADHRICTPEQLPAGGPRPHGSISRVFSSARTLG 66
            R+A S R GA EQ          A  ++  PE   AGGPR     +   S    LG
Sbjct: 1886 RVAASPRPGAEEQA------EAQAPAQLAAPEDADAGGPRQENQENVGVSGLEQLG 1935

>PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precursor (Salivary|
           proline-rich protein) [Contains: Basic peptide IB-6;
           Peptide P-H]
          Length = 392

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 80  PRRKPERSIHEGGDRRRGAAPACRSGGRPPQ 172
           P  KP+    +GG+R +G  P  +  G PPQ
Sbjct: 236 PPGKPQGPPQQGGNRPQGPPPPGKPQGPPPQ 266

>RAE1L_ARATH (Q38942) Rae1-like protein At1g80670|
          Length = 349

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 213 SPTPGQPLRIASISPSDSVLFGILLVNQVACWNL 314
           +P+P   +   S SP   +L      NQV CW +
Sbjct: 21  TPSPADSISSLSFSPRADILVATSWDNQVRCWEI 54

>KCNH2_RABIT (Q8WNY2) Potassium voltage-gated channel subfamily H member 2|
           (Voltage-gated potassium channel subunit Kv11.1)
           (Ether-a-go-go-related gene potassium channel 1) (ERG1)
           (RERG) (ra-erg) (Ether-a-go-go-related protein 1)
           (Eag-related protein 1)
          Length = 1161

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 292 FTRRIPKRTESEGEILAIRRGWPGVGEQEQG 200
           F RR  K TE  GE+ A+  G  G G   +G
Sbjct: 893 FRRRTDKDTEQPGEVSALGPGRAGAGPSSRG 923

>PAIP1_HUMAN (Q9H074) Polyadenylate-binding protein-interacting protein 1|
           (Poly(A)-binding protein-interacting protein 1)
           (PABP-interacting protein 1) (PAIP-1)
          Length = 479

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 110 EGGDRRRGAAPACRSGGRPPQDLLKSF-SIAPLLLFSDSRPTSADCE 247
           EGG    GA PA R+  +PPQ     F    PL     + P  A CE
Sbjct: 27  EGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCE 73

>SYL_AERPE (Q9YD97) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 959

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 149 RSGGRPPQDLLKSFSIAPLLLFSDSRPTSAD 241
           RSGG P +DLL+ F     LL +   P +A+
Sbjct: 757 RSGGEPREDLLRRFIEVQTLLIAPFAPHTAE 787

>YCY9_YEAST (P25657) Hypothetical 18.0 kDa protein in GIT1-PAU3 intergenic|
           region
          Length = 155

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 341 RTFREKILHQIPACDLIHEEDPE 273
           RTF++ ILH+IP CD   E D E
Sbjct: 50  RTFKDMILHEIP-CDSCTESDYE 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,949,136
Number of Sequences: 219361
Number of extensions: 1228777
Number of successful extensions: 3789
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3785
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)