>gb|AC112230.5| Homo sapiens BAC clone RP11-85D18 from 2, complete sequence
          Length = 196480

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 18    ttcccactctcacccgcccccca 40
             |||||||||||||||||||||||
Sbjct: 80074 ttcccactctcacccgcccccca 80052

>ref|XM_429433.1| PREDICTED: Gallus gallus LOC416464 (LOC416464), mRNA
          Length = 850

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 aggatctgctgaaatccttc 190
           ||||||||||||||||||||
Sbjct: 475 aggatctgctgaaatccttc 456

>gb|AC110102.6| Rattus norvegicus 4 BAC CH230-209C7 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 219273

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 110    gagggcggggaccgccggcggggagctg 137
              ||||||||||| |||| |||||||||||
Sbjct: 120744 gagggcggggagcgcccgcggggagctg 120771

>gb|AC087102.3| Rattus norvegicus strain Brown Norway clone RP31-331N5, complete sequence
          Length = 151673

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 110    gagggcggggaccgccggcggggagctg 137
              ||||||||||| |||| |||||||||||
Sbjct: 116184 gagggcggggagcgcccgcggggagctg 116157

>emb|CR847512.10| Zebrafish DNA sequence from clone DKEYP-13G11 in linkage group 9,
              complete sequence
          Length = 169581

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    attgttgattgcaaagccat 382
              ||||||||||||||||||||
Sbjct: 135609 attgttgattgcaaagccat 135628

>gb|AC122305.4| Mus musculus BAC clone RP23-284E19 from 9, complete sequence
          Length = 192434

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ctcacccgccccccaccctc 45
             ||||||||||||||||||||
Sbjct: 21382 ctcacccgccccccaccctc 21401

>gb|AF489529.1| Rattus norvegicus caveolin 1 gene, promoter region and partial cds
          Length = 6809

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 110  gagggcggggaccgccggcggggagctg 137
            ||||||||||| |||| |||||||||||
Sbjct: 2428 gagggcggggagcgcccgcggggagctg 2401

>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 267509

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   ttgcaaagccattctgggga 390
             ||||||||||||||||||||
Sbjct: 94108 ttgcaaagccattctgggga 94127

>gb|AC023173.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-11G22, complete
              sequence
          Length = 203451

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 110    gagggcggggaccgccggcggggagctg 137
              |||||||||||  |||||||||||||||
Sbjct: 106228 gagggcggggagtgccggcggggagctg 106201

>emb|BX248308.11| Zebrafish DNA sequence from clone DKEY-247M21 in linkage group 21,
             complete sequence
          Length = 171606

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     actcttccacactcttccca 23
             ||||||||||||||||||||
Sbjct: 95914 actcttccacactcttccca 95895

>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 110    gagggcggggaccgccggcggggagctg 137
              ||||||||||| |||| |||||||||||
Sbjct: 322432 gagggcggggagcgcccgcggggagctg 322405

>gb|BC086670.1| Mus musculus POU domain, class 3, transcription factor 4, mRNA (cDNA
            clone IMAGE:30640228)
          Length = 2803

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 16   tcttcccactctcacccgccccccaccc 43
            ||||||||| ||| ||||||||||||||
Sbjct: 1632 tcttcccaccctcccccgccccccaccc 1605

>gb|AF124227.1|AF124227 Mus musculus caveolin-1 gene, promoter region and 5' UTR, partial
            sequence
          Length = 1311

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 110  gagggcggggaccgccggcggggagctg 137
            |||||||||||  |||||||||||||||
Sbjct: 1086 gagggcggggagtgccggcggggagctg 1059

>gb|U22062.1|RNU22062 Rattus norvegicus neurogranin/RC3 protein (Ng/RC3) gene, complete cds
          Length = 12728

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 17    cttcccactctcacccgccccccaccct 44
             |||||||||| | |||||||||||||||
Sbjct: 12476 cttcccactccctcccgccccccaccct 12449

>emb|AL672221.14| Mouse DNA sequence from clone RP23-57B14 on chromosome X, complete
             sequence
          Length = 189048

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 16    tcttcccactctcacccgccccccaccc 43
             ||||||||| ||| ||||||||||||||
Sbjct: 91664 tcttcccaccctcccccgccccccaccc 91637

>emb|X66603.1|MMPOU4 M.musculus brain-4 mRNA containing POU domain
          Length = 2782

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 16   tcttcccactctcacccgccccccaccc 43
            ||||||||| ||| ||||||||||||||
Sbjct: 1610 tcttcccaccctcccccgccccccaccc 1583

>gb|M88301.1|MUSPOUDOMC Mouse brain-4 POU-domain protein, complete cds
          Length = 2500

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 16   tcttcccactctcacccgccccccaccc 43
            ||||||||| ||| ||||||||||||||
Sbjct: 2067 tcttcccaccctcccccgccccccaccc 2040


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,595,909
Number of Sequences: 3902068
Number of extensions: 2595909
Number of successful extensions: 50566
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50540
Number of HSP's gapped (non-prelim): 26
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)