ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33g11 |
|---|---|
| Clone Library Name | barley_pub |
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1840 Score = 276 bits (707), Expect = 1e-74 Identities = 136/141 (96%), Positives = 138/141 (97%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L+E+NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF RTLPHFTKDDYGPES Sbjct: 757 LAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPES 816 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV Sbjct: 817 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 876 Query: 361 RNSLGDVI*FLYGEDGMDAVW 423 RNSLGDVI FLYGEDGMDAVW Sbjct: 877 RNSLGDVIQFLYGEDGMDAVW 897
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1745 Score = 245 bits (625), Expect = 4e-65 Identities = 117/139 (84%), Positives = 130/139 (93%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L + NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI FGF DRTLPHF+KDDY PES Sbjct: 737 LKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPES 796 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 +GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT Sbjct: 797 KGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTT 856 Query: 361 RNSLGDVI*FLYGEDGMDA 417 RNSLG++I F+YGEDGMDA Sbjct: 857 RNSLGNIIQFVYGEDGMDA 875
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) (B220) Length = 1733 Score = 244 bits (623), Expect = 6e-65 Identities = 118/139 (84%), Positives = 129/139 (92%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L + NN+K MV AGSKGSFINI+QM+ACVGQQ+VEGKRI FGFVDRTLPHF+KDDY PES Sbjct: 737 LKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPES 796 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 +GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+EDIMV YD T Sbjct: 797 KGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTT 856 Query: 361 RNSLGDVI*FLYGEDGMDA 417 RNSLG+VI F+YGEDGMDA Sbjct: 857 RNSLGNVIQFIYGEDGMDA 875
>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1752 Score = 241 bits (614), Expect = 7e-64 Identities = 116/139 (83%), Positives = 127/139 (91%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L +SNN+K MV AGSKGSFINISQM+ACVGQQ VEGKRIPFGF RTLPHF KDD PES Sbjct: 743 LKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPES 802 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 RGF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKAMED+MV+YDGTV Sbjct: 803 RGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTV 862 Query: 361 RNSLGDVI*FLYGEDGMDA 417 RN++GD+I F YGEDG+DA Sbjct: 863 RNAMGDIIQFAYGEDGLDA 881
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1853 Score = 235 bits (599), Expect = 4e-62 Identities = 112/141 (79%), Positives = 123/141 (87%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 LSE NN K+MV +GSKGS INISQ+ ACVGQQNVEGKRIPFGF RTLPHF KDDYGPES Sbjct: 754 LSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPES 813 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 +GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTV Sbjct: 814 KGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTV 873 Query: 361 RNSLGDVI*FLYGEDGMDAVW 423 RNSL ++ YGEDG+D +W Sbjct: 874 RNSLAQMVQLRYGEDGLDGMW 894
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 235 bits (599), Expect = 4e-62 Identities = 112/141 (79%), Positives = 123/141 (87%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 LSE NN K+MV +GSKGS INISQ+ ACVGQQNVEGKRIPFGF RTLPHF KDDYGPES Sbjct: 750 LSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPES 809 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 +GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTV Sbjct: 810 KGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTV 869 Query: 361 RNSLGDVI*FLYGEDGMDAVW 423 RNSL ++ YGEDG+D +W Sbjct: 870 RNSLAQMVQLRYGEDGLDGMW 890
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1887 Score = 230 bits (586), Expect = 1e-60 Identities = 111/137 (81%), Positives = 122/137 (89%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L+E NNLKAMV +GSKGS INISQ+ ACVGQQNVEGKRIP+GF RTLPHF KDDYGPES Sbjct: 752 LTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPES 811 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 RGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTV Sbjct: 812 RGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTV 871 Query: 361 RNSLGDVI*FLYGEDGM 411 RNS+G +I YGEDG+ Sbjct: 872 RNSVGQLIQLRYGEDGL 888
>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 2452 Score = 226 bits (575), Expect = 2e-59 Identities = 109/137 (79%), Positives = 120/137 (87%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L E NN+ +MV +GSKGS INISQ+ +CVGQQNVEGKRIPFGF R+LPHF K DYGPES Sbjct: 897 LDERNNIFSMVASGSKGSIINISQIISCVGQQNVEGKRIPFGFNHRSLPHFIKFDYGPES 956 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 RGFV NSYL GLTPQE FFHAMGGREG+IDTA KTSETGYIQRRL+KAMED+MV+YD TV Sbjct: 957 RGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDVMVQYDRTV 1016 Query: 361 RNSLGDVI*FLYGEDGM 411 RNS GD+I FLYGEDGM Sbjct: 1017 RNSYGDIIQFLYGEDGM 1033
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 223 bits (568), Expect = 1e-58 Identities = 108/137 (78%), Positives = 119/137 (86%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 LSE NN K+MV +G+KGS INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPES Sbjct: 760 LSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPES 819 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 RGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TV Sbjct: 820 RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATV 879 Query: 361 RNSLGDVI*FLYGEDGM 411 RNS+ V+ YGEDG+ Sbjct: 880 RNSINQVVQLRYGEDGL 896
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 223 bits (568), Expect = 1e-58 Identities = 108/137 (78%), Positives = 119/137 (86%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 LSE NN K+MV +G+KGS INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPES Sbjct: 760 LSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPES 819 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 RGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TV Sbjct: 820 RGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATV 879 Query: 361 RNSLGDVI*FLYGEDGM 411 RNS+ V+ YGEDG+ Sbjct: 880 RNSINQVVQLRYGEDGL 896
>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1599 Score = 217 bits (553), Expect = 8e-57 Identities = 107/141 (75%), Positives = 120/141 (85%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 LSE+NN+K MV AGSKGSFINISQ+TACVGQQNVEGKRIPFGF RTLPHF KDDY +S Sbjct: 731 LSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKS 790 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 RGFVENSYL GL P+EFFFHAMGGREGLIDTA+KT+ETGYIQRRLVKA+ED +V+ D +V Sbjct: 791 RGFVENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESV 850 Query: 361 RNSLGDVI*FLYGEDGMDAVW 423 R+ G V YGEDG DA + Sbjct: 851 RSGNGLVYQIKYGEDGFDATF 871
>RPB2_TRYBB (P17546) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1766 Score = 182 bits (463), Expect = 2e-46 Identities = 85/135 (62%), Positives = 103/135 (76%) Frame = +1 Query: 10 SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 +N+ K M+ AGSKG+ +NI Q+ VGQQNV G RIPFGF RTLPHF DDYG SRG Sbjct: 743 TNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGM 802 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNS 369 Y+ GL P EFFFH M GREGLIDTAVKTS+TGY+QR+L+KA+ED+ YDGTVRN+ Sbjct: 803 ANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNA 862 Query: 370 LGDVI*FLYGEDGMD 414 ++I F+YGEDG+D Sbjct: 863 NDELIQFMYGEDGLD 877
>RPB1_TRYBB (P17545) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1766 Score = 182 bits (463), Expect = 2e-46 Identities = 85/135 (62%), Positives = 103/135 (76%) Frame = +1 Query: 10 SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 +N+ K M+ AGSKG+ +NI Q+ VGQQNV G RIPFGF RTLPHF DDYG SRG Sbjct: 743 TNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGM 802 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNS 369 Y+ GL P EFFFH M GREGLIDTAVKTS+TGY+QR+L+KA+ED+ YDGTVRN+ Sbjct: 803 ANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNA 862 Query: 370 LGDVI*FLYGEDGMD 414 ++I F+YGEDG+D Sbjct: 863 NDELIQFMYGEDGLD 877
>RPC1_HUMAN (O14802) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)| (RPC155) (RPC1) Length = 1391 Score = 182 bits (462), Expect = 3e-46 Identities = 87/138 (63%), Positives = 107/138 (77%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L +SN+ M GSKGSFINISQM ACVGQQ + G R+P GF +R+LPHF K P + Sbjct: 771 LDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAA 830 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 +GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+QRRLVK++ED+ +YD TV Sbjct: 831 KGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTV 890 Query: 361 RNSLGDVI*FLYGEDGMD 414 R+S GD+I F+YG DG+D Sbjct: 891 RSSTGDIIQFIYGGDGLD 908
>RPC1_SCHPO (O94666) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)| Length = 1405 Score = 179 bits (454), Expect = 2e-45 Identities = 84/141 (59%), Positives = 108/141 (76%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L +N+ M T GSKGS IN+SQM ACVGQQ + GKR+P GF DR+LPHF K+ P + Sbjct: 765 LGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPLA 824 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 +GFV NS+ GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+ YDGTV Sbjct: 825 KGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGTV 884 Query: 361 RNSLGDVI*FLYGEDGMDAVW 423 R+S DV+ F+YG+DG+D + Sbjct: 885 RSSNSDVVQFVYGDDGLDPTY 905
>RPC1_TRYBB (P08968) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)| Length = 1530 Score = 177 bits (448), Expect = 1e-44 Identities = 86/135 (63%), Positives = 105/135 (77%) Frame = +1 Query: 10 SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 +N MV +GSKGS +NI+QM ACVGQQ V GKRI F DR+LPHF + + P +RGF Sbjct: 776 NNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFEEAPAARGF 835 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNS 369 V NS+ GL+P EFFFH M GREGL+DTAVKT+ETGYI RRL+KAME++ V+YDGTVRN+ Sbjct: 836 VANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYDGTVRNT 895 Query: 370 LGDVI*FLYGEDGMD 414 GDVI +GEDG+D Sbjct: 896 KGDVIQLRFGEDGLD 910
>RPC1_DEBHA (Q6BI69) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)| Length = 1457 Score = 171 bits (433), Expect = 7e-43 Identities = 79/138 (57%), Positives = 103/138 (74%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L +N M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+ P+S Sbjct: 781 LDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQS 840 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 +GFV NS+ GLTP EF FH++ GREGL+DTAVKT+ETGY+ RRL+K+++D+ +YD TV Sbjct: 841 KGFVRNSFFSGLTPPEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDHTV 900 Query: 361 RNSLGDVI*FLYGEDGMD 414 RNS ++ F YG DG+D Sbjct: 901 RNSSNGIVQFTYGGDGLD 918
>RPC1_YEAST (P04051) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)| (C160) Length = 1460 Score = 167 bits (423), Expect = 9e-42 Identities = 79/141 (56%), Positives = 104/141 (73%), Gaps = 3/141 (2%) Frame = +1 Query: 1 LSESNNLKA---MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 171 ++E +N A M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF K+ Sbjct: 782 INELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKT 841 Query: 172 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 P+S+GFV NS+ GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+ +YD Sbjct: 842 PQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYD 901 Query: 352 GTVRNSLGDVI*FLYGEDGMD 414 TVR S ++ F YG DG+D Sbjct: 902 NTVRTSANGIVQFTYGGDGLD 922
>RPOA1_THECE (P31813) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 905 Score = 166 bits (420), Expect = 2e-41 Identities = 76/138 (55%), Positives = 104/138 (75%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L SN+ M G++G +NI+QM A +GQQ++ GKR+ G+ +R L HF D G + Sbjct: 741 LGMSNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRERVLTHFKPGDLGARA 800 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 RGFV NSY GLTPQE+FFHAMGGREGL+DTAV+T+++GY+QRRL+ A++D+ V+YDGTV Sbjct: 801 RGFVINSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTV 860 Query: 361 RNSLGDVI*FLYGEDGMD 414 R+ G ++ F YGEDG+D Sbjct: 861 RDPTGIIVQFRYGEDGID 878
>RPOA1_HALSA (Q9HM79) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 971 Score = 166 bits (420), Expect = 2e-41 Identities = 76/138 (55%), Positives = 102/138 (73%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 186 E N M +G++GS +N++QM CVGQQ V G+RI G+ DRTL HF +D E+ G Sbjct: 778 EDNPAVVMANSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEAHG 837 Query: 187 FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 366 FVENSY GLTP+EFFFHAMGGREGL+DTAV+TS++GY+QRRL+ A+ ++ +YDGTVR+ Sbjct: 838 FVENSYTSGLTPKEFFFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRD 897 Query: 367 SLGDVI*FLYGEDGMDAV 420 + ++ F +GEDG V Sbjct: 898 TSDTIVQFEFGEDGTSPV 915
>RPOA1_METJA (Q58445) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| [Contains: Mja rpoA1 intein (Mja rpol A' intein)] Length = 1341 Score = 166 bits (419), Expect = 3e-41 Identities = 76/138 (55%), Positives = 104/138 (75%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L N+ M G++G+ +N++QM AC+GQQ+V GKRI G+ R LPHF K D G S Sbjct: 1179 LGLDNHAVIMAVTGARGNILNLTQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGARS 1238 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 GFV +SY +GL+P EFFFHAMGGREGL+D AV+T+++GY+QRRL+ A++D+ ++DGTV Sbjct: 1239 HGFVRSSYKKGLSPTEFFFHAMGGREGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTV 1298 Query: 361 RNSLGDVI*FLYGEDGMD 414 R+S G +I F YGEDG+D Sbjct: 1299 RDSRGIMIQFKYGEDGID 1316
>RPC1_PLAFA (P27625) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)| Length = 2339 Score = 163 bits (412), Expect = 2e-40 Identities = 76/129 (58%), Positives = 101/129 (78%) Frame = +1 Query: 28 MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 207 M +G+KG+ INI+QM ACVGQQNV G+RI GF++RTLPHF ESRGFV+NS+ Sbjct: 891 MFNSGAKGALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFY 950 Query: 208 RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI* 387 GL+P EFFFH M GREGL+DTAVKT+ETGY+QRRL+KA+ED+ + YD +VR+ ++ Sbjct: 951 TGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQ 1010 Query: 388 FLYGEDGMD 414 F+YG+D ++ Sbjct: 1011 FIYGDDALN 1019
>RPOA1_SULAC (P11512) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 880 Score = 163 bits (412), Expect = 2e-40 Identities = 75/141 (53%), Positives = 107/141 (75%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L NN+ M G++GS +NI+QMTA +GQQ+V G+RI G+ +RTL F D PE+ Sbjct: 719 LDPFNNVYIMAITGARGSELNITQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEA 778 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 RGFV+NS++RGL+P E FFHA GGREGL+DTAVKTS++GY+QRRL+ A+ D+ ++YDGTV Sbjct: 779 RGFVKNSFMRGLSPYEMFFHAAGGREGLVDTAVKTSQSGYMQRRLINALSDLRIEYDGTV 838 Query: 361 RNSLGDVI*FLYGEDGMDAVW 423 R+ GD++ +YG+D + ++ Sbjct: 839 RSLYGDIVQVVYGDDAVHPMY 859
>RPOA1_HALMO (P15349) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| (Fragment) Length = 349 Score = 158 bits (399), Expect = 6e-39 Identities = 73/138 (52%), Positives = 101/138 (73%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 186 + N M +G++GS +N++QM ACVGQQ V G+RI G+ RTL HF D E+ G Sbjct: 144 DDNPAVIMAESGARGSMLNLTQMAACVGQQAVRGERINRGYEGRTLSHFKPGDLSAEAHG 203 Query: 187 FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 366 FVE+SY GLTP+EFFFHAMGGREGL+DTAV+TS++GY+QRRL+ A+ ++ +YDGTVR+ Sbjct: 204 FVEDSYRSGLTPREFFFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRD 263 Query: 367 SLGDVI*FLYGEDGMDAV 420 + +++ F +GED V Sbjct: 264 TSDNIVQFEFGEDNTSPV 281
>RPOA1_METTH (O27125) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 870 Score = 156 bits (395), Expect = 2e-38 Identities = 73/136 (53%), Positives = 103/136 (75%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 186 + N+ M G++GS +N++Q+TACVGQQ+V G RI G+ +RTLPHF K + G +SRG Sbjct: 710 DENHAVIMALTGARGSMLNLTQITACVGQQSVRGGRISRGYDNRTLPHFKKGELGAKSRG 769 Query: 187 FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 366 FV +SY GL P EFFFHAMGGREGL+DTA++T+++GY+QRRLV A++D+ V +G V + Sbjct: 770 FVHSSYKEGLDPIEFFFHAMGGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVD 829 Query: 367 SLGDVI*FLYGEDGMD 414 + G +I +GEDG+D Sbjct: 830 NRGVIIQNRFGEDGVD 845
>RPOA1_SULSO (Q980R2) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 880 Score = 155 bits (392), Expect = 4e-38 Identities = 72/137 (52%), Positives = 99/137 (72%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L N M G++GS +NI+QM A +GQQ+V G+RI G++ RTLPHF D PE+ Sbjct: 719 LDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEA 778 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 RGF+ +S+ GL P E FFHA GGREGL+DTAV+TS++GY+QRRL+ A+ D+ +YDGTV Sbjct: 779 RGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTV 838 Query: 361 RNSLGDVI*FLYGEDGM 411 R+ G+V+ YG+DG+ Sbjct: 839 RSLYGEVVQVAYGDDGV 855
>RPOA1_METVA (P41556) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 889 Score = 154 bits (388), Expect = 1e-37 Identities = 73/138 (52%), Positives = 100/138 (72%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 LS+ N+ M G++GS +NI+ M A VGQQ+V G R+ G+ RTLPHF + +S Sbjct: 727 LSKENHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKS 786 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 GFV + Y +GL P E+FFHAMGGREGL+D AV+T+++GY+QRRLV A++DI +YDGTV Sbjct: 787 HGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIKAEYDGTV 846 Query: 361 RNSLGDVI*FLYGEDGMD 414 R+S G ++ F YGED +D Sbjct: 847 RDSRGIIVQFNYGEDLVD 864
>RPA1_DROME (P91875) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| Length = 1642 Score = 149 bits (377), Expect = 2e-36 Identities = 71/135 (52%), Positives = 97/135 (71%) Frame = +1 Query: 10 SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 SNNL+ MV +G+KGS +N Q++ +GQ +EGKR P ++LP FT + P+S GF Sbjct: 869 SNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGF 928 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNS 369 ++ ++ G+ PQ+FFFH M GREGLIDTAVKTS +GY+QR L+K +E + V YD TVR+S Sbjct: 929 IDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDS 988 Query: 370 LGDVI*FLYGEDGMD 414 V+ FLYGEDG+D Sbjct: 989 DNSVVQFLYGEDGLD 1003
>RPOA1_THEAC (Q03585) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 885 Score = 146 bits (368), Expect = 2e-35 Identities = 65/129 (50%), Positives = 97/129 (75%) Frame = +1 Query: 28 MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 207 M +G++ + +NIS++ VGQQ+V G R+ G+ +RTLPHF + D G ++RGFV +SY+ Sbjct: 735 MARSGARATMLNISEVAGIVGQQSVRGGRLNRGYYNRTLPHFKRGDIGADARGFVRSSYM 794 Query: 208 RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI* 387 GL+P E+FFH++GGREGL+DTAV+TS +GY+QRRL+ A ED+ V V++++G +I Sbjct: 795 TGLSPTEYFFHSIGGREGLVDTAVRTSRSGYMQRRLINAFEDLKVDDSREVKDTVGSLIQ 854 Query: 388 FLYGEDGMD 414 YGEDG+D Sbjct: 855 IRYGEDGID 863
>RPA1_MOUSE (O35134) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| (RNA polymerase I 194 kDa subunit) (RPA194) Length = 1717 Score = 142 bits (359), Expect = 3e-34 Identities = 67/134 (50%), Positives = 96/134 (71%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 NNL+ MV +G+KGS +N Q++ +GQ +EG+R P ++LP F ++ P + GFV Sbjct: 899 NNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFV 958 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 372 +L G+ P EFFFH M GREGL+DTAVKTS +GY+QR ++K +E ++++YD TVR+S Sbjct: 959 TGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSD 1018 Query: 373 GDVI*FLYGEDGMD 414 G V+ FLYGEDG+D Sbjct: 1019 GSVVQFLYGEDGLD 1032
>RPA1_RAT (O54889) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| (RNA polymerase I 194 kDa subunit) (RPA194) Length = 1716 Score = 142 bits (359), Expect = 3e-34 Identities = 67/134 (50%), Positives = 96/134 (71%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 NNL+ MV +G+KGS +N Q++ +GQ +EG+R P ++LP F ++ P + GFV Sbjct: 899 NNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFV 958 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 372 +L G+ P EFFFH M GREGL+DTAVKTS +GY+QR ++K +E ++++YD TVR+S Sbjct: 959 TGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSD 1018 Query: 373 GDVI*FLYGEDGMD 414 G V+ FLYGEDG+D Sbjct: 1019 GSVVQFLYGEDGLD 1032
>RPA1_SCHPO (P15398) DNA-directed RNA polymerase I 190 kDa polypeptide (EC| 2.7.7.6) Length = 1689 Score = 142 bits (358), Expect = 3e-34 Identities = 64/134 (47%), Positives = 97/134 (72%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N+++ M +G+KGS +N+SQ++ +GQQ +EG+R+P ++LP F + +S GF+ Sbjct: 936 NHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFI 995 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 372 + +L G+ PQE++FH M GREGLIDTAVKTS +GY+QR L+K +E + V+YD TVR+S Sbjct: 996 ASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSD 1055 Query: 373 GDVI*FLYGEDGMD 414 G ++ F YGED +D Sbjct: 1056 GSIVQFHYGEDSLD 1069
>RPO1_MIMIV (Q7T6X5) DNA-directed RNA polymerase subunit 1 (EC 2.7.7.6)| Length = 1495 Score = 141 bits (356), Expect = 6e-34 Identities = 69/128 (53%), Positives = 92/128 (71%) Frame = +1 Query: 31 VTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLR 210 +++GS G +N Q+ C+GQ VEGKRI F RTLP F K D SRGF NS++ Sbjct: 744 ISSGSSGEPMNAGQIAGCIGQVIVEGKRIQIRFNGRTLPMFPKFDDSAFSRGFCRNSFIE 803 Query: 211 GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI*F 390 GL P EFFF M GREG+I+TA+KT++TGYIQR+LVK +EDI +YDGTVRN+ G +I Sbjct: 804 GLGPFEFFFQVMAGREGIINTAIKTADTGYIQRKLVKMLEDIKQEYDGTVRNANGKLISC 863 Query: 391 LYGEDGMD 414 +YG++G++ Sbjct: 864 VYGDNGIN 871
>RPA1_HUMAN (O95602) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| (RNA polymerase I 194 kDa subunit) (RPA194) Length = 1717 Score = 139 bits (350), Expect = 3e-33 Identities = 66/134 (49%), Positives = 94/134 (70%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N L+ MV +G+KGS +N Q++ +GQ +EG+ P ++LP F ++ P + GFV Sbjct: 892 NTLQLMVQSGAKGSTVNTMQISCLLGQIELEGRSTPLMASGKSLPCFEPYEFTPRAGGFV 951 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 372 +L G+ P EFFFH M GREGL+DTAVKTS +GY+QR ++K +E ++V+YD TVR+S Sbjct: 952 TGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSD 1011 Query: 373 GDVI*FLYGEDGMD 414 G V+ FLYGEDG+D Sbjct: 1012 GSVVQFLYGEDGLD 1025
>RPC1_GIALA (P25202) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)| Length = 1741 Score = 132 bits (333), Expect = 3e-31 Identities = 67/137 (48%), Positives = 88/137 (64%) Frame = +1 Query: 10 SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 +N M GSKGS INI+QM +GQQ+ G R P F R+ P+F P ++GF Sbjct: 1029 TNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFYTRSTPYFYHYSKEPNAKGF 1088 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNS 369 + NS+ GL P EF HA GR+G+ID+A KT++TGY+QRRLVK +ED+ V YD TVRNS Sbjct: 1089 ILNSFYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRRLVKCLEDLSVSYDFTVRNS 1148 Query: 370 LGDVI*FLYGEDGMDAV 420 V+ F +G DG D + Sbjct: 1149 KKSVVQFRFGHDGFDPI 1165
>RPA1_YEAST (P10964) DNA-directed RNA polymerase I 190 kDa polypeptide (EC| 2.7.7.6) (A190) Length = 1664 Score = 132 bits (332), Expect = 3e-31 Identities = 60/134 (44%), Positives = 93/134 (69%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N+++AM +G+KGS +N+SQ+ +GQQ +EG+R+P +TLP F + + G+V Sbjct: 923 NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYV 982 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 372 + + G+ PQE++FH M GREGLIDTAVKTS +GY+QR L K +E + V YD ++R++ Sbjct: 983 KGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDAD 1042 Query: 373 GDVI*FLYGEDGMD 414 G ++ F+YG D +D Sbjct: 1043 GTLVQFMYGGDAID 1056
>RPOA1_METTW (P09846) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 865 Score = 132 bits (332), Expect = 3e-31 Identities = 65/136 (47%), Positives = 96/136 (70%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 186 + N+ M G++G+ +N++Q+TACVGQQ+V G RI G+ +RTLPHF K + G +SRG Sbjct: 709 DENHAVIMALTGARGAMLNLTQITACVGQQSVHGGRITRGYDNRTLPHFKKGELGAKSRG 768 Query: 187 FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 366 FV +SY EF MGGREGL+DTA++T+++GY+QRRLV A++D+ V +G V + Sbjct: 769 FVHSSYKEDSILLEF----MGGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVD 824 Query: 367 SLGDVI*FLYGEDGMD 414 + G +I +GEDG+D Sbjct: 825 NRGVIIQTRFGEDGVD 840
>RPA1_TRYBB (P16355) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| Length = 1744 Score = 122 bits (306), Expect = 4e-28 Identities = 62/134 (46%), Positives = 89/134 (66%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N+L M +G+KGS +N +QM+ +GQQ +G R+ +TLP F ++ S GF Sbjct: 884 NHLLLMTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARSFGFA 943 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 372 S+ G+ P E+ HAM GR+GLIDTAVKTS +G++QR L+K +E ++V +D TVR+S Sbjct: 944 MGSFASGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTVRDSN 1003 Query: 373 GDVI*FLYGEDGMD 414 G VI F+YG DG+D Sbjct: 1004 GSVIQFMYGGDGLD 1017
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (Fragment) Length = 902 Score = 102 bits (254), Expect = 4e-22 Identities = 50/58 (86%), Positives = 53/58 (91%) Frame = +1 Query: 241 AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI*FLYGEDGMD 414 AMGGREGLIDTAVKTSETGYIQR LVKAMED+ +KYD TVRNSLGDVI F YGEDG+D Sbjct: 1 AMGGREGLIDTAVKTSETGYIQRCLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGID 58
>RPO1_ASFB7 (P42486) DNA-directed RNA polymerase subunit 1 (EC 2.7.7.6)| Length = 1450 Score = 85.1 bits (209), Expect = 6e-17 Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 1/138 (0%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF-VDRTLPHFTKDDYGPESR 183 E+N L MV G+KGS N+ + A +GQ + +RI F RTL ++ + ++ Sbjct: 726 ETNGLFQMVATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSFGRTLVYYPRFALEAQAY 785 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVR 363 GF+ NSY+ GLT EF F M GR LI+ A+ TS TGY R+ + ++ +V Y V Sbjct: 786 GFICNSYIAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVS 845 Query: 364 NSLGDVI*FLYGEDGMDA 417 ++ LYGEDG+DA Sbjct: 846 IDT-RLVQQLYGEDGLDA 862
>RPO1_VACCV (P07392) DNA-directed RNA polymerase 147 kDa polypeptide (EC 2.7.7.6)| Length = 1287 Score = 76.3 bits (186), Expect = 3e-14 Identities = 39/116 (33%), Positives = 62/116 (53%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 NNL M AG K + + + GQQ ++G+ + R LP++ D PE RG++ Sbjct: 659 NNLLKMAKAGYKVNPTELMYILGTYGQQRIDGEPAETRVLGRVLPYYLPDSKDPEGRGYI 718 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 NS +GLT +++F + R D +TS TG + R+++K MED++V G V Sbjct: 719 LNSLTKGLTGSQYYFSMLVARSQSTDIVCETSRTGTLARKIIKKMEDMVVDGYGQV 774
>RPO1_VARV (P33053) DNA-directed RNA polymerase 147 kDa polypeptide (EC 2.7.7.6)| Length = 1286 Score = 76.3 bits (186), Expect = 3e-14 Identities = 39/116 (33%), Positives = 62/116 (53%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 NNL M AG K + + + GQQ ++G+ + R LP++ D PE RG++ Sbjct: 659 NNLLKMAKAGYKVNPTELMYILGTYGQQRIDGEPAETRVLGRVLPYYLPDSKDPEGRGYI 718 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 NS +GLT +++F + R D +TS TG + R+++K MED++V G V Sbjct: 719 LNSLTKGLTGSQYYFSMLVARSQSTDIVCETSRTGTLARKIIKKMEDMVVDGYGQV 774
>RPO1_VACCC (P20504) DNA-directed RNA polymerase 147 kDa polypeptide (EC 2.7.7.6)| Length = 1286 Score = 76.3 bits (186), Expect = 3e-14 Identities = 39/116 (33%), Positives = 62/116 (53%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 NNL M AG K + + + GQQ ++G+ + R LP++ D PE RG++ Sbjct: 659 NNLLKMAKAGYKVNPTELMYILGTYGQQRIDGEPAETRVLGRVLPYYLPDSKDPEGRGYI 718 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 NS +GLT +++F + R D +TS TG + R+++K MED++V G V Sbjct: 719 LNSLTKGLTGSQYYFSMLVARSQSTDIVCETSRTGTLARKIIKKMEDMVVDGYGQV 774
>RPO1_VACCA (O57204) DNA-directed RNA polymerase 147 kDa polypeptide (EC 2.7.7.6)| Length = 1286 Score = 76.3 bits (186), Expect = 3e-14 Identities = 39/116 (33%), Positives = 62/116 (53%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 NNL M AG K + + + GQQ ++G+ + R LP++ D PE RG++ Sbjct: 659 NNLLKMAKAGYKVNPTELMYILGTYGQQRIDGEPAETRVLGRVLPYYLPDSKDPEGRGYI 718 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 NS +GLT +++F + R D +TS TG + R+++K MED++V G V Sbjct: 719 LNSLTKGLTGSQYYFSMLVARSQSTDIVCETSRTGTLARKIIKKMEDMVVDGYGQV 774
>RPO1_FOWPV (Q9J593) DNA-directed RNA polymerase 147 kDa polypeptide (EC 2.7.7.6)| Length = 1287 Score = 74.3 bits (181), Expect = 1e-13 Identities = 37/116 (31%), Positives = 63/116 (54%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N+L M AG K + + + GQQ ++G+ I R LP+F D PE +G++ Sbjct: 660 NSLMKMSCAGYKVNPTELMYILGTYGQQRIDGEPIDTKIYGRVLPYFLPDSKDPEGKGYI 719 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 360 NS ++GLT ++++ + R D +TS TG + R+++K MED++V G + Sbjct: 720 LNSLIQGLTGSQYYYAMLIARSQSTDIVCETSRTGTLARKIIKKMEDMVVDSYGQI 775
>RPOC_TROWT (Q820D6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 63.9 bits (154), Expect = 1e-10 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 1/114 (0%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQ-QNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 + N + MVT+G++G+++ + + G N +G+ IP + Sbjct: 771 DDNTINTMVTSGARGNWLQVRNIAGMRGLVANPKGETIPRPII----------------- 813 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +SY GL+ E+F G R+GL+DTA+KT+++GY+ RRLV +D++V+ Sbjct: 814 ----SSYREGLSVTEYFISTHGARKGLVDTALKTADSGYLTRRLVDVAQDVVVR 863
>RPOC_TROW8 (Q820D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 63.9 bits (154), Expect = 1e-10 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 1/114 (0%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQ-QNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 + N + MVT+G++G+++ + + G N +G+ IP + Sbjct: 771 DDNTINTMVTSGARGNWLQVRNIAGMRGLVANPKGETIPRPII----------------- 813 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +SY GL+ E+F G R+GL+DTA+KT+++GY+ RRLV +D++V+ Sbjct: 814 ----SSYREGLSVTEYFISTHGARKGLVDTALKTADSGYLTRRLVDVAQDVVVR 863
>RPOC_MYCPE (Q8EWX0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1288 Score = 63.2 bits (152), Expect = 3e-10 Identities = 36/111 (32%), Positives = 63/111 (56%) Frame = +1 Query: 10 SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 +N++ M +G++G NIS T G + + K + + + KD Sbjct: 797 TNSIVIMANSGARG---NISNFTQLSGMRGLMSKS--YNYDQKQKSKVIKDTIEVP---- 847 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 ++NS++ GLT E+F + G R+G+ DTA+KTS++GY+ R+LV A +D++V Sbjct: 848 IKNSFIEGLTVSEYFNSSYGARKGMTDTAMKTSKSGYMTRKLVDATQDVIV 898
>RPOC_MYCPN (P75271) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1290 Score = 61.2 bits (147), Expect = 1e-09 Identities = 35/113 (30%), Positives = 62/113 (54%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++G NIS T G + + K F + KD + Sbjct: 804 NSIVVMADSGARG---NISNFTQLFGMRGLMSKS--FNYERNNQSKIIKDTIEVP----I 854 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 ++S+L GLT E+F + G R+G+ DTA+KT+++GY+ R+LV A ++++ +D Sbjct: 855 KHSFLEGLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHELIINHD 907
>RPOC_THEFY (Q47LI6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 60.5 bits (145), Expect = 2e-09 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 1/112 (0%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQ-QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 N + MV +GS+G+ + + Q+ A G N +G+ IP Sbjct: 784 NPVWMMVNSGSRGNPLQVRQIAAIRGLVSNTKGETIPRP--------------------- 822 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +++SY GLT E+F G R+GL DTA++T+++GY+ RRLV +D++V+ Sbjct: 823 IKSSYREGLTVLEYFISTHGQRKGLADTALRTADSGYLTRRLVDVAQDVIVR 874
>RPOC_LEIXX (Q6ACX6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 60.5 bits (145), Expect = 2e-09 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQ-QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 N + MVT+G++G+++ + + G N +G+ IP + Sbjct: 780 NTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPII------------------- 820 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +SY GL+ E+F G R+GL DTA++T+++GY+ RRLV +D++++ D Sbjct: 821 --SSYREGLSVAEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIRED 872
>RPOC_MYCGE (P47582) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1292 Score = 59.7 bits (143), Expect = 3e-09 Identities = 34/113 (30%), Positives = 61/113 (53%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++G NIS T G + + K F + KD + Sbjct: 806 NSIVVMADSGARG---NISNFTQLFGMRGLMSKS--FNYERNNQSKIIKDTIEVP----I 856 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 ++S+ GLT E+F + G R+G+ DTA+KT+++GY+ R+LV A ++++ +D Sbjct: 857 KHSFFEGLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHELIINHD 909
>RPOC_BACHK (Q6HPR5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 59.3 bits (142), Expect = 4e-09 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L++ N + M +G++G+ N +Q+ G N G+ I LP Sbjct: 720 LNKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIE-------LP---------- 762 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD-- 351 +++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ D Sbjct: 763 ----IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDC 818 Query: 352 GTVRNSL 372 GT R L Sbjct: 819 GTDRGLL 825
>RPOC_BACCZ (Q63H97) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 59.3 bits (142), Expect = 4e-09 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L++ N + M +G++G+ N +Q+ G N G+ I LP Sbjct: 720 LNKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIE-------LP---------- 762 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD-- 351 +++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ D Sbjct: 763 ----IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDC 818 Query: 352 GTVRNSL 372 GT R L Sbjct: 819 GTDRGLL 825
>RPOC_BACCR (Q81J47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 59.3 bits (142), Expect = 4e-09 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L++ N + M +G++G+ N +Q+ G N G+ I LP Sbjct: 720 LNKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIE-------LP---------- 762 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD-- 351 +++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ D Sbjct: 763 ----IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDC 818 Query: 352 GTVRNSL 372 GT R L Sbjct: 819 GTDRGLL 825
>RPOC_BACC1 (Q73FA3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 59.3 bits (142), Expect = 4e-09 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L++ N + M +G++G+ N +Q+ G N G+ I LP Sbjct: 720 LNKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIE-------LP---------- 762 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD-- 351 +++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ D Sbjct: 763 ----IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDC 818 Query: 352 GTVRNSL 372 GT R L Sbjct: 819 GTDRGLL 825
>RPOC_BACAN (P77819) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 59.3 bits (142), Expect = 4e-09 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L++ N + M +G++G+ N +Q+ G N G+ I LP Sbjct: 720 LNKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIE-------LP---------- 762 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD-- 351 +++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ D Sbjct: 763 ----IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDC 818 Query: 352 GTVRNSL 372 GT R L Sbjct: 819 GTDRGLL 825
>RPOC_BACLD (Q65PB4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 58.2 bits (139), Expect = 8e-09 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 3/131 (2%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L E N + M +G++G+ N +Q+ G N G+ I LP Sbjct: 720 LDEINPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIE-------LP---------- 762 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD-- 351 +++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++++ Sbjct: 763 ----IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIIRETDC 818 Query: 352 GTVRNSLGDVI 384 GT R L I Sbjct: 819 GTDRGILAKAI 829
>RPOC_PROAC (Q6A6K7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1293 Score = 58.2 bits (139), Expect = 8e-09 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Frame = +1 Query: 4 SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 +++N + MV +G++GS + Q+ A G L K D P Sbjct: 776 TQTNPIHMMVDSGARGSMTQMRQIAAMRG-----------------LVADPKGDIIPRP- 817 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GT 357 +++++ GLT E+F GGR+G DTA++T+++GY+ RRLV +D++V+ + GT Sbjct: 818 --IKSNFREGLTVLEYFISTHGGRKGQADTALRTADSGYLTRRLVDVSQDVIVRENDCGT 875 Query: 358 VR 363 R Sbjct: 876 TR 877
>RPOC_BACHD (Q9Z9M1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 58.2 bits (139), Expect = 8e-09 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L + N + M +G++G+ N +Q+ G N G+ I LP Sbjct: 720 LDKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIE-------LP---------- 762 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ D Sbjct: 763 ----IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVRED 816
>RPOC_BIFLO (Q8G515) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1345 Score = 58.2 bits (139), Expect = 8e-09 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 1/113 (0%) Frame = +1 Query: 10 SNNLKAMVTAGSKGSFINISQMTACVGQ-QNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 186 ++NL +V +G++G+ + I+Q+ G N +G+ IP Sbjct: 800 TSNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRP-------------------- 839 Query: 187 FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 V+++Y GL+ E+F G R+GL DTA++T+E+GY+ RRLV +D++V+ Sbjct: 840 -VKSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVR 891
>RPOC_MYCS5 (Q4A5S8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1492 Score = 58.2 bits (139), Expect = 8e-09 Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 1/112 (0%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV-DRTLPHFTKDDYGPESRGF 189 N L M+++G++G++ N +Q+ G N K + DR + + Sbjct: 925 NPLFMMLSSGARGTYSNFTQLAGMRGLMNNNTKILKADAENDRVVRSIVEIP-------- 976 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 V++S+L GLT EF+ G R+GL DTA+ T+++GY+ RRLV+ + ++++ Sbjct: 977 VKSSFLDGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVEVAQGVVIR 1028
>RPOC_OCEIH (Q8ETY7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/117 (29%), Positives = 57/117 (48%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 LS N + M +G++G+ N +Q+ G D G Sbjct: 720 LSNRNPIFMMSDSGARGNASNFTQLAGMRG--------------------LMADPAGKII 759 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++++ D Sbjct: 760 EIPIKSSFREGLTVMEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIIRED 816
>RPOC_BACSU (P37871) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 57.4 bits (137), Expect = 1e-08 Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L E N + M +G++G+ N +Q+ G N G+ I LP Sbjct: 720 LDELNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIE-------LP---------- 762 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++++ Sbjct: 763 ----IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIIR 814
>RPOC_STRP3 (Q8K8W2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 57.4 bits (137), Expect = 1e-08 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 725 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVRN 366 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D GT R Sbjct: 765 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRG 824 Query: 367 SL 372 L Sbjct: 825 LL 826
>RPOC_STRR6 (Q8DNF1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 57.4 bits (137), Expect = 1e-08 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 724 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 763 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVRN 366 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D GT R Sbjct: 764 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRG 823 Query: 367 SL 372 L Sbjct: 824 LL 825
>RPOC_STRPN (Q97NQ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 57.4 bits (137), Expect = 1e-08 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 724 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 763 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVRN 366 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D GT R Sbjct: 764 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRG 823 Query: 367 SL 372 L Sbjct: 824 LL 825
>RPOC_STRPM (Q48VR0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 57.4 bits (137), Expect = 1e-08 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 725 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVRN 366 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D GT R Sbjct: 765 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRG 824 Query: 367 SL 372 L Sbjct: 825 LL 826
>RPOC_STRP8 (Q8P2Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 57.4 bits (137), Expect = 1e-08 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 725 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVRN 366 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D GT R Sbjct: 765 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRG 824 Query: 367 SL 372 L Sbjct: 825 LL 826
>RPOC_STRP6 (Q5XE96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 57.4 bits (137), Expect = 1e-08 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 725 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVRN 366 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D GT R Sbjct: 765 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRG 824 Query: 367 SL 372 L Sbjct: 825 LL 826
>RPOC_STRP1 (P0C0E0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 57.4 bits (137), Expect = 1e-08 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 725 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVRN 366 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D GT R Sbjct: 765 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRG 824 Query: 367 SL 372 L Sbjct: 825 LL 826
>RPOC_GEOKA (Q5L404) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 57.0 bits (136), Expect = 2e-08 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 3/127 (2%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L + N + M +G++G+ N +Q+ G N G+ I LP Sbjct: 720 LDKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIE-------LP---------- 762 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD-- 351 +++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + Sbjct: 763 ----IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDC 818 Query: 352 GTVRNSL 372 GT R L Sbjct: 819 GTDRGIL 825
>RPOC_PORCN (O33431) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1159 Score = 57.0 bits (136), Expect = 2e-08 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 6/130 (4%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M+ +G++GS I+Q++ G K G E R + Sbjct: 641 NSIFMMMDSGARGSKDQINQLSGIRGLMAKPQKS------------------GTEGRTLL 682 Query: 193 ENSYL----RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 EN L GL+ E+F G R+GL DTA+KT+E GY+ RRLV +D++V + G Sbjct: 683 ENPILSNFKEGLSVLEYFISTHGARKGLSDTALKTAECGYLTRRLVDVSQDVIVTEEDCG 742 Query: 355 TVRNSLGDVI 384 T+R + + I Sbjct: 743 TLRGLVTEEI 752
>RPOC_STRT2 (Q5M2F6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 56.6 bits (135), Expect = 2e-08 Identities = 33/113 (29%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 725 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D Sbjct: 765 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRED 817
>RPOC_STRT1 (Q5LXV4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 56.6 bits (135), Expect = 2e-08 Identities = 33/113 (29%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 725 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D Sbjct: 765 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRED 817
>RPOC_STRMU (Q8DS47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1209 Score = 56.6 bits (135), Expect = 2e-08 Identities = 33/113 (29%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 725 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D Sbjct: 765 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRED 817
>RPOC_STRA5 (Q8E238) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 56.6 bits (135), Expect = 2e-08 Identities = 33/113 (29%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 725 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D Sbjct: 765 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRED 817
>RPOC_STRA3 (Q8E7J7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 56.6 bits (135), Expect = 2e-08 Identities = 33/113 (29%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 725 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D Sbjct: 765 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRED 817
>RPOC_STRA1 (Q3K3L1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 56.6 bits (135), Expect = 2e-08 Identities = 33/113 (29%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M+ +G++G+ N SQ+ G RI LP + Sbjct: 725 NPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D Sbjct: 765 LSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRED 817
>RPOC_STAAU (P47770) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1140 Score = 56.2 bits (134), Expect = 3e-08 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L ++N + M +G++G+ N +Q+ G +I LP Sbjct: 724 LDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKII------ELP----------- 766 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 + +S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + G Sbjct: 767 ---ITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCG 823 Query: 355 TVRNSL 372 T R L Sbjct: 824 TDRGLL 829
>RPOC_STAES (Q8CQ83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 56.2 bits (134), Expect = 3e-08 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L ++N + M +G++G+ N +Q+ G +I LP Sbjct: 724 LEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKII------ELP----------- 766 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 + +S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + G Sbjct: 767 ---ITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCG 823 Query: 355 TVRNSL 372 T R L Sbjct: 824 TDRGLL 829
>RPOC_STAEQ (Q5HRK9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 56.2 bits (134), Expect = 3e-08 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L ++N + M +G++G+ N +Q+ G +I LP Sbjct: 724 LEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKII------ELP----------- 766 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 + +S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + G Sbjct: 767 ---ITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCG 823 Query: 355 TVRNSL 372 T R L Sbjct: 824 TDRGLL 829
>RPOC_STAAW (P60286) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 56.2 bits (134), Expect = 3e-08 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L ++N + M +G++G+ N +Q+ G +I LP Sbjct: 724 LDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKII------ELP----------- 766 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 + +S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + G Sbjct: 767 ---ITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCG 823 Query: 355 TVRNSL 372 T R L Sbjct: 824 TDRGLL 829
>RPOC_STAAS (Q6GBU4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 56.2 bits (134), Expect = 3e-08 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L ++N + M +G++G+ N +Q+ G +I LP Sbjct: 724 LDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKII------ELP----------- 766 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 + +S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + G Sbjct: 767 ---ITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCG 823 Query: 355 TVRNSL 372 T R L Sbjct: 824 TDRGLL 829
>RPOC_STAAR (Q6GJC5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 56.2 bits (134), Expect = 3e-08 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L ++N + M +G++G+ N +Q+ G +I LP Sbjct: 724 LDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKII------ELP----------- 766 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 + +S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + G Sbjct: 767 ---ITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCG 823 Query: 355 TVRNSL 372 T R L Sbjct: 824 TDRGLL 829
>RPOC_STAAN (P60285) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 56.2 bits (134), Expect = 3e-08 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L ++N + M +G++G+ N +Q+ G +I LP Sbjct: 724 LDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKII------ELP----------- 766 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 + +S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + G Sbjct: 767 ---ITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCG 823 Query: 355 TVRNSL 372 T R L Sbjct: 824 TDRGLL 829
>RPOC_STAAM (P60284) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 56.2 bits (134), Expect = 3e-08 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L ++N + M +G++G+ N +Q+ G +I LP Sbjct: 724 LDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKII------ELP----------- 766 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 + +S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + G Sbjct: 767 ---ITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCG 823 Query: 355 TVRNSL 372 T R L Sbjct: 824 TDRGLL 829
>RPOC_STAAC (Q5HID2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 56.2 bits (134), Expect = 3e-08 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L ++N + M +G++G+ N +Q+ G +I LP Sbjct: 724 LDKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKII------ELP----------- 766 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 + +S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + G Sbjct: 767 ---ITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCG 823 Query: 355 TVRNSL 372 T R L Sbjct: 824 TDRGLL 829
>RPOC_STAHJ (Q4L3K4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 56.2 bits (134), Expect = 3e-08 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L ++N + M +G++G+ N +Q+ G +I LP Sbjct: 724 LEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKII------ELP----------- 766 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 + +S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + G Sbjct: 767 ---ITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCG 823 Query: 355 TVRNSL 372 T R L Sbjct: 824 TDRGLL 829
>RPOC2_SYNPX (Q7U8K2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1364 Score = 56.2 bits (134), Expect = 3e-08 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 N++ M +G++G+ + Q+ G N +G+ I LP Sbjct: 156 NSVWMMANSGARGNMSQVRQLVGMRGLMANPQGEIID-------LP-------------- 194 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 + ++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++V+ D GT R Sbjct: 195 IRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREDDCGTTR 254 Query: 364 N 366 + Sbjct: 255 H 255
>RPOC_WEIHE (P96177) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1046 Score = 56.2 bits (134), Expect = 3e-08 Identities = 36/137 (26%), Positives = 67/137 (48%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 NN+ M +G++G+ N +Q+ G RI LP + Sbjct: 658 NNIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRI------MELP--------------I 697 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 372 ++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D + Sbjct: 698 IANFREGLSVLEMFFSTHGARKGMTDTALKTADSGYMTRRLVDVAQDVIIREDDCGSDRG 757 Query: 373 GDVI*FLYGEDGMDAVW 423 DV + G + +++++ Sbjct: 758 LDVSAIMNGNEVIESLY 774
>RPOC2_EUGGR (P23581) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 830 Score = 55.8 bits (133), Expect = 4e-08 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 N L +M +G++GS + Q+ G + +G IPF Sbjct: 125 NPLYSMTLSGARGSITQVKQLIGMRGLMSDSQGNVIPFP--------------------- 163 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++ ++ GL E+F G R+GLIDTA+KT+ GY+ RR++ ++++VK Sbjct: 164 IKTNFKEGLNITEYFVSCYGARKGLIDTALKTANAGYLTRRMIYTAQNLIVK 215
>RPOC_LACLA (Q9CEN7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 55.8 bits (133), Expect = 4e-08 Identities = 32/114 (28%), Positives = 58/114 (50%) Frame = +1 Query: 10 SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 +N + M+ +G++G+ N SQ+ G +I LP Sbjct: 723 TNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGKI------MELP-------------- 762 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 + +++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ D Sbjct: 763 IISNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRED 816
>RPOC_BACSK (Q5WLR9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 55.8 bits (133), Expect = 4e-08 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L N + M +G++G+ N +Q+ G N G+ I LP Sbjct: 720 LDARNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIE-------LP---------- 762 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ Sbjct: 763 ----IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVR 814
>RPOC2_PROMM (Q7V5P3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1374 Score = 55.8 bits (133), Expect = 4e-08 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 N++ M +G++G+ + Q+ G N +G+ I LP Sbjct: 164 NSVWMMANSGARGNMSQVRQLVGMRGLMANPQGEIID-------LP-------------- 202 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 + ++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++V+ D GT R Sbjct: 203 IRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREDDCGTTR 262
>RPOC2_PROMT (Q46J24) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1369 Score = 55.5 bits (132), Expect = 5e-08 Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 N++ M +G++G+ + Q+ G N +G+ I LP Sbjct: 159 NSVWMMANSGARGNMSQVRQLVGMRGLMANPQGEIID-------LP-------------- 197 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 + ++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++V+ + GT R Sbjct: 198 IRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREEDCGTTR 257 Query: 364 NSL 372 + L Sbjct: 258 SIL 260
>RPOC_SYMTH (Q67JT4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1179 Score = 55.5 bits (132), Expect = 5e-08 Identities = 36/117 (30%), Positives = 63/117 (53%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 + + N + M+ +G++G NISQ+T G + + P G + LP Sbjct: 698 MEDFNPVNMMMKSGARG---NISQITQLAGMRGLMAD--PSGKIVE-LP----------- 740 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 V+ ++ GLT E+F G R+GL DT+++T+++GY+ RRLV +D++V+ D Sbjct: 741 ---VKANFREGLTVLEYFLSTHGTRKGLADTSLRTADSGYLTRRLVDVAQDVIVRED 794
>RPOC_STAS1 (Q49V53) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 55.5 bits (132), Expect = 5e-08 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 2/126 (1%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L ++N + M +G++G+ N +Q+ G I LP Sbjct: 724 LEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGEII------ELP----------- 766 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 + +S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ + G Sbjct: 767 ---ITSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCG 823 Query: 355 TVRNSL 372 T R L Sbjct: 824 TDRGLL 829
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 55.1 bits (131), Expect = 7e-08 Identities = 23/52 (44%), Positives = 39/52 (75%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 V++S+ GLT E+F + G R+GL DTA++T+++GY+ RRLV +D++V+ Sbjct: 836 VKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 887
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 55.1 bits (131), Expect = 7e-08 Identities = 23/52 (44%), Positives = 39/52 (75%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 V++S+ GLT E+F + G R+GL DTA++T+++GY+ RRLV +D++V+ Sbjct: 836 VKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 887
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 55.1 bits (131), Expect = 7e-08 Identities = 23/52 (44%), Positives = 39/52 (75%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 V++S+ GLT E+F + G R+GL DTA++T+++GY+ RRLV +D++V+ Sbjct: 836 VKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 887
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 55.1 bits (131), Expect = 7e-08 Identities = 23/52 (44%), Positives = 39/52 (75%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 V++S+ GLT E+F + G R+GL DTA++T+++GY+ RRLV +D++V+ Sbjct: 836 VKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 887
>RPOC2_EMIHU (Q4G3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1267 Score = 55.1 bits (131), Expect = 7e-08 Identities = 36/111 (32%), Positives = 61/111 (54%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N L M +G++G NISQ+ VG + + P G + LP + Sbjct: 128 NPLYIMAFSGARG---NISQVRQLVGMRGLMSN--PQGQII-DLP--------------I 167 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +DI+V+ Sbjct: 168 KSNFREGLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVAQDIIVR 218
>RPOC_MYCMS (Q6MRX5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1255 Score = 55.1 bits (131), Expect = 7e-08 Identities = 32/110 (29%), Positives = 54/110 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + MV +G++G+ N +Q+ G N D G + Sbjct: 781 NPIFVMVDSGARGNISNFTQLVGMRGLMN--------------------DTKGDIKEIPI 820 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 ++S+ GLT E+F G R+G+ D A+KT+++GY+ RRLV ++I+V Sbjct: 821 KSSFREGLTVSEYFVSTHGARKGMADIALKTADSGYLTRRLVDVSQEIVV 870
>RPOC_LISGR (P77882) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1053 Score = 55.1 bits (131), Expect = 7e-08 Identities = 34/117 (29%), Positives = 57/117 (48%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L N + M +G++G+ N +Q+ G RI LP Sbjct: 720 LERLNPIFMMQDSGARGNISNFTQLAGMRGLMADPSGRIV------ELP----------- 762 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 + +++ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++++ D Sbjct: 763 ---ITSNFREGLTVLEYFISTHGARKGLTDTALKTADSGYLTRRLVDVAQDVIIRED 816
>RPOC_LISMO (Q8YA96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 55.1 bits (131), Expect = 7e-08 Identities = 34/117 (29%), Positives = 57/117 (48%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L N + M +G++G+ N +Q+ G RI LP Sbjct: 720 LDRLNPIFMMQDSGARGNISNFTQLAGMRGLMADPSGRIV------ELP----------- 762 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 + +++ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++++ D Sbjct: 763 ---ITSNFREGLTVLEYFISTHGARKGLTDTALKTADSGYLTRRLVDVAQDVIIRED 816
>RPOC_LISMF (Q724E9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 55.1 bits (131), Expect = 7e-08 Identities = 34/117 (29%), Positives = 57/117 (48%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L N + M +G++G+ N +Q+ G RI LP Sbjct: 720 LDRLNPIFMMQDSGARGNISNFTQLAGMRGLMADPSGRIV------ELP----------- 762 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 + +++ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++++ D Sbjct: 763 ---ITSNFREGLTVLEYFISTHGARKGLTDTALKTADSGYLTRRLVDVAQDVIIRED 816
>RPOC_LISIN (P77879) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 55.1 bits (131), Expect = 7e-08 Identities = 34/117 (29%), Positives = 57/117 (48%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L N + M +G++G+ N +Q+ G RI LP Sbjct: 720 LDRLNPIFMMQDSGARGNISNFTQLAGMRGLMADPSGRIV------ELP----------- 762 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 + +++ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++++ D Sbjct: 763 ---ITSNFREGLTVLEYFISTHGARKGLTDTALKTADSGYLTRRLVDVAQDVIIRED 816
>RPOC_MYCGA (P47716) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 55.1 bits (131), Expect = 7e-08 Identities = 33/126 (26%), Positives = 67/126 (53%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 186 + N++ + +G++G NIS T G + + K + + + +D Sbjct: 798 KENSIVVIADSGARG---NISNFTQLFGMRGLMSKS--YNYDQKIKSQVIRDTIEVP--- 849 Query: 187 FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 366 +++S++ GLT E+F + G R+G+ D A+KTS++GY+ R+LV A +++++ D Sbjct: 850 -IKHSFIEGLTINEYFNSSYGARKGMTDIAMKTSKSGYMTRKLVDAAQEVIIN-DSDCNT 907 Query: 367 SLGDVI 384 + G V+ Sbjct: 908 NKGIVV 913
>RPOC_FUSNN (Q8RHI7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1319 Score = 54.7 bits (130), Expect = 9e-08 Identities = 35/114 (30%), Positives = 56/114 (49%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L E N + M T+G++G N+SQM G + D G Sbjct: 675 LDEFNPVYMMATSGARG---NVSQMRQLAGMRGNMA-----------------DTQGRTI 714 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 ++ ++ GLT EFF + G R+GL DTA++T+++GY+ RRLV +++V Sbjct: 715 EVPIKANFREGLTVLEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIV 768
>RPOC_NOCFA (Q5YPE1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 54.7 bits (130), Expect = 9e-08 Identities = 22/52 (42%), Positives = 39/52 (75%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +++S+ GLT E+F + G R+GL DTA++T+++GY+ RRLV +D++V+ Sbjct: 835 IKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 886
>RPOC_DEHSC (Q3ZX00) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 54.3 bits (129), Expect = 1e-07 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Frame = +1 Query: 28 MVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 204 M +G+KG+ I QM G N G+ I F +++S Sbjct: 752 MANSGAKGNISQIRQMAGLRGLMTNPSGRIIDFP---------------------IKSSL 790 Query: 205 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 GLT E+F G R+GL DTA++TS +GY+ RRL+ +D+++ Sbjct: 791 REGLTALEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVII 836
>RPOC_DEHE1 (Q3Z8V3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 54.3 bits (129), Expect = 1e-07 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Frame = +1 Query: 28 MVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 204 M +G+KG+ I QM G N G+ I F +++S Sbjct: 752 MANSGAKGNISQIRQMAGLRGLMTNPSGRIIDFP---------------------IKSSL 790 Query: 205 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 GLT E+F G R+GL DTA++TS +GY+ RRL+ +D+++ Sbjct: 791 REGLTTLEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVII 836
>RPOC_STRCO (Q8CJT1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 54.3 bits (129), Expect = 1e-07 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQ-QNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 ++N + MV +G++G+ + + Q+ G N + + IP Sbjct: 790 KTNPVSMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRP------------------- 830 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GT 357 ++ S+ GL+ E+F G R+GL DTA++T+++GY+ RRLV +D++++ + GT Sbjct: 831 --IKASFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGT 888 Query: 358 VR 363 R Sbjct: 889 ER 890
>RPOC2_PROMA (Q7VA30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1367 Score = 54.3 bits (129), Expect = 1e-07 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 N++ M +G++G+ + Q+ G N +G+ I LP Sbjct: 156 NSVWMMANSGARGNMSQVRQLVGMRGLMANPQGEIID-------LP-------------- 194 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 + ++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++V+ + GT R Sbjct: 195 IRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREEDCGTTR 254
>RPOC_STRPY (P0C0D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 989 Score = 54.3 bits (129), Expect = 1e-07 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N M+ +G++G+ N SQ+ G RI LP + Sbjct: 658 NPFVMMMDSGARGNISNFSQLAGMRGLMAAPNGRI------MELP--------------I 697 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVRN 366 +++ GL+ E FF R+G+ DTA+KT+++GY+ RRLV +D++++ D GT R Sbjct: 698 LSNFREGLSVLEMFFSTHSARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRG 757 Query: 367 SL 372 L Sbjct: 758 LL 759
>RPOC_DESVH (Q727C6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1385 Score = 53.9 bits (128), Expect = 2e-07 Identities = 35/113 (30%), Positives = 58/113 (51%) Frame = +1 Query: 4 SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 S N++ M T+G++G N QM G + + K P G + T Sbjct: 712 SSFNSIYMMSTSGARG---NQDQMRQLAGMRGLMAK--PSGEIIETP------------- 753 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 + +S+ GL+ ++F G R+GL DTA+KT+ +GY+ RRLV ++D++V Sbjct: 754 --ITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGYLTRRLVDVVQDVIV 804
>RPOC_WEIPA (P96178) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1054 Score = 53.9 bits (128), Expect = 2e-07 Identities = 32/111 (28%), Positives = 55/111 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 NN+ M +G++G+ N +Q+ G RI LP + Sbjct: 658 NNIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRI------MELP--------------I 697 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++ GL+ E FF G R+G+ DTA+KT+++GY+ RRLV +D++++ Sbjct: 698 IANFREGLSVLEMFFSTHGARKGMTDTALKTADSGYMTRRLVDVAQDVIIR 748
>RPOC_TREDE (Q73JJ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1424 Score = 53.9 bits (128), Expect = 2e-07 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M T+G++GS I+Q+ G + + K P G + LP + Sbjct: 689 NTIHMMETSGARGSKDQINQLA---GMRGLMSK--PTGDIIE-LP--------------I 728 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTV 360 +++ GL EFF G R+GL DTA+KTS+ GY+ RRLV ++++V + GT+ Sbjct: 729 RSNFKEGLNVMEFFISTNGARKGLTDTALKTSDAGYLTRRLVDIAQNVVVNEEDCGTI 786
>RPOC2_GRATL (Q6B8R6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1228 Score = 53.9 bits (128), Expect = 2e-07 Identities = 32/114 (28%), Positives = 61/114 (53%) Frame = +1 Query: 4 SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 +E + L ++ G+ NISQ+ VG + + P G + LP Sbjct: 122 TEKDPLNSIYMMAFSGARANISQVRQLVGMRGLMAD--PQGQII-DLP------------ 166 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 + +++ GLT ++F + G R+GL+DTA++T+++GY+ RRLV +D++++ Sbjct: 167 --ISSNFREGLTITDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIR 218
>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 53.9 bits (128), Expect = 2e-07 Identities = 22/54 (40%), Positives = 40/54 (74%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 ++ S+ GLT E+F ++ G R+GL DTA++T+++GY+ RRLV +D++V+ + Sbjct: 846 IKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVE 899
>RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 53.9 bits (128), Expect = 2e-07 Identities = 22/54 (40%), Positives = 40/54 (74%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 ++ S+ GLT E+F ++ G R+GL DTA++T+++GY+ RRLV +D++V+ + Sbjct: 846 IKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVE 899
>RPOC2_PROMP (Q7V008) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1366 Score = 53.9 bits (128), Expect = 2e-07 Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 N++ M +G++G+ + Q+ G N +G+ I LP Sbjct: 154 NSVWMMANSGARGNMSQVRQLVGMRGLMANPQGEIID-------LP-------------- 192 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 + ++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++V+ + GT R Sbjct: 193 IRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREEDCGTER 252 Query: 364 N 366 + Sbjct: 253 S 253
>RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1323 Score = 53.5 bits (127), Expect = 2e-07 Identities = 22/54 (40%), Positives = 40/54 (74%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 ++ S+ GL+ E+F ++ G R+GL DTA++T+++GY+ RRLV +D++V+ D Sbjct: 839 IKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED 892
>RPOC_CARHZ (Q3A9Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1152 Score = 53.5 bits (127), Expect = 2e-07 Identities = 34/114 (29%), Positives = 59/114 (51%) Frame = +1 Query: 4 SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 S+ N++ M +G++G+ I Q+ G RI +D LP Sbjct: 682 SQFNHVYMMAKSGARGNIQQIRQLAGMRGLMADPSGRI----ID--LP------------ 723 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++ ++ GLT E+F G R+GL DTA++T+++GY+ RRLV +D++V+ Sbjct: 724 --IKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVCQDVIVR 775
>RPOC2_ANASP (P22705) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1355 Score = 53.5 bits (127), Expect = 2e-07 Identities = 33/111 (29%), Positives = 61/111 (54%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++G NISQ+ VG + + P G + LP + Sbjct: 125 NSVYMMAFSGARG---NISQVRQLVGMRGLMAD--PQGEII-DLP--------------I 164 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 + ++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++++ Sbjct: 165 KTNFREGLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIR 215
>RPOC_CORDI (Q6NJF6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1336 Score = 53.5 bits (127), Expect = 2e-07 Identities = 22/54 (40%), Positives = 40/54 (74%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 ++ S+ GL+ E+F ++ G R+GL DTA++T+++GY+ RRLV +D++V+ D Sbjct: 847 IKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED 900
>RPOC_MYCMO (Q6KI08) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1424 Score = 53.5 bits (127), Expect = 2e-07 Identities = 33/116 (28%), Positives = 59/116 (50%) Frame = +1 Query: 4 SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 ++ N++ M+ +G++G+ N Q+ G K + + + T + Sbjct: 912 NKENSIFMMMQSGARGNISNYVQLAGMRGLMANNVKTLKADAQNERVVRSTVEVP----- 966 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 V++S+L GLT EF+ G R+GL D A+ T+ +GY+ RRLV ++I+V D Sbjct: 967 --VKSSFLDGLTAYEFYSSTHGARKGLTDVALNTARSGYLTRRLVDVAQNIVVSED 1020
>RPOC2_GUITH (O78483) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1286 Score = 53.5 bits (127), Expect = 2e-07 Identities = 34/111 (30%), Positives = 61/111 (54%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M +G++G NISQ+ VG + + P G + LP + Sbjct: 131 NPIYIMAFSGARG---NISQVRQLVGMRGLMAD--PQGQII-DLP--------------I 170 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +DI+++ Sbjct: 171 KSNFREGLTVTEYLISSYGARKGLVDTALRTADSGYLTRRLVDVAQDIIIR 221
>RPOC2_SYNP6 (Q5MZ21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1318 Score = 53.1 bits (126), Expect = 3e-07 Identities = 33/110 (30%), Positives = 60/110 (54%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++G NISQ+ VG + + P G + LP + Sbjct: 127 NSVYMMAFSGARG---NISQVRQLVGMRGLMAN--PQGEII-DLP--------------I 166 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 + ++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D+++ Sbjct: 167 KTNFREGLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVII 216
>RPOC_NEIMB (Q9K1J1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 53.1 bits (126), Expect = 3e-07 Identities = 34/113 (30%), Positives = 58/113 (51%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q++ G + + K P G + T + Sbjct: 722 NSIYMMADSGARGSAAQIKQLS---GMRGLMAK--PDGSIIETP---------------I 761 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++ GLT ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 762 TSNFREGLTVLQYFIATHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVED 814
>RPOC_NEIMA (Q9JX03) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 53.1 bits (126), Expect = 3e-07 Identities = 34/113 (30%), Positives = 58/113 (51%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q++ G + + K P G + T + Sbjct: 722 NSIYMMADSGARGSAAQIKQLS---GMRGLMAK--PDGSIIETP---------------I 761 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++ GLT ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 762 TSNFREGLTVLQYFIATHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVED 814
>RPOC_NEIG1 (Q5F5R6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 53.1 bits (126), Expect = 3e-07 Identities = 34/113 (30%), Positives = 58/113 (51%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q++ G + + K P G + T + Sbjct: 722 NSIYMMADSGARGSAAQIKQLS---GMRGLMAK--PDGSIIETP---------------I 761 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++ GLT ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 762 TSNFREGLTVLQYFIATHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVED 814
>RPOC_TREPA (O83270) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 53.1 bits (126), Expect = 3e-07 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M T+G++GS I Q+ G + + K P G + LP + Sbjct: 687 NTIYMMATSGARGSRNQIRQLA---GMRGLMAK--PSGDIIE-LP--------------I 726 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTV 360 +++ GL EFF G R+GL DTA+KT++ GY+ RRLV +D++V + GT+ Sbjct: 727 RSNFKEGLNVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVNEEDCGTI 784
>RPOC_STRAW (Q82DQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 53.1 bits (126), Expect = 3e-07 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQ-QNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 ++N + MV +G++G+ + + Q+ G N + + IP Sbjct: 790 KTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRP------------------- 830 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GT 357 ++ S+ GL+ E+F G R+GL DTA++T+++GY+ RRLV +D++++ + GT Sbjct: 831 --IKASFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGT 888 Query: 358 VR 363 R Sbjct: 889 ER 890
>RPOC_EHRRW (Q5HC04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 53.1 bits (126), Expect = 3e-07 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Frame = +1 Query: 4 SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 S+ N++ M +G++GS SQM G + + K P G + T Sbjct: 712 SKLNSIYMMAHSGARGS---ASQMKQLAGMRGLMAK--PSGEIIETP------------- 753 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED-IMVKYDGTV 360 + +++ GL E+F G R+GL DTA+KT+ +GY+ RRLV +D I+V+YD Sbjct: 754 --IISNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVVEYDCKT 811 Query: 361 RN 366 N Sbjct: 812 HN 813
>RPOC_EHRRG (Q5FFD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 53.1 bits (126), Expect = 3e-07 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Frame = +1 Query: 4 SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 S+ N++ M +G++GS SQM G + + K P G + T Sbjct: 712 SKLNSIYMMAHSGARGS---ASQMKQLAGMRGLMAK--PSGEIIETP------------- 753 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED-IMVKYDGTV 360 + +++ GL E+F G R+GL DTA+KT+ +GY+ RRLV +D I+V+YD Sbjct: 754 --IISNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVVEYDCKT 811 Query: 361 RN 366 N Sbjct: 812 HN 813
>RPOC2_SYNEL (Q8DL57) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1324 Score = 53.1 bits (126), Expect = 3e-07 Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 1/112 (0%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 N++ M +G++G+ + Q+ G N +G+ I LP Sbjct: 125 NSVYMMAFSGARGNLSQVRQLVGMRGLMANPQGEIID-------LP-------------- 163 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++ ++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++++ Sbjct: 164 IKTNFREGLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIR 215
>RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 53.1 bits (126), Expect = 3e-07 Identities = 38/116 (32%), Positives = 57/116 (49%) Frame = +1 Query: 4 SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 S NN+ M +G++GS I Q+ G + + K P G + T P + Sbjct: 717 SSFNNIFMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITA 761 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 F E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 762 NFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_PORGI (Q7MX26) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1433 Score = 52.8 bits (125), Expect = 3e-07 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M+ +G++GS I Q++ G K G E + Sbjct: 715 NSVFMMMDSGARGSKEQIRQLSGMRGLMAKPQKS------------------GAEGGQII 756 Query: 193 ENSYL----RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 EN L GL+ E+F G R+GL DTA+KT++ GY+ RRLV D+++ + G Sbjct: 757 ENPILSNFKEGLSVLEYFISTHGARKGLADTALKTADAGYLTRRLVDVSHDVIITEEDCG 816 Query: 355 TVRNSL 372 T+R L Sbjct: 817 TLRGLL 822
>RPOC_UREPA (Q9PQV5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1305 Score = 52.8 bits (125), Expect = 3e-07 Identities = 30/116 (25%), Positives = 65/116 (56%), Gaps = 3/116 (2%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 186 + N + M +G++G+ N +Q+ G R G + ++ + K++ G Sbjct: 815 KDNPIVIMAKSGARGNTSNFTQLA---------GMR---GLMSKSYNYDQKNNNGVIKDT 862 Query: 187 F---VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +++S++ GL+ E+F + G R+G+ DTA+KT+++GY+ R+LV + + +++K Sbjct: 863 IEIPIKHSFIEGLSVSEYFNSSFGARKGMTDTAMKTAKSGYMTRKLVDSTQAVVIK 918
>RPOC_LEPIN (Q8F0S3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 52.8 bits (125), Expect = 3e-07 Identities = 22/54 (40%), Positives = 36/54 (66%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 + +++ GL+ EFF G R+GL DTA+KT++ GY+ RRLV +D+++ D Sbjct: 723 IRSNFREGLSVLEFFISTHGARKGLADTALKTADAGYLTRRLVDISQDVIISED 776
>RPOC_LEPIC (Q72UA7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 52.8 bits (125), Expect = 3e-07 Identities = 22/54 (40%), Positives = 36/54 (66%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 + +++ GL+ EFF G R+GL DTA+KT++ GY+ RRLV +D+++ D Sbjct: 723 IRSNFREGLSVLEFFISTHGARKGLADTALKTADAGYLTRRLVDISQDVIISED 776
>RPOC_BACFR (Q64NJ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1427 Score = 52.8 bits (125), Expect = 3e-07 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M+ +G++GS I Q++ G K G E + Sbjct: 715 NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKA------------------GAEGGQII 756 Query: 193 ENSYL----RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 EN L GL+ E+F G R+GL DTA+KT++ GY+ RRLV D+++ + G Sbjct: 757 ENPILSNFKEGLSVLEYFISTHGARKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCG 816 Query: 355 TVR 363 T+R Sbjct: 817 TLR 819
>RPOC_BACFN (Q5L898) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1427 Score = 52.8 bits (125), Expect = 3e-07 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M+ +G++GS I Q++ G K G E + Sbjct: 715 NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKA------------------GAEGGQII 756 Query: 193 ENSYL----RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 EN L GL+ E+F G R+GL DTA+KT++ GY+ RRLV D+++ + G Sbjct: 757 ENPILSNFKEGLSVLEYFISTHGARKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCG 816 Query: 355 TVR 363 T+R Sbjct: 817 TLR 819
>RPOC2_PORPU (P51250) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 52.8 bits (125), Expect = 3e-07 Identities = 33/111 (29%), Positives = 61/111 (54%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++G NISQ+ VG + + P G + LP + Sbjct: 129 NSVYMMAFSGARG---NISQVRQLVGMRGLMAD--PQGQII-DLP--------------I 168 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++ GLT ++F + G R+GL+DTA++T+++GY+ RRLV +D++++ Sbjct: 169 SSNSREGLTVTDYFISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIR 219
>RPOBC_WOLTR (Q5GRY9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2839 Score = 52.8 bits (125), Expect = 3e-07 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Frame = +1 Query: 4 SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 S+ N++ MV +G++GS SQM G + + K P G + T Sbjct: 2141 SKYNSVYMMVNSGARGS---TSQMKQLAGMRGLMTK--PSGEIIETP------------- 2182 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED-IMVKYDGTV 360 + +++ GL E+F G R+GL DTA+KT+ +GY+ RRLV ++ I+ K+D Sbjct: 2183 --IISNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVSQNCIVTKHDCKT 2240 Query: 361 RNSL 372 +N L Sbjct: 2241 KNGL 2244
>RPOBC_WOLPM (Q73IW9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2837 Score = 52.8 bits (125), Expect = 3e-07 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Frame = +1 Query: 4 SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 183 S+ N++ MV +G++GS SQM G + + K P G + T Sbjct: 2138 SKYNSVYMMVNSGARGS---TSQMKQLAGMRGLMTK--PSGEIIETP------------- 2179 Query: 184 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED-IMVKYDGTV 360 + +++ GL E+F G R+GL DTA+KT+ +GY+ RRLV ++ I+ K+D Sbjct: 2180 --IISNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVSQNCIVAKHDCKT 2237 Query: 361 RNSL 372 +N L Sbjct: 2238 KNGL 2241
>RPOC_COLP3 (Q47UW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 52.4 bits (124), Expect = 4e-07 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 9/133 (6%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T + Sbjct: 720 NSIFMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIETP---------------I 759 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV------KYDG 354 + ++ GLT ++F G R+GL DTA+KT+ +GY+ RRLV +D++V +DG Sbjct: 760 KANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTNHDCGTHDG 819 Query: 355 TVRNSL---GDVI 384 + L GDV+ Sbjct: 820 LLMTPLIEGGDVV 832
>RPOC_BLOPB (Q492C0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 52.4 bits (124), Expect = 4e-07 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 NN+ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 721 NNIFMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 765 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ D Sbjct: 766 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITQD 813
>RPOC2_SYNY3 (P73334) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 52.4 bits (124), Expect = 4e-07 Identities = 20/52 (38%), Positives = 38/52 (73%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++ ++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++V+ Sbjct: 159 IKTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVR 210
>RPOC_CHRVO (Q7NQE7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 52.4 bits (124), Expect = 4e-07 Identities = 37/113 (32%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIKQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GLT ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVIED 812
>RPOC_BLOFL (Q7VRP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 52.4 bits (124), Expect = 4e-07 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 NN+ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 722 NNIFMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 766 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ D Sbjct: 767 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITQD 814
>RPOC_BROTH (P77839) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1053 Score = 52.4 bits (124), Expect = 4e-07 Identities = 33/115 (28%), Positives = 56/115 (48%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 180 L N + M +G++G+ N +Q+ G RI LP Sbjct: 720 LDRLNPIFMMQDSGARGNISNFTQLAGMRGLMADPSGRIV------ELP----------- 762 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 + +++ GL E+F + G R+GL DTA+KT+++GY+ RRLV +D++V+ Sbjct: 763 ---ITSNFREGLNVLEYFISSHGARKGLTDTALKTADSGYLTRRLVDVAQDVIVR 814
>RPOC2_ODOSI (P49468) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1481 Score = 52.4 bits (124), Expect = 4e-07 Identities = 30/111 (27%), Positives = 57/111 (51%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++G N+SQ+ VG + + D G + + Sbjct: 123 NSVYIMAFSGARG---NLSQVRQLVGMRGL-----------------MSDPSGELLKLPI 162 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 + ++ GLT ++ G R+G+IDTA+KT+ +GY+ RRL+ +DI+++ Sbjct: 163 KKNFREGLTITDYLMSGYGARKGIIDTALKTANSGYLTRRLIDVAQDIIIR 213
>RPOC_BURS3 (Q39KH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 52.0 bits (123), Expect = 6e-07 Identities = 36/113 (31%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS + I Q+ G + + K P G + T P + F Sbjct: 725 NSIYMMADSGARGSAVQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 769 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 770 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVED 817
>RPOC_METCA (Q60A05) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 52.0 bits (123), Expect = 6e-07 Identities = 36/113 (31%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIFMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GLT ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ D Sbjct: 765 E-----GLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITED 812
>RPOC_BURPS (Q63Q04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 52.0 bits (123), Expect = 6e-07 Identities = 36/113 (31%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS + I Q+ G + + K P G + T P + F Sbjct: 725 NSIYMMADSGARGSAVQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 769 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 770 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVED 817
>RPOC_BURP1 (Q3JMQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 52.0 bits (123), Expect = 6e-07 Identities = 36/113 (31%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS + I Q+ G + + K P G + T P + F Sbjct: 725 NSIYMMADSGARGSAVQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 769 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 770 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVED 817
>RPOC_BURMA (Q62GJ7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 52.0 bits (123), Expect = 6e-07 Identities = 36/113 (31%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS + I Q+ G + + K P G + T P + F Sbjct: 725 NSIYMMADSGARGSAVQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 769 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 770 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVED 817
>RPOC_MYCPU (Q98Q24) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1426 Score = 51.6 bits (122), Expect = 8e-07 Identities = 24/51 (47%), Positives = 36/51 (70%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 V++S+L GLT EF+ G R+GL DTA+ T+++GY+ RRLV + I+V Sbjct: 954 VKSSFLDGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQGIVV 1004
>RPOC_CLOTE (Q890N5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1135 Score = 51.6 bits (122), Expect = 8e-07 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 1/116 (0%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L N + M +G++GS I Q+ G N GK I LP Sbjct: 697 LDRFNPIFMMADSGARGSKSQIKQLAGMRGLMANPSGKIIE-------LP---------- 739 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 + S+ GL E+F G R+G DTA+KT+++GY+ RRLV +D++V+ Sbjct: 740 ----IRASFREGLDVSEYFISTHGARKGNADTALKTADSGYLTRRLVDVSQDVIVR 791
>RPOC_XANC5 (Q3BWZ0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 51.6 bits (122), Expect = 8e-07 Identities = 33/110 (30%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N+L M +G++GS I Q+ G + + + P G + T + Sbjct: 720 NSLYIMADSGARGSQAQIRQLA---GMRGLMAR--PDGSIIETP---------------I 759 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 + ++ GL QE+F G R+GL DTA+KT+ +GY+ RRLV +D+++ Sbjct: 760 KANFREGLNVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDVVI 809
>RPOC_XANAC (Q8PNS9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 51.6 bits (122), Expect = 8e-07 Identities = 33/110 (30%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N+L M +G++GS I Q+ G + + + P G + T + Sbjct: 720 NSLYIMADSGARGSQAQIRQLA---GMRGLMAR--PDGSIIETP---------------I 759 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 + ++ GL QE+F G R+GL DTA+KT+ +GY+ RRLV +D+++ Sbjct: 760 KANFREGLNVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDVVI 809
>RPOC_ENTFA (Q82Z41) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 51.6 bits (122), Expect = 8e-07 Identities = 31/113 (27%), Positives = 55/113 (48%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M +G++G+ N +Q+ G RI LP + Sbjct: 724 NPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRI------MELP--------------I 763 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 +++ GL+ E F G R+G+ DTA+KT+++GY+ RRLV +D++++ D Sbjct: 764 ISNFREGLSVLEMFISTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRED 816
>RPOC_BACTN (Q8A470) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1427 Score = 51.6 bits (122), Expect = 8e-07 Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M+ +G++GS I Q++ G K G E + Sbjct: 715 NSVYMMLDSGARGSKEQIRQLSGMRGLMAKLQKA------------------GAEGGQII 756 Query: 193 ENSYL----RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 354 EN L GL+ E+F G R+GL DTA+KT++ GY+ RRLV D+++ + G Sbjct: 757 ENPILSNFKEGLSVLEYFISTHGARKGLADTALKTADAGYLTRRLVDVSHDVIITEEDCG 816 Query: 355 TVR 363 T+R Sbjct: 817 TLR 819
>RPOC_THETN (Q8R7U7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1183 Score = 51.6 bits (122), Expect = 8e-07 Identities = 21/52 (40%), Positives = 36/52 (69%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 + +++ GL EFF G R+GL DTA++T+++GY+ RRLV +D++V+ Sbjct: 739 IRSNFREGLNVLEFFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 790
>RPOC_BORGA (Q661N0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1377 Score = 51.6 bits (122), Expect = 8e-07 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 2/57 (3%) Frame = +1 Query: 196 NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTV 360 +++ GL+ EFF G R+GL DTA+KT++ GY+ RRLV +D++V+ + GT+ Sbjct: 724 SNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI 780
>RPOC_BORBU (O51349) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1377 Score = 51.6 bits (122), Expect = 8e-07 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 2/57 (3%) Frame = +1 Query: 196 NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTV 360 +++ GL+ EFF G R+GL DTA+KT++ GY+ RRLV +D++V+ + GT+ Sbjct: 724 SNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI 780
>RPOC_XANOR (Q8KTH8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 51.6 bits (122), Expect = 8e-07 Identities = 33/110 (30%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N+L M +G++GS I Q+ G + + + P G + T + Sbjct: 721 NSLYIMADSGARGSQAQIRQLA---GMRGLMAR--PDGSIIETP---------------I 760 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 + ++ GL QE+F G R+GL DTA+KT+ +GY+ RRLV +D+++ Sbjct: 761 KANFREGLNVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDVVI 810
>RPOC_XANCP (Q8PC55) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 51.6 bits (122), Expect = 8e-07 Identities = 33/110 (30%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N+L M +G++GS I Q+ G + + + P G + T + Sbjct: 721 NSLYIMADSGARGSQAQIRQLA---GMRGLMAR--PDGSIIETP---------------I 760 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 + ++ GL QE+F G R+GL DTA+KT+ +GY+ RRLV +D+++ Sbjct: 761 KANFREGLNVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDVVI 810
>RPOC_XANC8 (Q4URD3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 51.6 bits (122), Expect = 8e-07 Identities = 33/110 (30%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N+L M +G++GS I Q+ G + + + P G + T + Sbjct: 721 NSLYIMADSGARGSQAQIRQLA---GMRGLMAR--PDGSIIETP---------------I 760 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 + ++ GL QE+F G R+GL DTA+KT+ +GY+ RRLV +D+++ Sbjct: 761 KANFREGLNVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDVVI 810
>RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1394 Score = 51.6 bits (122), Expect = 8e-07 Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 2/63 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R Sbjct: 169 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 228 Query: 364 NSL 372 L Sbjct: 229 GIL 231
>RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 51.6 bits (122), Expect = 8e-07 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R Sbjct: 169 IQSNLREGLSVTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHILVRRTDCGTIR 228
>RPOC_NITOC (Q3J8Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1403 Score = 51.6 bits (122), Expect = 8e-07 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D GT R Sbjct: 765 E-----GLDVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTKDDCGTTR 818
>RPOC2_NEPOL (Q9TL04) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1463 Score = 51.6 bits (122), Expect = 8e-07 Identities = 20/52 (38%), Positives = 36/52 (69%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 + +++ GLT E+ G R+GL+DTA++T+ +GY+ RRLV +DI+++ Sbjct: 184 IRSNFREGLTVTEYIISCYGARKGLVDTALRTANSGYLTRRLVDVAQDIVIR 235
>RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1387 Score = 51.2 bits (121), Expect = 1e-06 Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV--KYDGTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V K GTVR Sbjct: 169 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRKDCGTVR 228
>RPOC_NITEU (Q82T76) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 51.2 bits (121), Expect = 1e-06 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q++ G + + K P G + T P + F Sbjct: 731 NSIYMMADSGARGSAAQIRQLS---GMRGLMAK--PDGSIIET----------PITANFR 775 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD------G 354 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ D G Sbjct: 776 E-----GLNILQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITEDDCDTDGG 830 Query: 355 TVRNSL---GDVI 384 + +L GDVI Sbjct: 831 VIMKALVEGGDVI 843
>RPOC_LACSS (Q38UQ3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1214 Score = 51.2 bits (121), Expect = 1e-06 Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 2/63 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 V +++ GL+ E F G R+G+ DTA+KT+++GY+ RRLV +D++++ + GT R Sbjct: 763 VTSNFREGLSVMEMFMSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREEDCGTDR 822 Query: 364 NSL 372 L Sbjct: 823 GLL 825
>RPOC_PSYAR (Q4FQH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 51.2 bits (121), Expect = 1e-06 Identities = 33/113 (29%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T + Sbjct: 722 NSIFIMSDSGARGSAAQIRQLA---GMRGLMAK--PDGSIIETP---------------I 761 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 + ++ GLT ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ D Sbjct: 762 KANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITSD 814
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 51.2 bits (121), Expect = 1e-06 Identities = 20/52 (38%), Positives = 38/52 (73%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ Sbjct: 165 IQSNFREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR 216
>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1332 Score = 51.2 bits (121), Expect = 1e-06 Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GTVR Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVR 224
>RPOC_SILPO (Q5LMQ6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 51.2 bits (121), Expect = 1e-06 Identities = 35/113 (30%), Positives = 58/113 (51%) Frame = +1 Query: 7 ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 186 E N++ M +G++GS ++QM G + + K P G + T Sbjct: 715 EPNSVYMMAHSGARGS---VTQMKQLGGMRGLMAK--PNGDIIETP-------------- 755 Query: 187 FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 + +++ GLT E+F G R+GL DTA+KT+ +GY+ RRLV +D +V+ Sbjct: 756 -IISNFKEGLTVLEYFNSTHGARKGLSDTALKTANSGYLTRRLVDVAQDCIVR 807
>RPOC_EHRCJ (Q3YST4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1410 Score = 51.2 bits (121), Expect = 1e-06 Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS SQM G + + K P G + T + Sbjct: 716 NSIYMMAHSGARGS---ASQMKQLSGMRGLMAK--PSGEIIETP---------------I 755 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED-IMVKYDGTVRN 366 +++ GL E+F G R+GL DTA+KT+ +GY+ RRLV +D I+V+YD N Sbjct: 756 ISNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVVEYDCKTHN 814
>RPOC2_MESVI (Q9MUS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1223 Score = 51.2 bits (121), Expect = 1e-06 Identities = 30/111 (27%), Positives = 57/111 (51%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M +G++G N+SQ++ VG + + D G + Sbjct: 139 NPVYMMAFSGARG---NLSQVSQLVGMRGL-----------------MSDPQGQIIDLPI 178 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +++ GLT E+ G R+GL+DTA++T+++GY+ RRLV +D++++ Sbjct: 179 RSNFREGLTVTEYVISCYGARKGLVDTALRTADSGYLTRRLVDVAQDMIIR 229
>RPOC_CLOAB (Q97EH0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1182 Score = 51.2 bits (121), Expect = 1e-06 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Frame = +1 Query: 1 LSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 L N + M +G++GS I Q+ G N GK I LP Sbjct: 696 LDRFNPIFMMADSGARGSKSQIKQLAGMRGLMANPSGKIIE-------LP---------- 738 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++ S+ GL E+F G R+G DTA+KT+++GY+ RRLV +D++V+ Sbjct: 739 ----IKASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRRLVDVSQDVIVR 790
>RPOC_MESFL (Q6F0L8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1254 Score = 51.2 bits (121), Expect = 1e-06 Identities = 30/110 (27%), Positives = 53/110 (48%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M +G++G+ N +Q+ G N D G + Sbjct: 777 NPVFVMADSGARGNVSNFTQLVGMRGLMN--------------------DTKGDIKEIPI 816 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 ++S+ GL+ E+F G R+G+ D A+KT+++GY+ RRLV ++I+V Sbjct: 817 KSSFREGLSVSEYFVSTHGARKGMADLALKTADSGYLTRRLVDVSQEIVV 866
>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1330 Score = 51.2 bits (121), Expect = 1e-06 Identities = 20/52 (38%), Positives = 38/52 (73%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ Sbjct: 159 IQSNFREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR 210
>RPOC2_CYAPA (P48120) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1265 Score = 50.8 bits (120), Expect = 1e-06 Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 4/115 (3%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNV----EGKRIPFGFVDRTLPHFTKDDYGPES 180 N+L M +G++G N+SQ+ VG + + +G+ I F Sbjct: 129 NSLYMMSFSGARG---NLSQVHQLVGMRGLMADPQGEIIDFP------------------ 167 Query: 181 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 + +++ GLT E+ + G R+G++DTA++T+++GY+ RRLV ++++++ Sbjct: 168 ---IRSNFKEGLTTTEYLISSYGARKGVVDTALRTADSGYLTRRLVDIAQEVIIR 219
>RPOC_SHISS (Q3YUZ6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_SHIFL (P0A8T9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_SHIDS (Q32AG0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_SHIBS (Q31U09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_SALTY (P0A2R4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_SALTI (P0A2R5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_SALPA (Q5PK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_SALCH (Q57H68) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_LACAC (Q5FM96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 50.8 bits (120), Expect = 1e-06 Identities = 21/54 (38%), Positives = 37/54 (68%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 V +++ GL+ E F G R+G+ DTA+KT+++GY+ RRLV +D++++ D Sbjct: 766 VTSNFKEGLSVLELFMSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDD 819
>RPOC_ECOLI (P0A8T7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_ECOL6 (Q8FB83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_ECO57 (P0A8T8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_BUCAI (P57145) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.8 bits (120), Expect = 1e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIFMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTQD 812
>RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 224
>RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R Sbjct: 169 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 228
>RPOC_PELCD (Q3A6Q3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 50.8 bits (120), Expect = 1e-06 Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 9/133 (6%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 713 NSIHMMADSGARGSAQQIRQLA---GMRGLMAK--PSGEIIET----------PITANFR 757 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV------KYDG 354 E GLT ++F G R+GL DTA+KT+ +GY+ RRLV +D ++ DG Sbjct: 758 E-----GLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDAIITEQDCDSLDG 812 Query: 355 TVRNSL---GDVI 384 V +L G+VI Sbjct: 813 IVMTALTEGGEVI 825
>RPOC_CAUCR (Q9AAU1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 50.8 bits (120), Expect = 1e-06 Identities = 22/51 (43%), Positives = 35/51 (68%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 + +++ GLT QE+F G R+GL DTA+KT+ +GY+ RRLV +D ++ Sbjct: 755 IVSNFKEGLTVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCII 805
>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1376 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 224
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1377 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R Sbjct: 169 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 228
>RPOC_CYAME (Q85FR6) Bifunctional DNA-directed RNA polymerase beta' and beta''| chain (EC 2.7.7.6) (PEP) [Includes: DNA-directed RNA polymerase beta' chain (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit); DNA-directed RNA poly Length = 1676 Score = 50.8 bits (120), Expect = 1e-06 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M +G++G N+SQ+ VG + + PH D + Sbjct: 710 NPVYMMAFSGARG---NLSQVRQLVGMRGLMAD-----------PHGQLIDLP------I 749 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 +++ GLT E+ + G R+GL+DT+++T+++GY+ RRLV +D++++ GT+R Sbjct: 750 LSNFREGLTVTEYLISSYGARKGLVDTSLRTADSGYLTRRLVDVAQDVIIRQADCGTLR 808
>RPOC_AZOSE (Q5P338) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 50.8 bits (120), Expect = 1e-06 Identities = 33/113 (29%), Positives = 55/113 (48%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T + Sbjct: 722 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIETP---------------I 761 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 ++ GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 762 TTNFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVTED 814
>RPOC2_GLOVI (Q7NDF7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1262 Score = 50.8 bits (120), Expect = 1e-06 Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 1/112 (0%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 189 N++ M +G++G+ + Q+ G N +G+ I LP Sbjct: 126 NSVGMMAFSGARGNLSQVRQLVGMRGLMANPQGEIID-------LP-------------- 164 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++ ++ GL E+ + G R+GL+DTA++T+++GY+ RRLV +D++V+ Sbjct: 165 IKANFREGLNVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVR 216
>RPOC_CHLCH (Q3ATP4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1502 Score = 50.8 bits (120), Expect = 1e-06 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 7/124 (5%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVG-----QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 N L M+ +G++GS + Q+T G Q+++ G+ P ++ + K+ Sbjct: 766 NPLYMMLDSGARGSREQVRQLTGMRGLIARPQKSMSGQ--PGEIIENPIISNLKE----- 818 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD-- 351 GLT E+F G R+GL DT++KT++ GY+ RRL +D++V D Sbjct: 819 -----------GLTVLEYFISTHGARKGLSDTSLKTADAGYLTRRLHDVAQDVIVTIDDC 867 Query: 352 GTVR 363 GT R Sbjct: 868 GTTR 871
>RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1381 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTA++TS+ GY+ RRLV+ ++ I+V+ GTVR Sbjct: 169 IQSNLREGLSLTEYIISCYGARKGVVDTAIRTSDAGYLTRRLVEVVQHIVVRRTDCGTVR 228
>RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1445 Score = 50.8 bits (120), Expect = 1e-06 Identities = 20/52 (38%), Positives = 38/52 (73%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ Sbjct: 165 IKSNFREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR 216
>RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R Sbjct: 169 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 228
>RPOC_CHLTE (Q8KG14) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1490 Score = 50.8 bits (120), Expect = 1e-06 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 7/124 (5%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVG-----QQNVEGKRIPFGFVDRTLPHFTKDDYGPE 177 N L M+ +G++GS + Q+T G Q+++ G+ P ++ + K+ Sbjct: 767 NPLYMMLDSGARGSREQVRQLTGMRGLIARPQKSMSGQ--PGEIIENPIISNLKE----- 819 Query: 178 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD-- 351 GLT E+F G R+GL DT++KT++ GY+ RRL +D++V D Sbjct: 820 -----------GLTVLEYFISTHGARKGLSDTSLKTADAGYLTRRLHDVAQDVIVTIDDC 868 Query: 352 GTVR 363 GT R Sbjct: 869 GTTR 872
>RPOC_ACIAD (Q6FF89) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1397 Score = 50.4 bits (119), Expect = 2e-06 Identities = 32/110 (29%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T + Sbjct: 725 NSIYMMSDSGARGSAAQIRQLA---GMRGLMAK--PDGSIIETP---------------I 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 + ++ GLT ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ Sbjct: 765 KANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVI 814
>RPOC_XYLFT (Q87A33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.4 bits (119), Expect = 2e-06 Identities = 35/110 (31%), Positives = 54/110 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N+L M +G++GS I Q+ A G P G + T + Sbjct: 720 NSLYIMADSGARGSPQQIRQLAAMRGLMVR-----PDGSIIETP---------------I 759 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 + ++ GL+ QE+F G R+GL DTA+KT+ +GY+ RRLV +D+ V Sbjct: 760 KANFREGLSVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVTQDLCV 809
>RPOC_XYLFA (Q9PA87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.4 bits (119), Expect = 2e-06 Identities = 35/110 (31%), Positives = 54/110 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N+L M +G++GS I Q+ A G P G + T + Sbjct: 720 NSLYIMADSGARGSPQQIRQLAAMRGLMVR-----PDGSIIETP---------------I 759 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 + ++ GL+ QE+F G R+GL DTA+KT+ +GY+ RRLV +D+ V Sbjct: 760 KANFREGLSVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVTQDLCV 809
>RPOC_ERWCT (Q6DAM9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 50.4 bits (119), Expect = 2e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIFMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_YERPS (Q66FQ1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 50.4 bits (119), Expect = 2e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIFMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_YERPE (Q8D1H3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 50.4 bits (119), Expect = 2e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIFMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_PHOPR (Q6LLW3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 50.4 bits (119), Expect = 2e-06 Identities = 35/113 (30%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 721 NSVYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 765 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ D Sbjct: 766 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVITAD 813
>RPOC_PHOLL (Q7N9A3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 50.4 bits (119), Expect = 2e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIFMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 50.4 bits (119), Expect = 2e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIFMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
>RPOC_RALEJ (Q46WD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 50.4 bits (119), Expect = 2e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 726 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 770 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 771 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVED 818
>RPOC_BORPE (Q7W0R8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 50.4 bits (119), Expect = 2e-06 Identities = 35/113 (30%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITED 812
>RPOC_BORPA (Q7W2G8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 50.4 bits (119), Expect = 2e-06 Identities = 35/113 (30%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITED 812
>RPOC_BORBR (Q7WRD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 50.4 bits (119), Expect = 2e-06 Identities = 35/113 (30%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ D Sbjct: 765 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITED 812
>RPOC_ANAMM (Q5PBG3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 50.4 bits (119), Expect = 2e-06 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS SQM G + + K P G + T + Sbjct: 711 NSIYMMANSGARGS---ASQMKQLAGMRGLMAK--PSGEIIETP---------------I 750 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED-IMVKYD 351 +++ GL+ E+F G R+GL DTA+KT+ +GY+ RRLV +D +V+YD Sbjct: 751 ISNFREGLSVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCTVVEYD 804
>RPOC_HAEDU (Q7VKL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 50.4 bits (119), Expect = 2e-06 Identities = 34/113 (30%), Positives = 57/113 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS + I Q+ G + + + P G + T P + F Sbjct: 721 NSIFMMADSGARGSAVQIRQLA---GMRGLMAR--PDGSIIET----------PITANFR 765 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ D Sbjct: 766 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITED 813
>RPOC_RALSO (Q8XUZ9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 50.4 bits (119), Expect = 2e-06 Identities = 36/113 (31%), Positives = 56/113 (49%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 726 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 770 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 771 E-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVED 818
>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1361 Score = 50.4 bits (119), Expect = 2e-06 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R Sbjct: 169 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRRDCGTIR 228
>RPOC_DECAR (Q47JA9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1403 Score = 50.4 bits (119), Expect = 2e-06 Identities = 32/113 (28%), Positives = 55/113 (48%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T + Sbjct: 722 NSIYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIETP---------------I 761 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 ++ GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+++ D Sbjct: 762 TTNFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITED 814
>RPOC2_CHAGL (Q8MA10) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 50.1 bits (118), Expect = 2e-06 Identities = 19/52 (36%), Positives = 38/52 (73%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 +++++ GL+ E+ G R+G++DTAV+T++ GY+ RRLV+ ++ I+V+ Sbjct: 165 IQSNFREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIVVR 216
>RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 50.1 bits (118), Expect = 2e-06 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R Sbjct: 169 IQSNLREGLSLTEYTISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 228
>RPOC_ZYMMO (Q5NPK4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 50.1 bits (118), Expect = 2e-06 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N + M +G++GS I Q+ G + + K P G + T + Sbjct: 715 NAIYMMAHSGARGSAAQIKQLA---GMRGLMAK--PSGEIIETP---------------I 754 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 +++ GLT E+F G R+GL DTA+KT+ +GY+ RRLV +D +V D GT R Sbjct: 755 ISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVVVEDDCGTER 813
>RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 50.1 bits (118), Expect = 2e-06 Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 363 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTLR 224
>RPOC_PSEU2 (Q4ZMN8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 50.1 bits (118), Expect = 2e-06 Identities = 35/110 (31%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSMYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 E GL+ ++F G R+GL DTA+KT+ +GY+ RRLV +D++V Sbjct: 765 E-----GLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809
>RPOC_PSESM (Q889X7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 50.1 bits (118), Expect = 2e-06 Identities = 35/110 (31%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSMYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 E GL+ ++F G R+GL DTA+KT+ +GY+ RRLV +D++V Sbjct: 765 E-----GLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809
>RPOC_PSEPK (Q88QP1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 50.1 bits (118), Expect = 2e-06 Identities = 35/110 (31%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSMYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 E GL+ ++F G R+GL DTA+KT+ +GY+ RRLV +D++V Sbjct: 765 E-----GLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809
>RPOC_PSEPF (Q3K5Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 50.1 bits (118), Expect = 2e-06 Identities = 35/110 (31%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSMYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 E GL+ ++F G R+GL DTA+KT+ +GY+ RRLV +D++V Sbjct: 765 E-----GLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809
>RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 50.1 bits (118), Expect = 2e-06 Identities = 35/110 (31%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSMYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 E GL+ ++F G R+GL DTA+KT+ +GY+ RRLV +D++V Sbjct: 765 E-----GLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809
>RPOC_PSE14 (Q48D30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 50.1 bits (118), Expect = 2e-06 Identities = 35/110 (31%), Positives = 56/110 (50%) Frame = +1 Query: 13 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 192 N++ M +G++GS I Q+ G + + K P G + T P + F Sbjct: 720 NSMYMMADSGARGSAAQIRQLA---GMRGLMAK--PDGSIIET----------PITANFR 764 Query: 193 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 E GL+ ++F G R+GL DTA+KT+ +GY+ RRLV +D++V Sbjct: 765 E-----GLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809
>RPOC_LEUPS (P94899) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 989 Score = 50.1 bits (118), Expect = 2e-06 Identities = 22/52 (42%), Positives = 34/52 (65%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 V ++ GLT E F G R+G+ DTA+KT+ +GY+ RRLV +D++V+ Sbjct: 697 VTANFREGLTVMEMFISTHGARKGMSDTALKTANSGYLTRRLVDVAQDVIVR 748
>RPOC_LEUME (P94892) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 989 Score = 50.1 bits (118), Expect = 2e-06 Identities = 22/52 (42%), Positives = 34/52 (65%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 V ++ GLT E F G R+G+ DTA+KT+ +GY+ RRLV +D++V+ Sbjct: 697 VTANFREGLTVMEMFISTHGARKGMSDTALKTANSGYLTRRLVDVAQDVIVR 748
>RPOC2_CHLVU (P12465) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1562 Score = 50.1 bits (118), Expect = 2e-06 Identities = 19/51 (37%), Positives = 36/51 (70%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 342 +++++ GLT E+ G R+GL+DTA++T+ GY+ RRLV A++ +++ Sbjct: 220 IQSNFREGLTITEYLLSCYGARKGLVDTALRTASAGYLTRRLVDAVQHVVI 270
>RPOC_PARUW (Q6MDM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1388 Score = 49.7 bits (117), Expect = 3e-06 Identities = 21/54 (38%), Positives = 37/54 (68%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 351 + +++ GL+ EF + G R+GL DTA+KT+++GY+ RRLV +D+++ D Sbjct: 757 ITSNFREGLSVIEFSISSHGARKGLADTALKTADSGYLTRRLVDVAQDVIITED 810
>RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 49.7 bits (117), Expect = 3e-06 Identities = 20/52 (38%), Positives = 37/52 (71%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR 216
>RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 49.7 bits (117), Expect = 3e-06 Identities = 20/52 (38%), Positives = 37/52 (71%) Frame = +1 Query: 190 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 345 ++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ Sbjct: 169 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR 220 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,156,619 Number of Sequences: 219361 Number of extensions: 1363525 Number of successful extensions: 3766 Number of sequences better than 10.0: 360 Number of HSP's better than 10.0 without gapping: 3681 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3753 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
