ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33g11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 454 bits (229), Expect = e-124 Identities = 376/425 (88%) Strand = Plus / Minus Query: 1 ttgtctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcatt 60 |||||||| |||||||| |||| |||||||| ||||||||||||||||| |||||||| Sbjct: 3223147 ttgtctgaaagcaacaacctgaaggctatggttactgcaggctcaaaaggaagtttcatc 3223088 Query: 61 aatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattcca 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3223087 aatatttctcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggatccca 3223028 Query: 121 tttggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagt 180 ||||| || ||||||| || |||||||||||||| |||||||| || || || |||||| Sbjct: 3223027 tttggcttcattgatcgaacgttgccccacttcacaaaagatgattatggtcctgaaagt 3222968 Query: 181 cgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccat 240 ||||||||||| |||||||| |||||| |||||||||||||||| ||||||||||| ||| Sbjct: 3222967 cgtgggtttgtggagaactcttaccttagaggtctgacaccacaagaatttttctttcat 3222908 Query: 241 gctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatat 300 ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||| Sbjct: 3222907 gctatgggtggtagagaaggtctgattgatactgctgtgaagacctctgagactggatat 3222848 Query: 301 atacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgtt 360 || || || | || |||||||||||||| || || || ||||||||||||||||| || Sbjct: 3222847 atccagcgacgacttgtgaaggctatggaagatatcatagtgaaatatgatggtacggta 3222788 Query: 361 cgaaattcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtt 420 ||||||| |||| || || ||| | ||||| ||||||||||||||||||||||||||| Sbjct: 3222787 agaaattccttgggagacgtcattcagttcttatatggagaagatggcatggatgctgtt 3222728 Query: 421 tggat 425 ||||| Sbjct: 3222727 tggat 3222723 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ttgtctgagagcaacaattt 20 |||||||||||||||||||| Sbjct: 9017774 ttgtctgagagcaacaattt 9017755
>dbj|AP003905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1177_E11 Length = 92375 Score = 454 bits (229), Expect = e-124 Identities = 376/425 (88%) Strand = Plus / Minus Query: 1 ttgtctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcatt 60 |||||||| |||||||| |||| |||||||| ||||||||||||||||| |||||||| Sbjct: 79227 ttgtctgaaagcaacaacctgaaggctatggttactgcaggctcaaaaggaagtttcatc 79168 Query: 61 aatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattcca 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 79167 aatatttctcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggatccca 79108 Query: 121 tttggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagt 180 ||||| || ||||||| || |||||||||||||| |||||||| || || || |||||| Sbjct: 79107 tttggcttcattgatcgaacgttgccccacttcacaaaagatgattatggtcctgaaagt 79048 Query: 181 cgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccat 240 ||||||||||| |||||||| |||||| |||||||||||||||| ||||||||||| ||| Sbjct: 79047 cgtgggtttgtggagaactcttaccttagaggtctgacaccacaagaatttttctttcat 78988 Query: 241 gctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatat 300 ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||| Sbjct: 78987 gctatgggtggtagagaaggtctgattgatactgctgtgaagacctctgagactggatat 78928 Query: 301 atacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgtt 360 || || || | || |||||||||||||| || || || ||||||||||||||||| || Sbjct: 78927 atccagcgacgacttgtgaaggctatggaagatatcatagtgaaatatgatggtacggta 78868 Query: 361 cgaaattcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtt 420 ||||||| |||| || || ||| | ||||| ||||||||||||||||||||||||||| Sbjct: 78867 agaaattccttgggagacgtcattcagttcttatatggagaagatggcatggatgctgtt 78808 Query: 421 tggat 425 ||||| Sbjct: 78807 tggat 78803
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 454 bits (229), Expect = e-124 Identities = 376/425 (88%) Strand = Plus / Minus Query: 1 ttgtctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcatt 60 |||||||| |||||||| |||| |||||||| ||||||||||||||||| |||||||| Sbjct: 714 ttgtctgaaagcaacaacctgaaggctatggttactgcaggctcaaaaggaagtttcatc 655 Query: 61 aatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattcca 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 654 aatatttctcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggatccca 595 Query: 121 tttggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagt 180 ||||| || ||||||| || |||||||||||||| |||||||| || || || |||||| Sbjct: 594 tttggcttcattgatcgaacgttgccccacttcacaaaagatgattatggtcctgaaagt 535 Query: 181 cgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccat 240 ||||||||||| |||||||| |||||| |||||||||||||||| ||||||||||| ||| Sbjct: 534 cgtgggtttgtggagaactcttaccttagaggtctgacaccacaagaatttttctttcat 475 Query: 241 gctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatat 300 ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||| Sbjct: 474 gctatgggtggtagagaaggtctgattgatactgctgtgaagacctctgagactggatat 415 Query: 301 atacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgtt 360 || || || | || |||||||||||||| || || || ||||||||||||||||| || Sbjct: 414 atccagcgacgacttgtgaaggctatggaagatatcatagtgaaatatgatggtacggta 355 Query: 361 cgaaattcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtt 420 ||||||| |||| || || ||| | ||||| ||||||||||||||||||||||||||| Sbjct: 354 agaaattccttgggagacgtcattcagttcttatatggagaagatggcatggatgctgtt 295 Query: 421 tggat 425 ||||| Sbjct: 294 tggat 290
>ref|XM_493925.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 5226 Score = 430 bits (217), Expect = e-117 Identities = 373/425 (87%) Strand = Plus / Plus Query: 1 ttgtctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcatt 60 |||||||| || |||||| |||| ||||||| ||| |||||||||||||| | |||||| Sbjct: 2107 ttgtctgaaagtaacaatctgaaggctatggccaccgcaggctcaaaaggaactttcatc 2166 Query: 61 aatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattcca 120 |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2167 aatatttcacagatgactgcttgtgtcggacagcagaatgttgagggcaagcggatccca 2226 Query: 121 tttggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagt 180 ||||| || |||| ||||||||||||||||||||| ||||||| || || |||||| Sbjct: 2227 tttggcttcaccaatcgaacattgccccacttcacgaaaaatgactatggtcctgaaagt 2286 Query: 181 cgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccat 240 ||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 2287 cgtgggtttgtggagaactcttaccttcgaggcctgacaccacaagaatttttctttcat 2346 Query: 241 gctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatat 300 ||||||||||||||||||||| ||||||||||||||||||| ||||| || || |||||| Sbjct: 2347 gctatgggtggtagagaaggtctgattgatactgctgtgaagacctcggaaactggatat 2406 Query: 301 atacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgtt 360 || || || | || |||||||||||||| || || |||||||| ||||||||||||||| Sbjct: 2407 atccagcgacgacttgtgaaggctatggaagatatcatggtgaagtatgatggtactgtt 2466 Query: 361 cgaaattcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtt 420 ||||||| |||| ||||| ||| | ||||| |||||||||||||||||||||||| || Sbjct: 2467 agaaattctttgggagatgtcattcagttcttatatggagaagatggcatggatgctatt 2526 Query: 421 tggat 425 ||||| Sbjct: 2527 tggat 2531
>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07, complete sequence Length = 164898 Score = 430 bits (217), Expect = e-117 Identities = 373/425 (87%) Strand = Plus / Minus Query: 1 ttgtctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcatt 60 |||||||| || |||||| |||| ||||||| ||| |||||||||||||| | |||||| Sbjct: 74176 ttgtctgaaagtaacaatctgaaggctatggccaccgcaggctcaaaaggaactttcatc 74117 Query: 61 aatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattcca 120 |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 74116 aatatttcacagatgactgcttgtgtcggacagcagaatgttgagggcaagcggatccca 74057 Query: 121 tttggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagt 180 ||||| || |||| ||||||||||||||||||||| ||||||| || || |||||| Sbjct: 74056 tttggcttcaccaatcgaacattgccccacttcacgaaaaatgactatggtcctgaaagt 73997 Query: 181 cgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccat 240 ||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 73996 cgtgggtttgtggagaactcttaccttcgaggcctgacaccacaagaatttttctttcat 73937 Query: 241 gctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatat 300 ||||||||||||||||||||| ||||||||||||||||||| ||||| || || |||||| Sbjct: 73936 gctatgggtggtagagaaggtctgattgatactgctgtgaagacctcggaaactggatat 73877 Query: 301 atacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgtt 360 || || || | || |||||||||||||| || || |||||||| ||||||||||||||| Sbjct: 73876 atccagcgacgacttgtgaaggctatggaagatatcatggtgaagtatgatggtactgtt 73817 Query: 361 cgaaattcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtt 420 ||||||| |||| ||||| ||| | ||||| |||||||||||||||||||||||| || Sbjct: 73816 agaaattctttgggagatgtcattcagttcttatatggagaagatggcatggatgctatt 73757 Query: 421 tggat 425 ||||| Sbjct: 73756 tggat 73752
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 430 bits (217), Expect = e-117 Identities = 373/425 (87%) Strand = Plus / Minus Query: 1 ttgtctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcatt 60 |||||||| || |||||| |||| ||||||| ||| |||||||||||||| | |||||| Sbjct: 2879565 ttgtctgaaagtaacaatctgaaggctatggccaccgcaggctcaaaaggaactttcatc 2879506 Query: 61 aatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattcca 120 |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2879505 aatatttcacagatgactgcttgtgtcggacagcagaatgttgagggcaagcggatccca 2879446 Query: 121 tttggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagt 180 ||||| || |||| ||||||||||||||||||||| ||||||| || || |||||| Sbjct: 2879445 tttggcttcaccaatcgaacattgccccacttcacgaaaaatgactatggtcctgaaagt 2879386 Query: 181 cgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccat 240 ||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 2879385 cgtgggtttgtggagaactcttaccttcgaggcctgacaccacaagaatttttctttcat 2879326 Query: 241 gctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatat 300 ||||||||||||||||||||| ||||||||||||||||||| ||||| || || |||||| Sbjct: 2879325 gctatgggtggtagagaaggtctgattgatactgctgtgaagacctcggaaactggatat 2879266 Query: 301 atacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgtt 360 || || || | || |||||||||||||| || || |||||||| ||||||||||||||| Sbjct: 2879265 atccagcgacgacttgtgaaggctatggaagatatcatggtgaagtatgatggtactgtt 2879206 Query: 361 cgaaattcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtt 420 ||||||| |||| ||||| ||| | ||||| |||||||||||||||||||||||| || Sbjct: 2879205 agaaattctttgggagatgtcattcagttcttatatggagaagatggcatggatgctatt 2879146 Query: 421 tggat 425 ||||| Sbjct: 2879145 tggat 2879141
>gb|AF519538.1| Zea mays RNA polymerase II largest subunit (RPB1) mRNA, partial cds Length = 3027 Score = 422 bits (213), Expect = e-115 Identities = 372/425 (87%) Strand = Plus / Plus Query: 1 ttgtctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcatt 60 |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 2017 ttgtctgaaagcaacaatttgaaggctatggtcactgcaggttcaaaaggcagtttcatt 2076 Query: 61 aatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattcca 120 || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct: 2077 aacatttcacaaatgactgcttgtgtgggacagcagaatgttgagggcaagcggatccct 2136 Query: 121 tttggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagt 180 |||||||| ||||||| || ||||| || ||||| ||||||||||| || || |||||| Sbjct: 2137 tttggtttcattgatcggacgttgccacatttcacaaaagatgactatggtcctgaaagt 2196 Query: 181 cgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccat 240 ||||| ||||| || || || ||||| |||||||||||||| || ||||||||||| || Sbjct: 2197 cgtggatttgtggaaaattcttacctccgaggtctgacaccgcaagaatttttctttcac 2256 Query: 241 gctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatat 300 |||||||||||||| |||||| | || || ||||||||||||||||| ||||| || ||| Sbjct: 2257 gctatgggtggtagggaaggtcttatagacactgctgtgaaaacctctgagactgggtat 2316 Query: 301 atacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgtt 360 || || |||| || ||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct: 2317 atccagaggagacttgtgaaagctatggaggacatcatggttaaatatgatggtactgta 2376 Query: 361 cgaaattcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtt 420 ||||||| || || ||||| || | ||||||||||||||||||||||||||||||||| Sbjct: 2377 agaaattctcttggagatgtcatccagttcttgtatggagaagatggcatggatgctgtt 2436 Query: 421 tggat 425 ||||| Sbjct: 2437 tggat 2441
>gb|AF519539.1| Magnolia x soulangeana RNA polymerase II largest subunit (RPB1) mRNA, partial cds Length = 3030 Score = 264 bits (133), Expect = 2e-67 Identities = 343/413 (83%) Strand = Plus / Plus Query: 13 aacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatttcgcaa 72 |||||| |||| |||||||| || ||||| ||||| || ||||| || || ||||| || Sbjct: 2032 aacaatctgaaggctatggtgacagcaggatcaaagggaagttttatcaacatttcacag 2091 Query: 73 atgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggttttgtt 132 |||||||||||||| ||||| |||||||| ||||| || || ||||| | ||||| || Sbjct: 2092 atgactgcttgtgtgggacaacagaatgtcgagggtaaacgaattccttacggtttcatt 2151 Query: 133 gatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtgggtttgtt 192 ||||| || | || || ||||| ||||||||||| || ||||||||||| || ||||| Sbjct: 2152 gatcggacgctaccacatttcaccaaagatgactatgggcccgaaagtcggggctttgtg 2211 Query: 193 gagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatgggtggt 252 |||||||| || || || || ||||| ||||||||||| ||||| || |||||||||||| Sbjct: 2212 gagaactcatatctccgtgggctgactccacaggaattcttctttcacgctatgggtggt 2271 Query: 253 agagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaacggagg 312 || |||||| ||||||| ||||| |||||||| || |||||||| ||||| || || | Sbjct: 2272 agggaaggtctgattgacactgcagtgaaaacatctgagacggggtatattcagaggcgt 2331 Query: 313 ctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcgaaattcgctg 372 ||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||| | Sbjct: 2332 ctcgtgaaggctatggaagacattatggtcaaatatgatggtactgttaggaattcatta 2391 Query: 373 ggtgatgttatttaattcttgtatggagaagatggcatggatgctgtttggat 425 || ||||| ||| | || ||||||||||| ||||| ||||||||||||||||| Sbjct: 2392 ggggatgtgattcagtttttgtatggagaggatggtatggatgctgtttggat 2444
>gb|AF519540.1| Nymphaea odorata RNA polymerase II largest subunit (RPB1) mRNA, partial cds Length = 3039 Score = 250 bits (126), Expect = 3e-63 Identities = 336/406 (82%) Strand = Plus / Plus Query: 20 tgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatttcgcaaatgactg 79 |||| ||||||||||||||||| || ||||| ||||| ||||||||||| || ||||||| Sbjct: 2048 tgaaggctatggtcactgcaggatctaaaggaagttttattaatatttcacagatgactg 2107 Query: 80 cttgtgtcggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgta 139 ||||||| || || |||||||| ||||| ||||| ||||| ||||| || |||| || | Sbjct: 2108 cttgtgtgggtcaacagaatgtggaggggaagcgaattccttttgggttcattgaccgca 2167 Query: 140 cattgccccacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaact 199 || |||| || || || |||||||| || || || ||||||||||| ||||| ||||||| Sbjct: 2168 cactgccacattttactaaagatgattatgggcctgaaagtcgtggttttgtggagaact 2227 Query: 200 cctaccttcgaggtctgacaccacaggaatttttcttccatgctatgggtggtagagaag 259 |||| ||||| || ||||| || ||||||||||| || ||||||||||||||||| |||| Sbjct: 2228 cctatcttcgtgggctgactcctcaggaatttttttttcatgctatgggtggtagggaag 2287 Query: 260 gtttgattgatactgctgtgaaaacctccgagacgggatatatacaacggaggctcgtga 319 |||||||||||||||| || ||||| || ||||| || || ||||| ||| | || || | Sbjct: 2288 gtttgattgatactgcagtcaaaacttcagagactggttacatacagcggcgtcttgtaa 2347 Query: 320 aggctatggaggacattatggtgaaatatgatggtactgttcgaaattcgctgggtgatg 379 | |||||||||||||| ||||| |||||||||||||| ||| | || ||| | || |||| Sbjct: 2348 aagctatggaggacatcatggtcaaatatgatggtacagttaggaactcgttaggagatg 2407 Query: 380 ttatttaattcttgtatggagaagatggcatggatgctgtttggat 425 | || | || | ||||| || ||||| ||||||||||||||||| Sbjct: 2408 tgatccagtttctttatggggaggatggtatggatgctgtttggat 2453
>gb|AY490552.1| Podocarpus macrophyllus RNA polymerase II large subunit (rpb1) mRNA, partial cds Length = 3039 Score = 240 bits (121), Expect = 3e-60 Identities = 349/425 (82%) Strand = Plus / Plus Query: 1 ttgtctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcatt 60 ||||||||||| || |||||||| || ||||| || || || |||||||| ||||| ||| Sbjct: 2029 ttgtctgagagtaataatttgaaggcaatggtgacggctggatcaaaaggaagttttatt 2088 Query: 61 aatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattcca 120 || || || || |||||||||||||| |||||||| ||||| || || ||||| ||||| Sbjct: 2089 aacatatcccagatgactgcttgtgtgggacagcaaaatgtagaagggaagcgtattccc 2148 Query: 121 tttggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagt 180 | ||| |||| || || || |||| || ||||| || |||||| | || || |||||| Sbjct: 2149 tatggatttgatggacgaaccctgcctcatttcaccaaggatgacaaaggtccagaaagt 2208 Query: 181 cgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccat 240 ||||| ||||| || || || || || || ||| |||| |||||||| || || |||||| Sbjct: 2209 cgtggctttgtggaaaattcttatctgcggggtttgactccacaggagttctttttccat 2268 Query: 241 gctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatat 300 || ||||| ||| |||||||| |||| |||||||||||||| || || || || || ||| Sbjct: 2269 gcaatgggaggtcgagaaggtctgatagatactgctgtgaagacatcagaaacaggttat 2328 Query: 301 atacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgtt 360 ||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2329 atacagcggcgacttgtgaaggctatggaggacattatggtgaaatatgatggtactgtc 2388 Query: 361 cgaaattcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtt 420 | ||||| || |||||||| ||| |||| ||||||| |||||||| |||||||||||| Sbjct: 2389 aggaattcacttggtgatgtcattcaatttctgtatggtgaagatggtatggatgctgtt 2448 Query: 421 tggat 425 ||||| Sbjct: 2449 tggat 2453
>gb|AF519535.1| Cycas revoluta RNA polymerase II largest subunit (RPB1) mRNA, partial cds Length = 3039 Score = 228 bits (115), Expect = 1e-56 Identities = 343/419 (81%) Strand = Plus / Plus Query: 7 gagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatt 66 ||||| || |||||||| || ||||| ||||| ||||||||||| ||||| |||||||| Sbjct: 2035 gagagtaataatttgaaggcaatggttactgctggctcaaaaggaagttttattaatata 2094 Query: 67 tcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggt 126 || || |||||||||||||| |||||||| |||||||| || || ||||||||||||||| Sbjct: 2095 tcacagatgactgcttgtgtgggacagcaaaatgttgaaggaaaacggattccatttggt 2154 Query: 127 tttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtggg 186 ||| | | || | | ||||| ||||||| |||||||| || || ||||||||||| Sbjct: 2155 tttttcgggcgatccctaccccatttcacgagggatgactatggtccagaaagtcgtggt 2214 Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 ||||| ||||| || || || || ||||| ||||| || || || || |||||||| ||| Sbjct: 2215 tttgtggagaattcttatctgcgtggtctaacaccgcaagagttctttttccatgcaatg 2274 Query: 247 ggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaa 306 || || |||||||| |||| ||||||||||||||||| || ||||| || || ||||| Sbjct: 2275 ggaggacgagaaggtctgatagatactgctgtgaaaacttctgagacagggtacatacag 2334 Query: 307 cggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcgaaat 366 || | || |||||||||||||||||||| ||||| ||||||||||| || || | ||| Sbjct: 2335 aggcgtcttgtgaaggctatggaggacatcatggttaaatatgatgggacagtcaggaat 2394 Query: 367 tcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtttggat 425 || | |||||||||||| | || ||||||| |||||||| ||||||||||||||||| Sbjct: 2395 tcattaggtgatgttattcagtttctgtatggggaagatggtatggatgctgtttggat 2453
>gb|AF519541.1| Amborella trichopoda RNA polymerase II largest subunit (RPB1) mRNA, partial cds Length = 3039 Score = 218 bits (110), Expect = 1e-53 Identities = 344/422 (81%) Strand = Plus / Plus Query: 4 tctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaat 63 |||||||| ||||| |||||||||||||||| ||||| || ||||| |||||||| || Sbjct: 2032 tctgagagtaacaacctgaaagctatggtcacagcaggttcgaaaggaagtttcatcaac 2091 Query: 64 atttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccattt 123 ||||| || |||||||||||||| || ||||| ||||| ||||| |||||||| || ||| Sbjct: 2092 atttcacagatgactgcttgtgtggggcagcaaaatgtcgagggaaagcggatcccgttt 2151 Query: 124 ggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgt 183 || || ||| || ||| | ||||| || || |||||||| || || || ||||||||| Sbjct: 2152 ggattcaatgaccgcacactaccccattttacaaaagatgattatggtcctgaaagtcgt 2211 Query: 184 gggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgct 243 || ||||| ||||| || |||||||| ||||| || || || || || || |||||||| Sbjct: 2212 ggctttgtggagaattcataccttcgtggtcttaccccccaagagttctttttccatgcc 2271 Query: 244 atgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatata 303 |||||||||||||||||| | || || |||||||||||||| || || || || |||||| Sbjct: 2272 atgggtggtagagaaggtctaatagacactgctgtgaaaacttctgaaactgggtatata 2331 Query: 304 caacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcga 363 || || |||| || |||||||||||||| |||||||| ||||||||||| ||||| | Sbjct: 2332 cagaggcggcttgtaaaggctatggaggatattatggttaaatatgatggaactgtgagg 2391 Query: 364 aattcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtttgg 423 || || |||| ||||| || |||| | ||||| |||||||| ||||||||||||||| Sbjct: 2392 aactccttgggagatgtcatccaatttctttatggggaagatggtatggatgctgtttgg 2451 Query: 424 at 425 || Sbjct: 2452 at 2453
>ref|NM_119746.2| Arabidopsis thaliana NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase AT4G35800 (NRPB1) mRNA, complete cds Length = 5893 Score = 202 bits (102), Expect = 7e-49 Identities = 324/398 (81%) Strand = Plus / Plus Query: 28 atggtcactgcaggctcaaaaggcagtttcattaatatttcgcaaatgactgcttgtgtc 87 ||||| || ||||| || ||||| |||||||| |||||||| |||||||| || |||||| Sbjct: 2296 atggtgacagcaggatccaaaggaagtttcatcaatatttctcaaatgacagcgtgtgtc 2355 Query: 88 ggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtacattgccc 147 || ||||| |||||||| || ||||| ||||||||||| |||| || || |||||||| Sbjct: 2356 ggtcagcaaaatgttgaagggaagcgaattccatttggatttgatgggcggacattgcca 2415 Query: 148 cacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctacctt 207 || ||||| |||||||| || || || ||||||||||| ||||||||||| || ||||| Sbjct: 2416 catttcaccaaagatgattatggtcctgaaagtcgtggttttgttgagaattcgtacctg 2475 Query: 208 cgaggtctgacaccacaggaatttttcttccatgctatgggtggtagagaaggtttgatt 267 || || |||| || || || || || |||||||||||||| || |||||||| | ||| Sbjct: 2476 cgtggcttgactcctcaagagttctttttccatgctatgggaggacgagaaggtcttatt 2535 Query: 268 gatactgctgtgaaaacctccgagacgggatatatacaacggaggctcgtgaaggctatg 327 |||||||||||||| || || || || ||||| || || || | | || ||||||||| Sbjct: 2536 gatactgctgtgaagacatcagaaactggatacattcagaggcgattggtaaaggctatg 2595 Query: 328 gaggacattatggtgaaatatgatggtactgttcgaaattcgctgggtgatgttatttaa 387 ||||| |||||||| || |||||||| || || |||| || |||||||||||||| || Sbjct: 2596 gaggatattatggttaagtatgatgggacagtcagaaactctttgggtgatgttattcaa 2655 Query: 388 ttcttgtatggagaagatggcatggatgctgtttggat 425 || | |||||||||||||| ||||||||||| ||||| Sbjct: 2656 tttctctatggagaagatggtatggatgctgtatggat 2693
>emb|X52954.1|ATRPII Arabidopsis thaliana rpII gene for RNA polymerase large subunit (EC 2.7.7.6) Length = 9235 Score = 202 bits (102), Expect = 7e-49 Identities = 324/398 (81%) Strand = Plus / Plus Query: 28 atggtcactgcaggctcaaaaggcagtttcattaatatttcgcaaatgactgcttgtgtc 87 ||||| || ||||| || ||||| |||||||| |||||||| |||||||| || |||||| Sbjct: 4348 atggtgacagcaggatccaaaggaagtttcatcaatatttctcaaatgacagcgtgtgtc 4407 Query: 88 ggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtacattgccc 147 || ||||| |||||||| || ||||| ||||||||||| |||| || || |||||||| Sbjct: 4408 ggtcagcaaaatgttgaagggaagcgaattccatttggatttgatgggcggacattgcca 4467 Query: 148 cacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctacctt 207 || ||||| |||||||| || || || ||||||||||| ||||||||||| || ||||| Sbjct: 4468 catttcaccaaagatgattatggtcctgaaagtcgtggttttgttgagaattcgtacctg 4527 Query: 208 cgaggtctgacaccacaggaatttttcttccatgctatgggtggtagagaaggtttgatt 267 || || |||| || || || || || |||||||||||||| || |||||||| | ||| Sbjct: 4528 cgtggcttgactcctcaagagttctttttccatgctatgggaggacgagaaggtcttatt 4587 Query: 268 gatactgctgtgaaaacctccgagacgggatatatacaacggaggctcgtgaaggctatg 327 |||||||||||||| || || || || ||||| || || || | | || ||||||||| Sbjct: 4588 gatactgctgtgaagacatcagaaactggatacattcagaggcgattggtaaaggctatg 4647 Query: 328 gaggacattatggtgaaatatgatggtactgttcgaaattcgctgggtgatgttatttaa 387 ||||| |||||||| || |||||||| || || |||| || |||||||||||||| || Sbjct: 4648 gaggatattatggttaagtatgatgggacagtcagaaactctttgggtgatgttattcaa 4707 Query: 388 ttcttgtatggagaagatggcatggatgctgtttggat 425 || | |||||||||||||| ||||||||||| ||||| Sbjct: 4708 tttctctatggagaagatggtatggatgctgtatggat 4745
>emb|X52494.1|ATRPB1 Arabidopsis thaliana RPB1 gene for the largest subunit of RNA polymerase II Length = 8050 Score = 202 bits (102), Expect = 7e-49 Identities = 324/398 (81%) Strand = Plus / Plus Query: 28 atggtcactgcaggctcaaaaggcagtttcattaatatttcgcaaatgactgcttgtgtc 87 ||||| || ||||| || ||||| |||||||| |||||||| |||||||| || |||||| Sbjct: 4192 atggtgacagcaggatccaaaggaagtttcatcaatatttctcaaatgacagcgtgtgtc 4251 Query: 88 ggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtacattgccc 147 || ||||| |||||||| || ||||| ||||||||||| |||| || || |||||||| Sbjct: 4252 ggtcagcaaaatgttgaagggaagcgaattccatttggatttgatgggcggacattgcca 4311 Query: 148 cacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctacctt 207 || ||||| |||||||| || || || ||||||||||| ||||||||||| || ||||| Sbjct: 4312 catttcaccaaagatgattatggtcctgaaagtcgtggttttgttgagaattcgtacctg 4371 Query: 208 cgaggtctgacaccacaggaatttttcttccatgctatgggtggtagagaaggtttgatt 267 || || |||| || || || || || |||||||||||||| || |||||||| | ||| Sbjct: 4372 cgtggcttgactcctcaagagttctttttccatgctatgggaggacgagaaggtcttatt 4431 Query: 268 gatactgctgtgaaaacctccgagacgggatatatacaacggaggctcgtgaaggctatg 327 |||||||||||||| || || || || ||||| || || || | | || ||||||||| Sbjct: 4432 gatactgctgtgaagacatcagaaactggatacattcagaggcgattggtaaaggctatg 4491 Query: 328 gaggacattatggtgaaatatgatggtactgttcgaaattcgctgggtgatgttatttaa 387 ||||| |||||||| || |||||||| || || |||| || |||||||||||||| || Sbjct: 4492 gaggatattatggttaagtatgatgggacagtcagaaactctttgggtgatgttattcaa 4551 Query: 388 ttcttgtatggagaagatggcatggatgctgtttggat 425 || | |||||||||||||| ||||||||||| ||||| Sbjct: 4552 tttctctatggagaagatggtatggatgctgtatggat 4589
>emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 84 Length = 195452 Score = 202 bits (102), Expect = 7e-49 Identities = 324/398 (81%) Strand = Plus / Minus Query: 28 atggtcactgcaggctcaaaaggcagtttcattaatatttcgcaaatgactgcttgtgtc 87 ||||| || ||||| || ||||| |||||||| |||||||| |||||||| || |||||| Sbjct: 36320 atggtgacagcaggatccaaaggaagtttcatcaatatttctcaaatgacagcgtgtgtc 36261 Query: 88 ggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtacattgccc 147 || ||||| |||||||| || ||||| ||||||||||| |||| || || |||||||| Sbjct: 36260 ggtcagcaaaatgttgaagggaagcgaattccatttggatttgatgggcggacattgcca 36201 Query: 148 cacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctacctt 207 || ||||| |||||||| || || || ||||||||||| ||||||||||| || ||||| Sbjct: 36200 catttcaccaaagatgattatggtcctgaaagtcgtggttttgttgagaattcgtacctg 36141 Query: 208 cgaggtctgacaccacaggaatttttcttccatgctatgggtggtagagaaggtttgatt 267 || || |||| || || || || || |||||||||||||| || |||||||| | ||| Sbjct: 36140 cgtggcttgactcctcaagagttctttttccatgctatgggaggacgagaaggtcttatt 36081 Query: 268 gatactgctgtgaaaacctccgagacgggatatatacaacggaggctcgtgaaggctatg 327 |||||||||||||| || || || || ||||| || || || | | || ||||||||| Sbjct: 36080 gatactgctgtgaagacatcagaaactggatacattcagaggcgattggtaaaggctatg 36021 Query: 328 gaggacattatggtgaaatatgatggtactgttcgaaattcgctgggtgatgttatttaa 387 ||||| |||||||| || |||||||| || || |||| || |||||||||||||| || Sbjct: 36020 gaggatattatggttaagtatgatgggacagtcagaaactctttgggtgatgttattcaa 35961 Query: 388 ttcttgtatggagaagatggcatggatgctgtttggat 425 || | |||||||||||||| ||||||||||| ||||| Sbjct: 35960 tttctctatggagaagatggtatggatgctgtatggat 35923
>emb|AL031986.1|ATF4B14 Arabidopsis thaliana DNA chromosome 4, BAC clone F4B14 (ESSA project) Length = 99461 Score = 202 bits (102), Expect = 7e-49 Identities = 324/398 (81%) Strand = Plus / Minus Query: 28 atggtcactgcaggctcaaaaggcagtttcattaatatttcgcaaatgactgcttgtgtc 87 ||||| || ||||| || ||||| |||||||| |||||||| |||||||| || |||||| Sbjct: 28124 atggtgacagcaggatccaaaggaagtttcatcaatatttctcaaatgacagcgtgtgtc 28065 Query: 88 ggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtacattgccc 147 || ||||| |||||||| || ||||| ||||||||||| |||| || || |||||||| Sbjct: 28064 ggtcagcaaaatgttgaagggaagcgaattccatttggatttgatgggcggacattgcca 28005 Query: 148 cacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctacctt 207 || ||||| |||||||| || || || ||||||||||| ||||||||||| || ||||| Sbjct: 28004 catttcaccaaagatgattatggtcctgaaagtcgtggttttgttgagaattcgtacctg 27945 Query: 208 cgaggtctgacaccacaggaatttttcttccatgctatgggtggtagagaaggtttgatt 267 || || |||| || || || || || |||||||||||||| || |||||||| | ||| Sbjct: 27944 cgtggcttgactcctcaagagttctttttccatgctatgggaggacgagaaggtcttatt 27885 Query: 268 gatactgctgtgaaaacctccgagacgggatatatacaacggaggctcgtgaaggctatg 327 |||||||||||||| || || || || ||||| || || || | | || ||||||||| Sbjct: 27884 gatactgctgtgaagacatcagaaactggatacattcagaggcgattggtaaaggctatg 27825 Query: 328 gaggacattatggtgaaatatgatggtactgttcgaaattcgctgggtgatgttatttaa 387 ||||| |||||||| || |||||||| || || |||| || |||||||||||||| || Sbjct: 27824 gaggatattatggttaagtatgatgggacagtcagaaactctttgggtgatgttattcaa 27765 Query: 388 ttcttgtatggagaagatggcatggatgctgtttggat 425 || | |||||||||||||| ||||||||||| ||||| Sbjct: 27764 tttctctatggagaagatggtatggatgctgtatggat 27727
>emb|CR932965.2| Medicago truncatula chromosome 5 clone mth2-47e6, COMPLETE SEQUENCE Length = 96647 Score = 194 bits (98), Expect = 2e-46 Identities = 341/422 (80%) Strand = Plus / Minus Query: 4 tctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaat 63 ||||||||||| ||| ||||||| |||||||| || || || || || ||||||||||| Sbjct: 17395 tctgagagcaataatctgaaagccatggtcacagctggttctaagggaagtttcattaac 17336 Query: 64 atttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccattt 123 || || || |||||||||||||| || || |||||||||||||| || || ||||||||| Sbjct: 17335 atatctcagatgactgcttgtgtgggccaacagaatgttgagggtaaacgaattccattt 17276 Query: 124 ggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgt 183 || || | || || |||||||| ||||| || |||||||| || || || ||||||||| Sbjct: 17275 gggttcatagaccggacattgcctcactttacaaaagatgattatgggcctgaaagtcgt 17216 Query: 184 gggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgct 243 |||||||| |||||||| || || || || ||||| || || || || || |||||||| Sbjct: 17215 gggtttgtggagaactcatatctccgtggactgacccctcaagagttctttttccatgcc 17156 Query: 244 atgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatata 303 ||||||||||| |||||| | ||||||||||||||||| || || || || || || || Sbjct: 17155 atgggtggtagggaaggtcttattgatactgctgtgaagacttcagaaactgggtacatt 17096 Query: 304 caacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcga 363 || || |||| || ||||||||||||||||| ||||| |||||||| || || ||| | Sbjct: 17095 cagaggcggcttgtaaaggctatggaggacatcatggttaaatatgacgggacagttagg 17036 Query: 364 aattcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtttgg 423 ||||| |||| ||||| || | || | ||||| ||||| || ||||||||||||||| Sbjct: 17035 aattctttgggagatgtcatacagtttctctatggtgaagacggtatggatgctgtttgg 16976 Query: 424 at 425 || Sbjct: 16975 at 16974
>gb|AF519542.1| Psilotum nudum RNA polymerase II largest subunit (RPB1) mRNA, partial cds Length = 3039 Score = 192 bits (97), Expect = 6e-46 Identities = 343/425 (80%) Strand = Plus / Plus Query: 1 ttgtctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcatt 60 ||||||||||| || ||| | || || ||||| || || || ||||| ||| |||||| Sbjct: 2029 ttgtctgagagtaataatgtcaaggcaatggttacagctggatcaaagggctctttcatc 2088 Query: 61 aatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattcca 120 || || || ||||||| ||| ||||| || || || ||||| || |||||||| || ||| Sbjct: 2089 aacatctcacaaatgattgcatgtgttggtcaacaaaatgtggaaggcaagcgcatacca 2148 Query: 121 tttggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagt 180 ||||| ||||||||||| ||| |||| || |||||||| |||||||| || || ||| | Sbjct: 2149 tttgggtttgttgatcggacactgccacatttcacgaaggatgactatggacctgaatct 2208 Query: 181 cgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccat 240 ||||| ||||| ||||| ||||| | ||||| | || || || || |||||||| ||| Sbjct: 2209 cgtggttttgtggagaattcctatttgagaggtttaactcctcaagagtttttctttcat 2268 Query: 241 gctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatat 300 |||||||| |||||||||||| | |||||||| ||||||||||| || ||||| || ||| Sbjct: 2269 gctatgggaggtagagaaggtctaattgatacggctgtgaaaacttctgagactggttat 2328 Query: 301 atacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgtt 360 ||||| | ||| | || ||||| ||||||||| |||||||||| ||||||||||| || Sbjct: 2329 atacagagaaggttggttaaggcaatggaggacgttatggtgaagtatgatggtacagtc 2388 Query: 361 cgaaattcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtt 420 || ||||| |||| ||||||||| | ||| | ||||| |||||||| |||||||| ||| Sbjct: 2389 cgcaattcattgggggatgttattgagttcctctatggtgaagatggtatggatgcagtt 2448 Query: 421 tggat 425 ||||| Sbjct: 2449 tggat 2453
>gb|DQ020635.1| Rhododendron macrophyllum RNA polymerase II largest subunit (RPB1) gene, exons 8 through 11 and partial cds Length = 2072 Score = 180 bits (91), Expect = 2e-42 Identities = 337/419 (80%) Strand = Plus / Plus Query: 7 gagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatt 66 ||||| |||||| |||| || |||||||| ||||| || || || || || |||||||| Sbjct: 1101 gagagtaacaatctgaaggcaatggtcacggcagggtctaagggaagctttattaatata 1160 Query: 67 tcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggt 126 || || |||||||||||||| || ||||| |||||||| || ||||| ||||||| ||| Sbjct: 1161 tctcagatgactgcttgtgttgggcagcaaaatgttgaaggtaagcgtattccatatggg 1220 Query: 127 tttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtggg 186 || | || || || | || || ||||| || |||||||| || || |||||||||||| Sbjct: 1221 ttcatagaccggactcttcctcatttcaccaaggatgactatggacctgaaagtcgtggg 1280 Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 ||||| |||||||| ||||| ||||| |||| || || || || || |||||||| ||| Sbjct: 1281 tttgtggagaactcttacctaagaggtttgacccctcaagagttctttttccatgccatg 1340 Query: 247 ggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaa 306 ||||||||||||||||||||||| ||||| || ||||| || ||||| |||||||| || Sbjct: 1341 ggtggtagagaaggtttgattgacactgcagtcaaaacttctgagactggatatatccag 1400 Query: 307 cggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcgaaat 366 || | || ||||| |||||||| || |||||||| |||||||| ||||| ||| | || Sbjct: 1401 aggcgacttgtgaaagctatggaagatattatggttaaatatgacggtacagttaggaac 1460 Query: 367 tcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtttggat 425 || || || |||||||| | || | ||||| ||||| || ||||||||||||||||| Sbjct: 1461 tcacttggggatgttatccagtttctatatggggaagacggtatggatgctgtttggat 1519
>gb|DQ020644.1| Lycopersicon esculentum RNA polymerase II largest subunit (RPB1) mRNA, partial cds Length = 2319 Score = 172 bits (87), Expect = 6e-40 Identities = 336/419 (80%) Strand = Plus / Plus Query: 7 gagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatt 66 |||||||| ||| | ||||||||||| ||||| || || || || ||||| || || || Sbjct: 1300 gagagcaataatcttaaagctatggttactgctggatcgaagggaagttttatcaacata 1359 Query: 67 tcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggt 126 || ||||||||||| ||||| || || ||||||||||| || || || |||||||||||| Sbjct: 1360 tctcaaatgactgcctgtgtggggcaacagaatgttgaaggaaaacgtattccatttggt 1419 Query: 127 tttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtggg 186 || | || ||||| | || || || || |||||||| || || || ||||||||||| Sbjct: 1420 ttcatagaccgtactcttcctcattttaccaaagatgattatggtccggaaagtcgtggt 1479 Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 ||||| ||||| || || || || || ||||| || || || || ||||||||||||||| Sbjct: 1480 tttgtagagaattcatatctccggggactgaccccgcaagagttcttcttccatgctatg 1539 Query: 247 ggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaa 306 ||||||||||||||| |||||||||||||||||||||| || ||||| || || || || Sbjct: 1540 ggtggtagagaaggtctgattgatactgctgtgaaaacttctgagaccgggtacattcag 1599 Query: 307 cggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcgaaat 366 || || | |||||||| |||||||| || ||||| || ||||| || |||||| | ||| Sbjct: 1600 aggcggttagtgaaggccatggaggatatcatggtcaagtatgacggcactgttaggaat 1659 Query: 367 tcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtttggat 425 || |||| ||||| || | || ||||||| |||||||| |||||| |||||||||| Sbjct: 1660 tcattgggggatgtaatccagtttctgtatggggaagatgggatggattctgtttggat 1718
>gb|AY490553.1| Ginkgo biloba RNA polymerase II large subunit (rpb1) mRNA, partial cds Length = 3039 Score = 172 bits (87), Expect = 6e-40 Identities = 336/419 (80%) Strand = Plus / Plus Query: 7 gagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatt 66 ||||| || |||||||| || ||||| || || || |||||||| ||||| ||||| || Sbjct: 2035 gagagtaataatttgaaggcaatggttacagctgggtcaaaaggaagttttattaacata 2094 Query: 67 tcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggt 126 || || ||||| |||||||| |||||||| |||||||| || ||||| ||||||| ||| Sbjct: 2095 tcacagatgacagcttgtgtgggacagcaaaatgttgaaggaaagcgaattccatatgga 2154 Query: 127 tttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtggg 186 |||| || ||| || | ||||| ||||| || |||||| | || || ||||||||||| Sbjct: 2155 tttgatggtcgaactctaccccatttcacaaaggatgacaatggtcctgaaagtcgtggt 2214 Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 ||||| || ||||| || || || || || || || ||||| || || || || || ||| Sbjct: 2215 tttgtggaaaactcttatctgcgtggacttactccccaggagttcttttttcacgcaatg 2274 Query: 247 ggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaa 306 || ||| ||||||||||||| || ||||||||||||||||| ||||| || || ||||| Sbjct: 2275 ggaggtcgagaaggtttgatagacactgctgtgaaaacctctgagacagggtacatacag 2334 Query: 307 cggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcgaaat 366 || | || || |||||||||||||| || ||||| || |||||||| || || | ||| Sbjct: 2335 aggcgtcttgtaaaggctatggaggatatcatggttaagtatgatgggacggtcaggaat 2394 Query: 367 tcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtttggat 425 ||||| || ||||||||| |||| | ||||| |||||||| ||||||||||||||||| Sbjct: 2395 tcgctaggcgatgttattcaatttctctatggtgaagatggtatggatgctgtttggat 2453
>gb|AF519534.1| Zamia muricata RNA polymerase II largest subunit (RPB1) mRNA, partial cds Length = 3039 Score = 159 bits (80), Expect = 9e-36 Identities = 332/416 (79%) Strand = Plus / Plus Query: 10 agcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatttcg 69 ||||| |||||||| || ||||||||||| ||||||||||| || || |||||||| || Sbjct: 2038 agcaataatttgaaggcaatggtcactgctggctcaaaaggaagctttattaatatatca 2097 Query: 70 caaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggtttt 129 ||||||||||||||||| |||||||| |||||||| || || |||||||||||||| || Sbjct: 2098 caaatgactgcttgtgtgggacagcaaaatgttgaagggaaacggattccatttggactt 2157 Query: 130 gttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtgggttt 189 ||| || | | ||||| ||||| | ||||| || || || ||||||||||| ||| Sbjct: 2158 tttgggcgatccctaccccatttcacaagggatgattatggtcctgaaagtcgtggtttt 2217 Query: 190 gttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatgggt 249 || || || || || || || || || ||||| || || || || ||||| || |||||| Sbjct: 2218 gtggaaaattcttatctccgtggcctaacaccgcaagagttctttttccacgcaatgggt 2277 Query: 250 ggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaacgg 309 ||| |||||||| |||| ||||||||||||||||| || || || || ||||| || || Sbjct: 2278 ggtcgagaaggtctgatagatactgctgtgaaaacttcagaaacagggtatattcagagg 2337 Query: 310 aggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcgaaattcg 369 | || || ||||||||||||||||| ||||| ||||| ||||| || || | || || Sbjct: 2338 cgtcttgtaaaggctatggaggacatcatggttaaatacgatgggacggtcaggaactca 2397 Query: 370 ctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtttggat 425 | || ||||||||| |||| | || || |||||||| ||||||||||||||||| Sbjct: 2398 ttaggcgatgttattcaatttctctacggggaagatggtatggatgctgtttggat 2453
>gb|AF519537.1| Welwitschia mirabilis RNA polymerase II largest subunit (RPB1) mRNA, partial cds Length = 3039 Score = 157 bits (79), Expect = 4e-35 Identities = 334/419 (79%) Strand = Plus / Plus Query: 7 gagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatt 66 ||||| || ||| |||| || ||||| || ||||| || ||||| ||||| || |||||| Sbjct: 2035 gagagtaataatctgaaggcaatggttacagcagggtctaaaggaagttttatcaatatt 2094 Query: 67 tcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggt 126 || || |||||||||||||| || ||||| |||||||| || || |||||||| | ||| Sbjct: 2095 tcccagatgactgcttgtgtggggcagcaaaatgttgaaggtaaacggattccttatggc 2154 Query: 127 tttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtggg 186 || || | ||| |||| || ||||| || |||||| | || || || || ||||| Sbjct: 2155 ttcaatgggaggacactgcctcatttcacaaaggatgacaagggtccagagagccgtggt 2214 Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 ||||| |||||||| || ||||| || |||| || ||||| || || |||||||||||| Sbjct: 2215 tttgtggagaactcttatcttcgtggattgactcctcaggagttctttttccatgctatg 2274 Query: 247 ggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaa 306 || |||||||||||||| || |||||||||||||| || || || || || || || ||| Sbjct: 2275 ggaggtagagaaggtttaatagatactgctgtgaagacttcagaaacaggttacatccaa 2334 Query: 307 cggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcgaaat 366 | | || || |||||||||||||| |||||||| ||||||||||| ||||| |||| Sbjct: 2335 agacgtcttgtaaaggctatggaggatattatggttaaatatgatggcactgtgagaaac 2394 Query: 367 tcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtttggat 425 || || |||||||||| | || |||||||||||||| |||||||||||||| ||||| Sbjct: 2395 tcccttggtgatgttacccagtttttgtatggagaagacggcatggatgctgtctggat 2453
>gb|DQ020643.1| Antirrhinum majus RNA polymerase II largest subunit (RPB1) mRNA, partial cds Length = 2342 Score = 139 bits (70), Expect = 8e-30 Identities = 298/374 (79%) Strand = Plus / Plus Query: 52 agtttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaag 111 ||||| ||||| || || || ||||||||||||||||| |||||||||||||| |||||| Sbjct: 1345 agttttattaacatatctcagatgactgcttgtgtcgggcagcagaatgttgaaggcaag 1404 Query: 112 cggattccatttggttttgttgatcgtacattgccccacttcacgaaagatgactacggc 171 || ||||| ||||| || | |||||||| ||||| || ||||| || ||||| || || Sbjct: 1405 cgaattccttttggattcatagatcgtaccttgcctcatttcaccaaggatgattatggt 1464 Query: 172 cccgaaagtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaattt 231 || || |||||||||||||| |||||||| || ||| | || |||| || || || || Sbjct: 1465 cctgagagtcgtgggtttgtagagaactcatatcttaggggcttgactcctcaagagttc 1524 Query: 232 ttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgag 291 |||||||| || ||||| || | |||||| | |||||||||||||| ||||| || ||| Sbjct: 1525 ttcttccacgcgatgggggggcgggaaggtctaattgatactgctgtcaaaacttctgag 1584 Query: 292 acgggatatatacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgat 351 ||||| ||||| || | | | ||||| || |||||||| || ||||| || |||||| Sbjct: 1585 acggggtatattcagagacgattggtgaaagccatggaggatatcatggtcaagtatgat 1644 Query: 352 ggtactgttcgaaattcgctgggtgatgttatttaattcttgtatggagaagatggcatg 411 || ||||| | |||||| |||| ||||| ||| | || | || || |||||||||||| Sbjct: 1645 ggaactgtcaggaattcgttgggagatgtgattcagtttctttacggggaagatggcatg 1704 Query: 412 gatgctgtttggat 425 ||||| |||||||| Sbjct: 1705 gatgccgtttggat 1718
>gb|AF519536.1| Pinus nigra RNA polymerase II largest subunit (RPB1) mRNA, partial cds Length = 3039 Score = 125 bits (63), Expect = 1e-25 Identities = 330/419 (78%) Strand = Plus / Plus Query: 7 gagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatt 66 ||||| || |||||||| || ||||| || || || |||||||| ||||| ||||| || Sbjct: 2035 gagagtaataatttgaaggcaatggttacagccgggtcaaaaggaagttttattaacata 2094 Query: 67 tcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggt 126 || ||||||||||||||||| ||||| || ||||| || || || || ||||| | ||| Sbjct: 2095 tcacaaatgactgcttgtgtgggacaacaaaatgtagaaggaaaacgaattccttatgga 2154 Query: 127 tttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtggg 186 |||| | ||| || | ||||| || || || ||||| | || || ||||||||||| Sbjct: 2155 tttgacggtcgaactcttccccattttacaaaggatgataaaggtccagaaagtcgtggt 2214 Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 ||||| |||||||| || ||||| || ||||| || ||||| || || || || || ||| Sbjct: 2215 tttgtggagaactcttatcttcgtggcctgactccccaggagttcttttttcacgcaatg 2274 Query: 247 ggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaa 306 || ||||||||||| ||||| || ||||||||||| || || || || || || ||||| Sbjct: 2275 ggaggtagagaagggttgatagacactgctgtgaagacttcggaaacaggttacatacag 2334 Query: 307 cggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcgaaat 366 || | || || ||||| |||||||| || ||||| |||||||| || ||||| | || Sbjct: 2335 aggcgtcttgtaaaggcaatggaggatatcatggttaaatatgacgggactgtcaggaac 2394 Query: 367 tcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtttggat 425 || || |||||||||||| |||| | ||||| |||||||| ||||||||||||||||| Sbjct: 2395 tcacttggtgatgttattcaatttctatatggtgaagatggtatggatgctgtttggat 2453
>ref|XM_480164.1| Oryza sativa (japonica cultivar-group), mRNA Length = 757 Score = 123 bits (62), Expect = 5e-25 Identities = 80/86 (93%) Strand = Plus / Plus Query: 70 caaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggtttt 129 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 1 caaatgactgcttgtgtcggacagcagaatgttgagggcaagcggatcccatttggcttc 60 Query: 130 gttgatcgtacattgccccacttcac 155 ||||||| || |||||||||||||| Sbjct: 61 attgatcgaacgttgccccacttcac 86
>gb|AY437922.1| Zea mays RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1133 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 1 ttgtctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcatt 60 |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 1056 ttgtctgaaagcaacaatttgaaggctatggtcactgcaggttcaaaaggcagtttcatt 1115 Query: 61 aatatttcgcaaatgact 78 || ||||| ||||||||| Sbjct: 1116 aacatttcacaaatgact 1133
>dbj|AK062907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F11, full insert sequence Length = 757 Score = 115 bits (58), Expect = 1e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 70 caaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggtttt 129 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 1 caaatgactgcttgtgtcggacagcagaatgttgagggcaagcggatcccatttggcttc 60 Query: 130 gttgatcgtacattgccccacttcac 155 | ||||| || |||||||||||||| Sbjct: 61 atcgatcgaacgttgccccacttcac 86
>gb|AY490551.1| Taxus canadensis RNA polymerase II large subunit (rpb1) mRNA, partial cds Length = 3039 Score = 115 bits (58), Expect = 1e-22 Identities = 205/254 (80%) Strand = Plus / Plus Query: 172 cccgaaagtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaattt 231 ||||||||||| || ||||| ||||| || || || || ||| |||| || ||||| || Sbjct: 2200 cccgaaagtcgaggctttgtggagaattcttatctgcgtggtttgactccgcaggagttc 2259 Query: 232 ttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgag 291 || |||||||| ||||| ||| | ||||||||||| |||||||| |||||||| || || Sbjct: 2260 tttttccatgcaatgggaggtcgtgaaggtttgatagatactgcagtgaaaacatcagaa 2319 Query: 292 acgggatatatacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgat 351 || || || ||||| || | || |||||||| ||||||||||||||||| ||||||||| Sbjct: 2320 acaggctacatacagcgccgtcttgtgaaggccatggaggacattatggttaaatatgat 2379 Query: 352 ggtactgttcgaaattcgctgggtgatgttatttaattcttgtatggagaagatggcatg 411 || ||||| | |||||||| || || || || | || ||||||| || ||||| ||| Sbjct: 2380 gggactgtcaggaattcgcttggcgacgtcatccagtttctgtatggggaggatggtatg 2439 Query: 412 gatgctgtttggat 425 |||||||||||||| Sbjct: 2440 gatgctgtttggat 2453 Score = 95.6 bits (48), Expect = 1e-16 Identities = 99/116 (85%) Strand = Plus / Plus Query: 4 tctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaat 63 |||||||| || |||||||| |||||||| ||||| || |||||||| ||||| ||||| Sbjct: 2032 tctgagagtaataatttgaaggctatggttactgctgggtcaaaaggaagttttattaac 2091 Query: 64 atttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattcc 119 || || ||||||||||||||||| |||||||| ||||| || || ||||| ||||| Sbjct: 2092 atatcacaaatgactgcttgtgtgggacagcaaaatgtggaaggaaagcgaattcc 2147
>emb|X52495.1|GMRPB1C Soybean RPB1-C gene for largest subunit of RNA polymerase II Length = 4153 Score = 109 bits (55), Expect = 7e-21 Identities = 148/179 (82%) Strand = Plus / Plus Query: 175 gaaagtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttc 234 ||||||||||| ||||| |||||||| || || || || ||||| || || || || || Sbjct: 13 gaaagtcgtggctttgtggagaactcatatctacgtggactgacccctcaagagttcttt 72 Query: 235 ttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacg 294 |||||||| ||||||||||| |||||| | ||||||||||| ||||| |||||||| || Sbjct: 73 ttccatgccatgggtggtagggaaggtcttattgatactgccgtgaagacctccgaaacc 132 Query: 295 ggatatatacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatgg 353 || || || || || | ||||||||||||||||||||||| ||| | ||||||||||| Sbjct: 133 gggtacattcagaggcgactcgtgaaggctatggaggacatcatgcttaaatatgatgg 191
>gb|AY490550.1| Thuja occidentalis RNA polymerase II large subunit (rpb1) mRNA, partial cds Length = 3039 Score = 109 bits (55), Expect = 7e-21 Identities = 109/127 (85%) Strand = Plus / Plus Query: 4 tctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaat 63 |||||||| ||||||||||| |||||||| ||||| || || ||||| ||||||||||| Sbjct: 2032 tctgagagtaacaatttgaaggctatggttactgctgggtccaaaggaagtttcattaac 2091 Query: 64 atttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccattt 123 || || ||||||||||||||||| |||||||| ||||| || || ||||| ||||||| | Sbjct: 2092 atatctcaaatgactgcttgtgtgggacagcaaaatgtagaagggaagcgaattccatat 2151 Query: 124 ggttttg 130 || |||| Sbjct: 2152 ggatttg 2158 Score = 101 bits (51), Expect = 2e-18 Identities = 192/239 (80%) Strand = Plus / Plus Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 ||||| ||||| ||||| || || ||| |||| || ||||| || || || ||||| ||| Sbjct: 2215 tttgtggagaattcctatctgcgtggtttgactcctcaggagttcttttttcatgcaatg 2274 Query: 247 ggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaa 306 || || | ||||||||||| |||||||| |||||||| || || || ||||| ||||| Sbjct: 2275 ggagggcgtgaaggtttgatagatactgcagtgaaaacgtcagaaacaggatacatacag 2334 Query: 307 cggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcgaaat 366 || | || ||||| |||||||||||||| ||||| || |||||||| ||||| | ||| Sbjct: 2335 cgccgtcttgtgaaagctatggaggacatcatggttaagtatgatgggactgtcaggaat 2394 Query: 367 tcgctgggtgatgttatttaattcttgtatggagaagatggcatggatgctgtttggat 425 || || || ||||| ||| | ||| ||||||| || ||||| ||||||||||||||||| Sbjct: 2395 tcacttggcgatgtcattcagttcctgtatggcgaggatggtatggatgctgtttggat 2453
>gb|DQ294604.1| Scutellospora heterogama isolate AFTOL-ID-138 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1979 Score = 109 bits (55), Expect = 7e-21 Identities = 202/251 (80%) Strand = Plus / Plus Query: 58 attaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggatt 117 |||||||||||||||||||| ||||||||||| || |||||||||||||| || || || Sbjct: 1644 attaatatttcgcaaatgacggcttgtgtcggtcaacagaatgttgagggtaaacgtata 1703 Query: 118 ccatttggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaa 177 ||||| || ||| || || ||||| || || ||||||||||| | |||| ||| Sbjct: 1704 ccattcggatttaaattccgcaccttgccacattttacgaaagatgatcatagcccagaa 1763 Query: 178 agtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttc 237 |||||||| ||||| || || | || ||||| || | || ||||||||||||||||| Sbjct: 1764 agtcgtggatttgtcgaaaattgttatcttcgtggcttaactccacaggaatttttcttt 1823 Query: 238 catgctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacggga 297 || ||||||||||| | ||||||||||| ||||||||||| |||||| |||| || || Sbjct: 1824 cacgctatgggtggacgtgaaggtttgatcgatactgctgtaaaaaccgccgaaactggt 1883 Query: 298 tatatacaacg 308 ||||| ||||| Sbjct: 1884 tatattcaacg 1894
>gb|U90210.1|SSU90210 Spirogyra sp. RNA polymerase II largest subunit (rpb1) gene, partial cds Length = 2411 Score = 101 bits (51), Expect = 2e-18 Identities = 273/347 (78%) Strand = Plus / Plus Query: 7 gagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatt 66 ||||||||||| | ||||| ||||| ||||| || |||||||| ||||| || || Sbjct: 1371 gagagcaacaacgtcaaagccatggtgactgcgggatcaaaaggttccttcatcaacatc 1430 Query: 67 tcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggt 126 || ||||||| ||||||||| || ||||||||||| || || ||||| || || ||||| Sbjct: 1431 tctcaaatgattgcttgtgtggggcagcagaatgtggaaggaaagcgtatcccctttggc 1490 Query: 127 tttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtggg 186 ||||| ||||| || | ||||| ||||| || || || || || || || || | ||| Sbjct: 1491 tttgtcgatcgcacgcttccccatttcaccaaggacgattatgggccagagagcagaggg 1550 Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 || || |||||||| || || |||| || || || ||||| |||||||||||||||||| Sbjct: 1551 ttcgtggagaactcttatctgagaggactcactccccaggagtttttcttccatgctatg 1610 Query: 247 ggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaa 306 || || ||||||||| | || || ||||||||||| || ||||| || ||||| || ||| Sbjct: 1611 ggaggaagagaaggtctcatcgacactgctgtgaagacatccgaaactggatacatccaa 1670 Query: 307 cggaggctcgtgaaggctatggaggacattatggtgaaatatgatgg 353 || | || ||||| || ||||||||| ||||||| || |||||||| Sbjct: 1671 cgtcgtctggtgaaagccatggaggacgttatggtcaagtatgatgg 1717
>gb|U90037.3|LPU90037 Limulus polyphemus RNA polymerase II largest subunit mRNA, partial cds Length = 2334 Score = 95.6 bits (48), Expect = 1e-16 Identities = 54/56 (96%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 1096 tttttcttccatgctatgggtggtagagaaggtttaattgatactgctgtaaaaac 1151
>gb|AF138975.2| Carcinoscorpius rotundicauda RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 1e-16 Identities = 54/56 (96%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 887 tttttcttccatgctatgggtggtagagaaggtttaattgatactgctgtaaaaac 942
>gb|AF395835.1| Cercomonas ATCC50319 RNA polymerase II largest subunit gene, partial cds Length = 3258 Score = 93.7 bits (47), Expect = 4e-16 Identities = 161/199 (80%) Strand = Plus / Plus Query: 217 acaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgct 276 |||||||| ||||| ||||||||||||||||||||| | |||||| | |||||||||||| Sbjct: 2444 acaccacaagaattcttcttccatgctatgggtggtcgtgaaggtcttattgatactgct 2503 Query: 277 gtgaaaacctccgagacgggatatatacaacggaggctcgtgaaggctatggaggacatt 336 || || || | || || || ||||| ||||| | || || ||||||||||| || || Sbjct: 2504 gtcaagactgctgaaactggttatattcaacgtcgtcttgtcaaggctatggaagatgtt 2563 Query: 337 atggtgaaatatgatggtactgttcgaaattcgctgggtgatgttatttaattcttgtat 396 ||| | |||||||||| ||||||||| || || || |||||| | ||| ||||| ||| Sbjct: 2564 atgatcaaatatgatgctactgttcgtaactctcttggtgatatcattcaattcgcatat 2623 Query: 397 ggagaagatggcatggatg 415 || |||||||| ||||||| Sbjct: 2624 ggtgaagatggtatggatg 2642
>gb|AY490554.1| Ephedra viridis RNA polymerase II large subunit (rpb1) mRNA, partial cds Length = 3039 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 4 tctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaat 63 ||||||||||| ||||||||||| ||||| ||||| || |||||||| ||||| || ||| Sbjct: 2032 tctgagagcaataatttgaaagccatggttactgctggttcaaaaggaagttttatcaat 2091 Query: 64 atttcgcaaatgactgcttgtgtcggacagcagaatgt 101 || || || |||||||||||||| |||||||| ||||| Sbjct: 2092 atatcacagatgactgcttgtgtgggacagcaaaatgt 2129 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 178 agtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttc 237 |||||||| ||||| || ||||| || ||||| ||| | || || ||||| || ||||| Sbjct: 2206 agtcgtggttttgtagaaaactcttatcttcggggtttaactcctcaggagttcttcttt 2265 Query: 238 catgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||||||||| || |||||||||| || ||||||||||| Sbjct: 2266 catgctatgggagggcgagaaggtttaatagatactgctgt 2306 Score = 46.1 bits (23), Expect = 0.092 Identities = 77/95 (81%) Strand = Plus / Plus Query: 325 atggaggacattatggtgaaatatgatggtactgttcgaaattcgctgggtgatgttatt 384 ||||||||||| ||||| |||||||||| || ||| | || || || |||||||| || Sbjct: 2353 atggaggacatcatggttaaatatgatgcaacagttaggaactcccttggtgatgtaata 2412 Query: 385 taattcttgtatggagaagatggcatggatgctgt 419 | || | || ||||||||||||||||||||||| Sbjct: 2413 cagtttctatacggagaagatggcatggatgctgt 2447
>gb|U10336.1|HSU10336 Helobdella stagnalis RNA polymerase II largest subunit mRNA, partial cds Length = 4011 Score = 85.7 bits (43), Expect = 1e-13 Identities = 46/47 (97%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatac 272 ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2224 gaatttttcttccatgctatgggtggtagggaaggtttgattgatac 2270
>ref|XM_456921.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A14036g) partial mRNA Length = 5250 Score = 83.8 bits (42), Expect = 4e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 215 tgacaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactg 274 |||| ||||| |||||||||||||||||||||| |||||||||||| | |||||||||| Sbjct: 2438 tgactccacaagaatttttcttccatgctatggcaggtagagaaggtcttattgatactg 2497 Query: 275 ctgtgaaaacctccgagacgggatatatacaacg 308 |||| || ||| |||| || || ||||| ||||| Sbjct: 2498 ctgttaagaccgccgaaacaggttatattcaacg 2531 Score = 52.0 bits (26), Expect = 0.001 Identities = 89/110 (80%) Strand = Plus / Plus Query: 58 attaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggatt 117 ||||||||||| |||||| | |||||||| ||||| || | ||||| || || || ||| Sbjct: 2281 attaatatttctcaaatgtcagcttgtgtaggacaacaaatcgttgaaggtaaacgtatt 2340 Query: 118 ccatttggttttgttgatcgtacattgccccacttcacgaaagatgacta 167 || ||||| |||| ||||||| | || || || ||||| ||||||||||| Sbjct: 2341 ccttttggatttgctgatcgttcgttacctcatttcacaaaagatgacta 2390
>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii Length = 1249565 Score = 83.8 bits (42), Expect = 4e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 215 tgacaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactg 274 |||| ||||| |||||||||||||||||||||| |||||||||||| | |||||||||| Sbjct: 1142575 tgactccacaagaatttttcttccatgctatggcaggtagagaaggtcttattgatactg 1142516 Query: 275 ctgtgaaaacctccgagacgggatatatacaacg 308 |||| || ||| |||| || || ||||| ||||| Sbjct: 1142515 ctgttaagaccgccgaaacaggttatattcaacg 1142482 Score = 52.0 bits (26), Expect = 0.001 Identities = 89/110 (80%) Strand = Plus / Minus Query: 58 attaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggatt 117 ||||||||||| |||||| | |||||||| ||||| || | ||||| || || || ||| Sbjct: 1142732 attaatatttctcaaatgtcagcttgtgtaggacaacaaatcgttgaaggtaaacgtatt 1142673 Query: 118 ccatttggttttgttgatcgtacattgccccacttcacgaaagatgacta 167 || ||||| |||| ||||||| | || || || ||||| ||||||||||| Sbjct: 1142672 ccttttggatttgctgatcgttcgttacctcatttcacaaaagatgacta 1142623
>gb|DQ294605.1| Synchytrium macrosporum isolate AFTOL-ID-635 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 2698 Score = 81.8 bits (41), Expect = 2e-12 Identities = 161/201 (80%) Strand = Plus / Plus Query: 180 tcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttcca 239 |||||| |||||||| ||||| ||||| |||||| |||| |||||||| || ||||| || Sbjct: 2465 tcgtggatttgttgaaaactcttacctacgaggtttgaccccacaggagttcttctttca 2524 Query: 240 tgctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacgggata 299 |||||||||||| | || || |||||||| ||||| || || ||| | || || || || Sbjct: 2525 cgctatgggtggtcgtgagggattgattgacactgccgttaagaccgctgaaaccgggta 2584 Query: 300 tatacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgt 359 ||| ||||| | || || ||||| |||| || | ||||||||||||||||||||||| Sbjct: 2585 tattcaacgtcgtctggttaaggccttggaagatgtcatggtgaaatatgatggtactgt 2644 Query: 360 tcgaaattcgctgggtgatgt 380 || ||| ||| ||| ||||| Sbjct: 2645 acggaatgcgcagggagatgt 2665
>ref|XM_636643.1| Dictyostelium discoideum RNA polymerase II core subunit (DDB0215406), partial mRNA Length = 5184 Score = 79.8 bits (40), Expect = 7e-12 Identities = 214/272 (78%) Strand = Plus / Plus Query: 13 aacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatttcgcaa 72 |||||||| || || ||||| |||||||| |||||||| |||||| ||||| || || Sbjct: 2248 aacaatttaaaggcgatggtaactgcaggttcaaaaggttctttcatcaatatctcacag 2307 Query: 73 atgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggttttgtt 132 |||| |||||||| || || || ||||| || || || || |||||||||||||| Sbjct: 2308 atgatggcttgtgtaggtcaacaaaatgtcgaaggtaaacgtattccatttggtttccaa 2367 Query: 133 gatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtgggtttgtt 192 | | ||||| || || ||||| || ||||| || || || || |||||||| || || Sbjct: 2368 agtagaacattaccacatttcaccaaggatgattatggtccagagagtcgtggtttcgta 2427 Query: 193 gagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatgggtggt 252 ||||| || || ||||| ||| | || || || ||||| || |||||||||||||||||| Sbjct: 2428 gagaattcatatcttcgtggtttaactcctcaagaattctttttccatgctatgggtggt 2487 Query: 253 agagaaggtttgattgatactgctgtgaaaac 284 ||||||||||| ||||||||||| || ||||| Sbjct: 2488 agagaaggtttaattgatactgccgtaaaaac 2519
>gb|DQ294583.1| Batrachochytrium dendrobatidis isolate AFTOL-ID-21 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 3009 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 54 tttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcg 113 ||||||||||||||| |||||||| |||||||| |||||||| || ||||| || ||||| Sbjct: 2069 tttcattaatatttctcaaatgacagcttgtgttggacagcaaaacgttgaaggaaagcg 2128 Query: 114 gattccatttggtttt 129 ||||| ||||||||| Sbjct: 2129 tattccttttggtttt 2144 Score = 40.1 bits (20), Expect = 5.7 Identities = 47/56 (83%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||||||| || |||||||||||| | |||||| | || |||||||| || ||||| Sbjct: 2244 tttttctttcacgctatgggtggtcgtgaaggtcttatcgatactgccgtcaaaac 2299
>gb|AF138977.2| Eurytemora affinis RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 77.8 bits (39), Expect = 3e-11 Identities = 106/129 (82%) Strand = Plus / Plus Query: 234 cttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagac 293 |||||| |||||||| || ||||||||||| |||||||||||||| ||||| | || || Sbjct: 892 cttccacgctatgggaggaagagaaggtttaattgatactgctgtcaaaactgcagaaac 951 Query: 294 gggatatatacaacggaggctcgtgaaggctatggaggacattatggtgaaatatgatgg 353 |||||||| || || |||||| | ||||||||||||| ||||||||| || || || Sbjct: 952 tggatatattcagcgtaggctcatcaaggctatggaggcytgtatggtgaactacgacgg 1011 Query: 354 tactgttcg 362 ||| ||||| Sbjct: 1012 tacagttcg 1020
>gb|AY305541.1| Allopauropus proximus clone AprApol RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaacctcc 288 ||||||||||| |||||||||||| | ||||||||||| ||||||||||| |||||| || Sbjct: 887 tttttcttccacgctatgggtggtcgtgaaggtttgatcgatactgctgtaaaaaccgcc 946 Query: 289 ga 290 || Sbjct: 947 ga 948
>ref|XM_447415.1| Candida glabrata CBS138 hypothetical protein (CAGL0I03828g) partial mRNA Length = 5148 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Plus Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 |||||||||||||| || | ||||||| || ||||| || ||||||||||| |||||| Sbjct: 2395 tttgttgagaactcatatttaagaggtctaactccacaagagtttttcttccacgctatg 2454 Query: 247 ggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||||| | |||||||| |||||||| ||||| ||||| Sbjct: 2455 ggtggtcgtgaaggtttaattgatacagctgttaaaac 2492
>ref|XM_501909.1| Yarrowia lipolytica CLIB122, YALI0C16566g predicted mRNA Length = 5166 Score = 75.8 bits (38), Expect = 1e-10 Identities = 155/194 (79%) Strand = Plus / Plus Query: 191 ttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatgggtg 250 |||| ||||| || || ||||||||||| || |||||||| || ||||| || |||| | Sbjct: 2327 ttgaaaactcgtatctgcgaggtctgactcctcaggaattctttttccacgccatggccg 2386 Query: 251 gtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaacgga 310 || |||| ||| |||||||||| || || || || ||||||| ||||| || || || Sbjct: 2387 gtcgagagggtctgattgatacggccgtcaagactgccgagactggatacattcagcgac 2446 Query: 311 ggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcgaaattcgc 370 | || || ||||| |||||||| |||||||| | ||||| |||||||||||||| |||| Sbjct: 2447 gtctggtcaaggccctggaggacgttatggtgcagtatgacggtactgttcgaaactcgc 2506 Query: 371 tgggtgatgttatt 384 | ||||| |||||| Sbjct: 2507 ttggtgacgttatt 2520 Score = 46.1 bits (23), Expect = 0.092 Identities = 38/43 (88%) Strand = Plus / Plus Query: 55 ttcattaatatttcgcaaatgactgcttgtgtcggacagcaga 97 |||||||| |||||||||||| | || |||||||| ||||||| Sbjct: 2191 ttcattaacatttcgcaaatgtcggcgtgtgtcggtcagcaga 2233
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 |||||||||||||| || | ||||||| || ||||| || ||||||||||| |||||| Sbjct: 331675 tttgttgagaactcatatttaagaggtctaactccacaagagtttttcttccacgctatg 331616 Query: 247 ggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||||| | |||||||| |||||||| ||||| ||||| Sbjct: 331615 ggtggtcgtgaaggtttaattgatacagctgttaaaac 331578
>gb|DQ294603.1| Glomus intraradices isolate AFTOL-ID-845 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1833 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 55 ttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcgg 114 ||||||||||| || ||||||||||||||||| ||||||||||| |||||||| || || Sbjct: 1654 ttcattaatatctctcaaatgactgcttgtgttggacagcagaacgttgagggtaaacgt 1713 Query: 115 attccatttggttt 128 || || |||||||| Sbjct: 1714 ataccttttggttt 1727
>gb|DQ294582.1| Rozella allomycis isolate AFTOL-ID-297 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 2545 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 215 tgacaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatac 272 |||||||||| |||||||| |||||||||||||| || |||||||| ||||||||||| Sbjct: 1691 tgacaccacaagaattttttttccatgctatgggaggaagagaagggttgattgatac 1748 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 393 gtatggagaagatggcatggatgc 416 ||||||||||||||| |||||||| Sbjct: 1869 gtatggagaagatgggatggatgc 1892
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 75.8 bits (38), Expect = 1e-10 Identities = 155/194 (79%) Strand = Plus / Minus Query: 191 ttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatgggtg 250 |||| ||||| || || ||||||||||| || |||||||| || ||||| || |||| | Sbjct: 2338095 ttgaaaactcgtatctgcgaggtctgactcctcaggaattctttttccacgccatggccg 2338036 Query: 251 gtagagaaggtttgattgatactgctgtgaaaacctccgagacgggatatatacaacgga 310 || |||| ||| |||||||||| || || || || ||||||| ||||| || || || Sbjct: 2338035 gtcgagagggtctgattgatacggccgtcaagactgccgagactggatacattcagcgac 2337976 Query: 311 ggctcgtgaaggctatggaggacattatggtgaaatatgatggtactgttcgaaattcgc 370 | || || ||||| |||||||| |||||||| | ||||| |||||||||||||| |||| Sbjct: 2337975 gtctggtcaaggccctggaggacgttatggtgcagtatgacggtactgttcgaaactcgc 2337916 Query: 371 tgggtgatgttatt 384 | ||||| |||||| Sbjct: 2337915 ttggtgacgttatt 2337902 Score = 46.1 bits (23), Expect = 0.092 Identities = 38/43 (88%) Strand = Plus / Minus Query: 55 ttcattaatatttcgcaaatgactgcttgtgtcggacagcaga 97 |||||||| |||||||||||| | || |||||||| ||||||| Sbjct: 2338231 ttcattaacatttcgcaaatgtcggcgtgtgtcggtcagcaga 2338189
>gb|AF241005.2|AH010439S1 Hadrurus arizonensis RNA polymerase II largest subunit mRNA, partial cds Length = 1630 Score = 71.9 bits (36), Expect = 2e-09 Identities = 115/142 (80%) Strand = Plus / Plus Query: 143 tgccccacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcct 202 |||||||||||| ||||||||| | || || |||||| | || |||||||| || || | Sbjct: 801 tgccccacttcatcaaagatgacaatggtccagaaagtagaggatttgttgaaaattcgt 860 Query: 203 accttcgaggtctgacaccacaggaatttttcttccatgctatgggtggtagagaaggtt 262 ||||| || || |||||| ||||||||||| ||||| |||||||| | |||||| Sbjct: 861 accttgccggactsacaccatcagaatttttctttcatgccatgggtggacgtgaaggtc 920 Query: 263 tgattgatactgctgtgaaaac 284 | |||||||||||||||||||| Sbjct: 921 ttattgatactgctgtgaaaac 942
>gb|AF241010.2|AH010441S1 Heterometrus spinifer RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 157 aaagatgactacggccccgaaagtcgtgggtttgttgagaactcctaccttcgaggtctg 216 ||||||||| | || || |||||| | ||||||||||| || || |||||| ||||| Sbjct: 815 aaagatgacaatggtccagaaagtagagggtttgttgaaaattcataccttgctggtctt 874 Query: 217 acaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgct 276 || ||| ||||||||||| |||||||||||||| | |||||| | |||||||||||| Sbjct: 875 accccatcagaatttttctttcatgctatgggtggacgtgaaggtcttattgatactgct 934 Query: 277 gtgaaaac 284 |||||||| Sbjct: 935 gtgaaaac 942 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 tatgatggtactgttcgaaa 365 |||||||||||||||||||| Sbjct: 1004 tatgatggtactgttcgaaa 1023
>gb|U90040.2|PAU90040 Periplaneta americana RNA polymerase II largest subunit mRNA, partial cds Length = 1405 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||||| |||||||| |||||||||||| | || ||||||||||||||||| Sbjct: 662 tttttcttccacgctatgggaggtagagaaggtctcatcgatactgctgtgaaaac 717
>gb|DQ223185.1| Glaucocystis nostochinearum strain UTEX-B 1929 DNA-dependent RNA polymerase II largest subunit (RPB1) gene, complete cds Length = 9936 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 163 gactacggccccgaaagtcgtgggtttgttgagaactcctaccttcgaggtctgacacca 222 |||||||||||||| ||| || || || |||||||| || || || || ||||| ||| Sbjct: 6374 gactacggccccgagtctcgaggcttcgtggagaactcgtatctgcgcggactgacgcca 6433 Query: 223 caggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaa 282 ||||| ||||||||||| || |||||||| |||||||| | || || ||||||||||| Sbjct: 6434 caggagtttttcttccacgccatgggtgggcgagaaggtcttatcgacactgctgtgaag 6493 Query: 283 acctccgagacgggatatat 302 ||||| || || |||||||| Sbjct: 6494 acctctgaaaccggatatat 6513
>gb|DQ294600.1| Rhizophydium macroporosum isolate AFTOL-ID-689 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 3057 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 223 caggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 |||||||| || ||||| || ||||||||||||||||| ||||||||||||||||| Sbjct: 2263 caggaattctttttccacgcgatgggtggtagagaagggttgattgatactgctgt 2318
>gb|AY305599.1| Orchesella imitari clone OimApol RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 69.9 bits (35), Expect = 6e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||| ||| || |||||||| ||| ||||||||||||||||||||||||| ||||| Sbjct: 884 gaattttactttcacgctatgggaggtcgagaaggtttgattgatactgctgtcaaaac 942
>gb|AY305548.1| Armadillidium vulgare clone Avu2Apol RNA polymerase II largest subunit mRNA, partial cds Length = 2209 Score = 69.9 bits (35), Expect = 6e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||| |||||||| ||||||||| | ||||||||||||||||||||||| ||||| Sbjct: 884 gaattttatttccatgccatgggtggtcgtgaaggtttgattgatactgctgtaaaaac 942
>emb|CR932237.1|CNS0KYIS DNA-directed RNA polymerase II largest subunit, Paramecium tetraurelia macronuclear gene Length = 5507 Score = 69.9 bits (35), Expect = 6e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||| || |||||| |||||||||||||||| ||| |||||||||||||||| ||||| Sbjct: 2578 gaattctttttccatactatgggtggtagagatggtctgattgatactgctgtcaaaac 2636
>gb|AY858961.2| Hygrophoropsis aurantiaca isolate AFTOL-ID 714 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 3804 Score = 69.9 bits (35), Expect = 6e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 190 gttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatgggt 249 ||||| || ||||| ||||| |||||||| |||||||||||||||||||| || |||| | Sbjct: 2980 gttgaaaattcctatcttcgtggtctgactccacaggaatttttcttccacgccatggct 3039 Query: 250 ggtagagaaggtttgattgatac 272 ||| | |||||| |||| ||||| Sbjct: 3040 ggtcgcgaaggtctgatcgatac 3062
>gb|DQ294586.1| Spizellomyces punctatus isolate AFTOL-ID-182 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 2788 Score = 69.9 bits (35), Expect = 6e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 172 cccgaaagtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaattt 231 ||||||||||| || |||||||| ||||| ||| | | ||||||||||| || || ||| Sbjct: 2595 cccgaaagtcgaggttttgttgaaaactcatacttgaggggtctgacaccgcaagagttt 2654 Query: 232 ttcttccatgctatgggtggtagagaaggtttgat 266 ||||||||||| |||||||| | ||||||||||| Sbjct: 2655 ttcttccatgccatgggtggacgtgaaggtttgat 2689 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 64 atttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccattt 123 |||||||||||| | ||||||||||||||||| || ||||| || ||||| || |||||| Sbjct: 2487 atttcgcaaatgtcagcttgtgtcggacagcaaaacgttgaaggaaagcgtataccattt 2546 Query: 124 gg 125 || Sbjct: 2547 gg 2548
>gb|AY860526.1| Marasmius alliaceus isolate AFTOL-ID 556 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1874 Score = 69.9 bits (35), Expect = 6e-09 Identities = 54/65 (83%) Strand = Plus / Plus Query: 217 acaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgct 276 ||||||||||| ||||||||||| || ||||| || | || || ||||||||||| || Sbjct: 1077 acaccacaggagtttttcttccaygckatgggkggdmgggarggyttgattgataccgcc 1136 Query: 277 gtgaa 281 ||||| Sbjct: 1137 gtgaa 1141
>gb|AY305538.1| Anopsobius neozelandicus clone AneBpol RNA polymerase II largest subunit mRNA, partial cds Length = 1111 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtacattg 144 ||||| |||||||| |||||||||||||||||||| |||||||| | || || ||| Sbjct: 518 gtcggccagcagaacgttgagggcaagcggattccgtttggtttccgcaagcggacgttg 577 Query: 145 ccccacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctac 204 || ||||||| || || || ||||| |||||| |||||| ||||| |||||||||||| Sbjct: 578 ccgcacttcatcaaggacgattacggtcccgaatctcgtggctttgtggagaactcctac 637 Query: 205 ct 206 || Sbjct: 638 ct 639
>ref|XM_626822.1| Cryptosporidium parvum Iowa II putative DNA-directed RNA polymerase,putative RNA polymerase A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus (cgd3_2620), partial mRNA Length = 5709 Score = 67.9 bits (34), Expect = 3e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 175 gaaagtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttc 234 ||||||||||| |||||| |||||| || ||| |||||| ||||| |||||| |||| Sbjct: 2488 gaaagtcgtggttttgtttcgaactcatatctttcaggtcttacaccccaggaagttttt 2547 Query: 235 ttccatgctatgggtggtagagaaggtttgattgatactgct 276 || ||||||||||| || |||||||| | |||||||||||| Sbjct: 2548 tttcatgctatgggaggcagagaaggaatcattgatactgct 2589
>gb|AF139011.2| Tomocerus sp. 'Tom' RNA polymerase II largest subunit mRNA, partial cds Length = 1630 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 235 ttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||||||||||||||||| | ||||||||||||||||| ||||| ||||| Sbjct: 893 ttccatgctatgggtggtcgtgaaggtttgattgatacggctgtaaaaac 942
>gb|DQ294597.1| Rhizophlyctis rosea isolate AFTOL-ID-43 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 3305 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 175 gaaagtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttc 234 |||||||| || |||||||| ||||| ||| | || || |||| || ||||| |||||| Sbjct: 2457 gaaagtcgcggctttgttgacaactcgtacgtgcgtggcttgacgcctcaggagtttttc 2516 Query: 235 ttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaacctccgagacg 294 ||||| || ||||||||| | ||||||||||| || || ||||| |||||| | |||||| Sbjct: 2517 ttccacgccatgggtggtcgtgaaggtttgatcgacaccgctgttaaaaccgctgagacg 2576 Query: 295 gg 296 || Sbjct: 2577 gg 2578
>gb|AY305596.1| Nicoletia meinerti clone NmeApol RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 232 ttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||||||| |||||||| || ||||||||| | |||||||||||||||||||| Sbjct: 890 ttcttccacgctatgggaggaagagaaggtcttattgatactgctgtgaaaac 942
>ref|XM_714321.1| Candida albicans SC5314 RNA polymerase II large subunit (CaO19_7655), mRNA Length = 5187 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 220 ccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtg 279 ||||| ||||| || ||||| || |||| ||||||||||||| | ||||||||||||||| Sbjct: 2428 ccacaagaattctttttccacgccatggctggtagagaaggtcttattgatactgctgtg 2487 Query: 280 aaaac 284 ||||| Sbjct: 2488 aaaac 2492
>ref|XM_661065.1| Cryptosporidium hominis TU502 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain (Chro.30301) partial mRNA Length = 5688 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Plus Query: 175 gaaagtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttc 234 ||||||||||| |||||| |||||| || ||| |||||| ||||| |||||| |||| Sbjct: 2467 gaaagtcgtggttttgtttcgaactcatatctttcaggtcttacaccccaggaagttttt 2526 Query: 235 ttccatgctatgggtggtagagaaggtttgattgatactgc 275 || ||||||||||| || |||||||| | ||||||||||| Sbjct: 2527 tttcatgctatgggaggcagagaaggaatcattgatactgc 2567
>emb|AJ278953.1|PAN278953 Pleistophora anguillarum partial rpb1 gene for RNA polymerase II largest subunit Length = 1752 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaacc 285 ||||||||||| |||||||||||||| |||||||| | || ||||| ||||| ||||| Sbjct: 1114 gaatttttctttcatgctatgggtggaagagaagggcttatagatacggctgtaaaaaca 1173 Query: 286 tccgagacgggatatatacaa 306 |||||||||| || |||||| Sbjct: 1174 gccgagacgggttacatacaa 1194
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 223 caggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgc 275 ||||| ||||||||||| ||||||||||| | |||||||||||||||||||| Sbjct: 863213 caggagtttttcttccacgctatgggtggccgtgaaggtttgattgatactgc 863161
>gb|AF138990.2| Machiloides banksi RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 225 ggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaa 281 |||||| || |||||||||||||| || ||||||||| | ||||||||||||||||| Sbjct: 883 ggaattctttttccatgctatgggaggcagagaaggtcttattgatactgctgtgaa 939
>ref|NM_209535.1| Eremothecium gossypii ADR086Cp (ADR086C), mRNA Length = 5238 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 223 caggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgc 275 ||||| ||||||||||| ||||||||||| | |||||||||||||||||||| Sbjct: 2431 caggagtttttcttccacgctatgggtggccgtgaaggtttgattgatactgc 2483
>gb|DQ294611.1| Neocallimastix sp. GE13 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 2440 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 220 ccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtg 279 ||||| ||||| |||||||| |||||||||||| | |||||||| |||||||| ||||| Sbjct: 1640 ccacaagaattcttcttccacgctatgggtggtcgtgaaggtttaattgatacagctgta 1699 Query: 280 aaaac 284 ||||| Sbjct: 1700 aaaac 1704 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 55 ttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcgg 114 |||||||||||||| |||||||| || ||||| || ||||| || || || || ||||| Sbjct: 1475 ttcattaatatttctcaaatgacagcctgtgtaggtcagcaaaacgtagaaggtaagcgt 1534 Query: 115 attccatttggtttt 129 ||||||||||||||| Sbjct: 1535 attccatttggtttt 1549 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 343 aaatatgatggtactgttcgaaattcgctgggtgatgttatttaattcttgtatggagaa 402 ||||||||||||||||| || ||||| | ||| || ||||| |||||| ||||| ||| Sbjct: 1763 aaatatgatggtactgtacgtaattcatttggtcatattattcaattctgttatggtgaa 1822 Query: 403 gatggcatggatg 415 ||||| ||||||| Sbjct: 1823 gatggtatggatg 1835
>gb|AY305591.1| Neogonodactylus oerstedii clone NeoApol RNA polymerase II largest subunit mRNA, partial cds Length = 1873 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||| ||||||||||||||| ||| | || |||||||||||||||||||| ||||| Sbjct: 1424 ttttacttccatgctatgggaggtcgtgagggtttgattgatactgctgtaaaaac 1479
>gb|S52651.1| RNA polymerase II largest subunit [Dictyostelium discoideum, mRNA Partial, 2874 nt] Length = 2874 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 241 gctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 1 gctatgggtggtagagaaggtttaattgatactgccgtaaaaac 44
>gb|DQ294607.1| Phycomyces blakesleeanus isolate AFTOL-ID-184 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1845 Score = 63.9 bits (32), Expect = 4e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 54 tttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcg 113 ||||||||| ||||| || ||| |||| |||||||| ||||||||||||||||| || || Sbjct: 1726 tttcattaacatttctcagatgtctgcatgtgtcggtcagcagaatgttgagggtaaacg 1785 Query: 114 gattccatttggtttt 129 ||||| || |||||| Sbjct: 1786 tattcctttcggtttt 1801
>gb|DQ294594.1| Coemansia reversa isolate AFTOL-ID-140 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 3040 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 77 ctgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggttt 128 |||||||||| ||||||||||| |||||||| ||||| ||||| |||||||| Sbjct: 2097 ctgcttgtgttggacagcagaacgttgagggtaagcgcattccctttggttt 2148
>gb|BC107140.1| Homo sapiens cDNA clone IMAGE:40027845 Length = 459 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 88 ggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtacattgccc 147 ||||||||||| || ||||||||||||||||||||||| || | || || |||| Sbjct: 328 ggacagcagaacgtcgagggcaagcggattccatttggcttcaagcaccggactctgcct 269 Query: 148 cacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctacct 206 ||||||| || ||||||||||| || || || ||||| ||||| |||||||||||||| Sbjct: 268 cacttcatcaaggatgactacgggcctgagagccgtggctttgtggagaactcctacct 210
>gb|AY623801.1| Entamoeba histolytica RNA polymerase II largest subunit (RPB1) gene, complete cds Length = 4911 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 220 ccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtg 279 ||||| ||||||||||| |||||||||| || ||| ||||| | |||||||||||||| Sbjct: 2422 ccacaagaatttttctttcatgctatggcaggaagacaaggtattattgatactgctgtt 2481 Query: 280 aaaacctccgagacgggatatat 302 ||||| || || || |||||||| Sbjct: 2482 aaaacatcagatactggatatat 2504
>ref|XM_646689.1| Entamoeba histolytica HM-1:IMSS DNA-directed RNA polymerase II large subunit (147.t00005) partial mRNA Length = 4896 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 220 ccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtg 279 ||||| ||||||||||| |||||||||| || ||| ||||| | |||||||||||||| Sbjct: 2407 ccacaagaatttttctttcatgctatggcaggaagacaaggtattattgatactgctgtt 2466 Query: 280 aaaacctccgagacgggatatat 302 ||||| || || || |||||||| Sbjct: 2467 aaaacatcagatactggatatat 2489
>ref|XM_648656.1| Entamoeba histolytica HM-1:IMSS DNA-directed RNA polymerase III largest subunit (73.t00023) partial mRNA Length = 4140 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaagg 260 ||||||||||||||| ||||||||||||||||||| Sbjct: 2575 gaatttttcttccatactatgggtggtagagaagg 2609
>gb|AY437920.1| Ephedra viridis RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1255 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 4 tctgagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaat 63 ||||||||||| ||||||||||| ||||| ||||| || |||||||| ||||| || ||| Sbjct: 1181 tctgagagcaataatttgaaagccatggttactgctggttcaaaaggaagttttatcaat 1240 Query: 64 atttcgcaaatgact 78 || || || |||||| Sbjct: 1241 atatcacagatgact 1255
>gb|AC113189.11| Homo sapiens chromosome 17, clone RP11-104H15, complete sequence Length = 184349 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 88 ggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtacattgccc 147 ||||||||||| || ||||||||||||||||||||||| || | || || |||| Sbjct: 151998 ggacagcagaacgtcgagggcaagcggattccatttggcttcaagcaccggactctgcct 152057 Query: 148 cacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctacct 206 ||||||| || ||||||||||| || || || ||||| ||||| |||||||||||||| Sbjct: 152058 cacttcatcaaggatgactacgggcctgagagccgtggctttgtggagaactcctacct 152116
>emb|Z98551.1|PFMAL3P6 Plasmodium falciparum MAL3P6, complete sequence Length = 164399 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 217 acaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgc 275 |||||||| ||| | || |||||||||||||| |||||||||||| | ||||||||||| Sbjct: 105585 acaccacaagaagtatttttccatgctatgggaggtagagaaggtattattgatactgc 105643 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 380 ttatttaattcttgtatggagaagatggcatgg 412 ||||| |||| ||||||||||||||||| |||| Sbjct: 105748 ttattcaatttttgtatggagaagatggtatgg 105780
>emb|X63564.1|HSRPIILS H.sapiens mRNA for RNA polymerase II largest subunit Length = 6732 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 88 ggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtacattgccc 147 ||||||||||| || ||||||||||||||||||||||| || | || || |||| Sbjct: 2751 ggacagcagaacgtcgagggcaagcggattccatttggcttcaagcaccggactctgcct 2810 Query: 148 cacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctacct 206 ||||||| || ||||||||||| || || || ||||| ||||| |||||||||||||| Sbjct: 2811 cacttcatcaaggatgactacgggcctgagagccgtggctttgtggagaactcctacct 2869
>emb|X16561.1|PFPOLII Plasmodium falciparum DNA for RNA polymerase II large subunit (EC 2.7.7.6) Length = 8631 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 217 acaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgc 275 |||||||| ||| | || |||||||||||||| |||||||||||| | ||||||||||| Sbjct: 2985 acaccacaagaagtatttttccatgctatgggaggtagagaaggtattattgatactgc 3043 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 380 ttatttaattcttgtatggagaagatggcatgg 412 ||||| |||| ||||||||||||||||| |||| Sbjct: 3148 ttattcaatttttgtatggagaagatggtatgg 3180
>gb|U90041.2|PSU90041 Pedetontus saltator RNA polymerase II largest subunit mRNA, partial cds Length = 2167 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||| || |||||||||||||| || ||||||||| | |||||||| ||||||||||| Sbjct: 1421 gaattctttttccatgctatgggaggcagagaaggtcttattgatacagctgtgaaaac 1479
>ref|NM_000937.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide A, 220kDa (POLR2A), mRNA Length = 6732 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 88 ggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtacattgccc 147 ||||||||||| || ||||||||||||||||||||||| || | || || |||| Sbjct: 2751 ggacagcagaacgtcgagggcaagcggattccatttggcttcaagcaccggactctgcct 2810 Query: 148 cacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctacct 206 ||||||| || ||||||||||| || || || ||||| ||||| |||||||||||||| Sbjct: 2811 cacttcatcaaggatgactacgggcctgagagccgtggctttgtggagaactcctacct 2869
>gb|AF138981.2| Endeis laevis RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||||| ||||| ||||| ||| | |||||||| |||||||||||||| ||||| Sbjct: 884 gaatttttctttcatgccatgggaggtcgtgaaggtttaattgatactgctgtcaaaac 942 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 94 cagaatgttgagggcaagcggattccatttggtttt 129 ||||||||||| || ||||| ||||||||||||||| Sbjct: 752 cagaatgttgaaggaaagcgtattccatttggtttt 787
>dbj|AB092413.1| Entamoeba histolytica gene for RNA polymerase II subunit Rpb1, partial cds Length = 4775 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 220 ccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtg 279 ||||| ||||||||||| |||||||||| || ||| ||||| | |||||||||||||| Sbjct: 2281 ccacaagaatttttctttcatgctatggcaggaagacaaggtattattgatactgctgtt 2340 Query: 280 aaaacctccgagacgggatatat 302 ||||| || || || |||||||| Sbjct: 2341 aaaacatcagatactggatatat 2363
>emb|X74872.1|HSRPII03 H.sapiens gene for RNA pol II largest subunit, exons 11-19 Length = 3531 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Plus Query: 88 ggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtacattgccc 147 ||||||||||| || ||||||||||||||||||||||| || | || || |||| Sbjct: 1640 ggacagcagaacgtcgagggcaagcggattccatttggcttcaagcaccggactctgcct 1699 Query: 148 cacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctacct 206 ||||||| || ||||||||||| || || || ||||| ||||| |||||||||||||| Sbjct: 1700 cacttcatcaaggatgactacgggcctgagagccgtggctttgtggagaactcctacct 1758
>dbj|AB077100.1| Conidiobolus coronatus RPB1 gene for DNA-dependent RNA polymerase II largest subunit, partial cds Length = 1008 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 43 tcaaaaggcagtttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgtt 102 |||||||| ||||||||||||||||| || ||| |||||||||| || || || || ||| Sbjct: 815 tcaaaaggtagtttcattaatatttctcagatgtctgcttgtgtgggtcaacaaaacgtt 874 Query: 103 gagggcaagcggattccatttggtttt 129 || || | || ||||||||||||||| Sbjct: 875 gaaggtcaacgtattccatttggtttt 901
>dbj|AB077098.1| Mucor mucedo RPB1 gene for DNA-dependent RNA polymerase II largest subunit, partial cds Length = 1009 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 54 tttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttga 104 ||||||||||||||| |||||| ||||||||||||| || || |||||||| Sbjct: 826 tttcattaatatttctcaaatgtctgcttgtgtcggtcaacaaaatgttga 876
>dbj|AB077092.1| Rhizophydium sp. YT-GR1 RPB1 gene for DNA-dependent RNA polymerase II largest subunit, partial cds Length = 1005 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 59 ttaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattc 118 ||||||||||||| ||||| || ||||| ||||||||||| || ||||| ||||| |||| Sbjct: 828 ttaatatttcgcagatgacggcctgtgttggacagcagaacgtcgagggaaagcgaattc 887 Query: 119 catttgg 125 | ||||| Sbjct: 888 cgtttgg 894
>gb|DQ294591.1| Conidiobolus coronatus isolate AFTOL-ID-137 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 2248 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 43 tcaaaaggcagtttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgtt 102 ||||| || ||||||||||||||||| |||||| ||||||||||||| || || || || Sbjct: 2057 tcaaagggtagtttcattaatatttctcaaatgtctgcttgtgtcggtcaacaaaacgtc 2116 Query: 103 gagggcaagcggattccatttggtttt 129 || || | || ||||||||||||||| Sbjct: 2117 gaaggtcaacgtattccatttggtttt 2143
>ref|XM_876181.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide A (220kD), transcript variant 4 (POLR2A), mRNA Length = 6411 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 2498 tgtcgggcagcagaatgtggagggcaagcggatcccatttgg 2539
>ref|XM_876122.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide A (220kD), transcript variant 3 (POLR2A), mRNA Length = 6090 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 2498 tgtcgggcagcagaatgtggagggcaagcggatcccatttgg 2539
>ref|XM_876055.1| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide A (220kD), transcript variant 2 (POLR2A), mRNA Length = 5974 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 2250 tgtcgggcagcagaatgtggagggcaagcggatcccatttgg 2291
>ref|XM_596010.2| PREDICTED: Bos taurus polymerase (RNA) II (DNA directed) polypeptide A (220kD), transcript variant 1 (POLR2A), mRNA Length = 6405 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 2498 tgtcgggcagcagaatgtggagggcaagcggatcccatttgg 2539
>ref|XM_959004.1| Neurospora crassa OR74A hypothetical protein (NCU02103.1) partial mRNA Length = 5259 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||||||||| || |||| |||||||||||||||||| ||||| ||||| Sbjct: 2479 tttttcttccacgccatggctggtagagaaggtttgatcgataccgctgt 2528 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 349 gatggtactgttcgaaattcgctgggtgat 378 |||||||||||||| || |||||||||||| Sbjct: 2599 gatggtactgttcgcaactcgctgggtgat 2628
>ref|XM_329292.1| Neurospora crassa OR74A hypothetical protein (NCU02103.1) partial mRNA Length = 5259 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||||||||| || |||| |||||||||||||||||| ||||| ||||| Sbjct: 2479 tttttcttccacgccatggctggtagagaaggtttgatcgataccgctgt 2528 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 349 gatggtactgttcgaaattcgctgggtgat 378 |||||||||||||| || |||||||||||| Sbjct: 2599 gatggtactgttcgcaactcgctgggtgat 2628
>gb|AY305581.1| Lynceus sp. JCR-2003 RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 235 ttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||| ||||||||||| ||||||||| | ||||||||||| |||||||| Sbjct: 893 ttccacgctatgggtggaagagaaggtcttattgatactgccgtgaaaac 942
>ref|NM_009089.1| Mus musculus polymerase (RNA) II (DNA directed) polypeptide A (Polr2a), mRNA Length = 5799 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 2361 tgtcgggcagcagaatgtagagggcaagcggatcccatttgg 2402
>emb|AL603707.5| Mouse DNA sequence from clone RP23-422L16 on chromosome 11 Contains the 3' end of the Sat2 gene for spermidine/spermine N1-acetyl transferase 2, a ribosomal potein S15A (Rps15a) pseudogene, a ubiquitin-like 5 (Ubl5) pseudogene, the Fxr2h gene for autosomal homolog of fragile X mental retardation gene 2, the Sox15 gene for SRY-box containing gene 15, the Mpdu1 gene for mannose-P-dolichol utilization defect 1, the Cd68 gene for CD68 antigen, the Eif4a1 gene for eukaryotic translation initiation factor 4A1, the gene for sentrin/SUMO-specific protease Smt3ip1, the Tnfsf13 and Tnfsf12 genes for tumor necrosis factor (ligand) superfamily members 13 and 12, three novel genes, a ribosomal protein L13 (Rpl13) pseudogene, the Polr2a gene for polymerase (RNA) II (DNA directed) polypeptide A, the Amac1 gene for acyl-malonyl condensing enzyme, the gene for a novel BTB/POZ domain containing C2H2 type zinc finger protein, the Chrnb1 gene for nicotinic cholinergic receptor beta polypeptide 1 (muscle), the Fgf11 gene for fibroblast growth factor 11, a novel pseudogene, the gene for the ortholog of human and rat neuroligin 2 NLGN2, the gene for a novel protein of unknown function (DUF423) family member, the Plscr3 gene for phospholipid scramblase 3, the 3' end of the Tnk1 gene for non-receptor tyrosine kinase 1 and nine CpG islands, complete sequence Length = 234182 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 122127 tgtcgggcagcagaatgtagagggcaagcggatcccatttgg 122086
>emb|AJ278951.1|LAC278951 Loma acerinae partial rpb1 gene for RNA polymerase II largest subunit Length = 2682 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaacc 285 ||||||| ||| ||||| ||||| || |||||||| || ||||||||||| ||||| ||| Sbjct: 2155 gaattttactttcatgcgatgggcggcagagaaggattaattgatactgcggtgaagacc 2214 Query: 286 tccgagacgggata 299 | ||||||||||| Sbjct: 2215 gcagagacgggata 2228 Score = 48.1 bits (24), Expect = 0.023 Identities = 45/52 (86%) Strand = Plus / Plus Query: 56 tcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgaggg 107 |||| ||||||||||| || | ||| ||||| |||| ||||||||||||||| Sbjct: 1988 tcatcaatatttcgcagatcattgcctgtgtgggaccgcagaatgttgaggg 2039
>emb|AJ010592.2|GTAJ10592 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2 Length = 180915 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgc 275 ||||||||||||||| | ||||| ||||||||||| |||||||| ||||| Sbjct: 160076 gaatttttcttccattcaatgggaggtagagaagggttgattgacactgc 160125
>dbj|AK155391.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630223N03 product:polymerase (RNA) II (DNA directed) polypeptide A, full insert sequence Length = 3595 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 2773 tgtcgggcagcagaatgtagagggcaagcggatcccatttgg 2814
>dbj|AK154389.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630026F16 product:polymerase (RNA) II (DNA directed) polypeptide A, full insert sequence Length = 3595 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 2773 tgtcgggcagcagaatgtagagggcaagcggatcccatttgg 2814
>dbj|AK154270.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630014B05 product:polymerase (RNA) II (DNA directed) polypeptide A, full insert sequence Length = 3595 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 2773 tgtcgggcagcagaatgtagagggcaagcggatcccatttgg 2814
>gb|AF315819.1|AF315819 Botryocladia uvarioides DNA-dependent RNA polymerase II largest subunit RPB1 (RPB1) gene, partial cds Length = 5136 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgc 275 |||||||||||||||||||||||||| | |||||| | ||||||||||| Sbjct: 2173 gaatttttcttccatgctatgggtggacgggaaggtcttattgatactgc 2222
>dbj|AB077094.1| Allomyces sp. YT-TT1 RPB1 gene for DNA-dependent RNA polymerase II largest subunit, partial cds Length = 1005 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 64 atttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccattt 123 |||||||||||| | || |||||||| |||||||| || ||||||||||| ||||| ||| Sbjct: 833 atttcgcaaatgtcggcgtgtgtcgggcagcagaacgtcgagggcaagcgcattccgttt 892 Query: 124 gg 125 || Sbjct: 893 gg 894
>gb|DQ294578.1| Allomyces arbuscula isolate AFTOL-ID-300 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 2304 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 64 atttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggattccattt 123 |||||||||||| | || |||||||| |||||||| || ||||||||||| ||||| ||| Sbjct: 2131 atttcgcaaatgtcggcgtgtgtcgggcagcagaacgtcgagggcaagcgcattccgttt 2190 Query: 124 gg 125 || Sbjct: 2191 gg 2192
>gb|U37500.1|MMU37500 Mus musculus RNA polymerase II largest subunit (RPB1) mRNA, complete cds Length = 6270 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 2430 tgtcgggcagcagaatgtagagggcaagcggatcccatttgg 2471
>gb|M12130.1|MUSRPOII2 Mouse locus RPII215 polymerase II large subunit gene, exons 2-28 Length = 15419 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 5417 tgtcgggcagcagaatgtagagggcaagcggatcccatttgg 5458
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| Sbjct: 1060214 gaattttggttccacgctatgggtggccgagaaggtttgattgataccgctgt 1060266
>ref|XM_653321.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0809.2), mRNA Length = 5238 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 |||||||||||||| ||||||| |||| |||||||| | || ||||||||||| Sbjct: 2494 gaatttttcttccacgctatggctggtcgagaaggtctcatcgatactgctgt 2546
>ref|XM_570943.1| Cryptococcus neoformans var. neoformans JEC21 DNA-directed RNA polymerase ii largest subunit (CNE03720) partial mRNA Length = 5912 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| Sbjct: 2810 gaattttggttccacgctatgggtggccgagaaggtttgattgataccgctgt 2862
>gb|AY310212.1| Lithobius forticatus voucher Lfo__B RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||||||||| || || ||||| || |||||||||||||||||||| ||||| Sbjct: 884 gaatttttctttcacgccatgggaggaagagaaggtttgattgatacagctgt 936
>dbj|AB097415.1| Coemansia mojavensis RPB1 gene for DNA-dependent RNA polymerase II largest subunit, partial cds Length = 1008 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 73 atgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||||||||| ||||| |||||||| || ||||||||||| ||||| ||||| Sbjct: 845 atgactgcttgcgtcggtcagcagaacgtcgagggcaagcgcattccttttgg 897
>gb|DQ294592.1| Glomus mosseae isolate AFTOL-ID-139 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1836 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 54 tttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaa 110 |||||||||||| || || ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 1656 tttcattaatatctctcagatgacagcttgtgttggacaacagaacgttgagggcaa 1712
>gb|DQ294580.1| Physoderma maydis isolate AFTOL-ID-19 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 2362 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 57 cattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggat 116 |||||| |||||||||||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 2185 cattaacatttcgcaaatgacagcttgtgtcggtcaacaaaatgtcgaggggaaacgtat 2244 Query: 117 tccatttgg 125 ||| ||||| Sbjct: 2245 tccttttgg 2253
>gb|AY305544.1| Argulus sp. Arg2 RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||| ||| ||||||||||| || ||||||||| | |||||||||||||| ||||| Sbjct: 887 ttttactttcatgctatgggagggagagaaggtcttattgatactgctgttaaaac 942
>ref|XM_455310.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F05071g predicted mRNA Length = 5163 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 209 gaggtctgacaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattg 268 ||||||| ||||| || || ||||||||||| || ||||||||| | |||||||| || | Sbjct: 2417 gaggtctaacaccccaagagtttttcttccacgcaatgggtggtcgtgaaggtttaatcg 2476 Query: 269 atactgctgtgaaaac 284 |||| || |||||||| Sbjct: 2477 ataccgccgtgaaaac 2492
>gb|AY437916.1| Cycas revoluta RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1177 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 7 gagagcaacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatt 66 ||||| || |||||||| || ||||| ||||| ||||||||||| ||||| |||||||| Sbjct: 1106 gagagtaataatttgaaggcaatggttactgctggctcaaaaggaagttttattaatata 1165 Query: 67 tcgcaaatgact 78 || || |||||| Sbjct: 1166 tcacagatgact 1177
>ref|XM_726075.1| Plasmodium yoelii yoelii str. 17XNL RNA polymerase A/beta'/A'' subunit (PY03187) partial mRNA Length = 6939 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 217 acaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgct 276 |||||||| ||| | || || ||||||||||| |||||||||||| | |||||||||||| Sbjct: 2791 acaccacaagaagtcttttttcatgctatgggaggtagagaaggtattattgatactgct 2850
>gb|AY310218.1| Narceus americanus voucher Nam RNA polymerase II largest subunit mRNA, partial cds Length = 892 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 143 tgccccacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcct 202 |||||||||||| ||||| || ||||| ||||| |||||||| ||||| |||||||| | Sbjct: 801 tgccccacttcatcaaagacgattacgggcccgagagtcgtggctttgtggagaactctt 860 Query: 203 acct 206 |||| Sbjct: 861 acct 864
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 209 gaggtctgacaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattg 268 ||||||| ||||| || || ||||||||||| || ||||||||| | |||||||| || | Sbjct: 499117 gaggtctaacaccccaagagtttttcttccacgcaatgggtggtcgtgaaggtttaatcg 499058 Query: 269 atactgctgtgaaaac 284 |||| || |||||||| Sbjct: 499057 ataccgccgtgaaaac 499042
>gb|AF138993.2| Nipponopsalis abei RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 78 tgcttgtgtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||||||| |||||||| || |||||||| ||||| ||||||||||| Sbjct: 736 tgcttgtgtgggacagcaaaacgttgagggaaagcgtattccatttgg 783
>gb|AF138982.2| Hanseniella sp. 'Han' RNA polymerase II largest subunit mRNA, partial cds Length = 1405 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 ||||| ||||||||||||||| ||||| ||||| || ||||||||||| |||||| Sbjct: 620 tttgtggagaactcctaccttgccggtctaacaccctctgagtttttcttccacgctatg 679 Query: 247 ggtggtagagaaggtttgattgatactgctgt 278 || ||| | |||||| | |||||||||||||| Sbjct: 680 ggaggtcgtgaaggtcttattgatactgctgt 711
>gb|U73456.1|TPU73456 Teratorhabditis palmarum large subunit RNA polymerase II mRNA, partial cds Length = 1893 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 225 ggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||||||||| |||||||| ||| | |||||| | ||||||||||| || ||||| Sbjct: 117 ggaatttttcttccacgctatgggaggtcgtgaaggtcttattgatactgcagtcaaaac 176
>gb|AY864886.1| Stereum hirsutum isolate AFTOL-ID 492 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1139 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 145 ccccacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcctac 204 ||||| |||||||||||||| | | |||| || |||||| || || |||||||| ||| Sbjct: 1024 ccccatttcacgaaagatgatttcagcccggaggctcgtggtttcgtcgagaactcgtac 1083 Query: 205 cttcgaggtctgacaccacaggaatttttcttccatgctatgggtggtagagaagg 260 ||||| || |||| ||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct: 1084 cttcgcggcttgacgccacaagaattcttcttccacgccatgggaggtagcgaagg 1139
>emb|AL590443.1|CNS07EGA chromosome III of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 194439 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 74 tgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||||| ||||| || ||||||||||||||||| ||||| ||||| ||||| Sbjct: 36474 tgactgcctgtgtggggcagcagaatgttgagggaaagcgcattccctttgg 36423
>gb|DQ294595.1| Mortierella verticillata isolate AFTOL-ID-141 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 3409 Score = 56.0 bits (28), Expect = 1e-04 Identities = 85/104 (81%) Strand = Plus / Plus Query: 172 cccgaaagtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaattt 231 ||||| |||||||| || || |||||||| || || || ||||| || ||||| || || Sbjct: 2537 cccgagagtcgtggtttcgtcgagaactcgtatctccgtggtctcaccccacaagagttc 2596 Query: 232 ttcttccatgctatgggtggtagagaaggtttgattgatactgc 275 |||||||| || ||||| ||| | || ||||||||||||||||| Sbjct: 2597 ttcttccacgccatgggaggtcgtgagggtttgattgatactgc 2640
>ref|XM_637632.1| Dictyostelium discoideum RNA polymerase III, largest subunit (DDB0216293), partial mRNA Length = 4353 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 242 ctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||||||||||||||| |||||| | ||||||||||| ||||| Sbjct: 2516 ctatgggtggtagagagggtttggtagatactgctgtaaaaac 2558
>gb|AY305562.1| Forficula auricularia clone FauApol RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||| |||||||| ||||| || ||||||||||| |||||||| ||||| ||||| Sbjct: 884 gaattttatttccatgccatgggaggaagagaaggtttaattgataccgctgtcaaaac 942
>gb|AC116977.2| Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence Length = 302156 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 242 ctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||||||||||||||| |||||| | ||||||||||| ||||| Sbjct: 122322 ctatgggtggtagagagggtttggtagatactgctgtaaaaac 122364
>gb|AY437921.1| Nymphaea odorata RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1127 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 20 tgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatttcgcaaatgact 78 |||| ||||||||||||||||| || ||||| ||||| || |||||||| || |||||| Sbjct: 1069 tgaaggctatggtcactgcaggatctaaaggaagttttatcaatatttcacagatgact 1127
>ref|XM_737265.1| Plasmodium chabaudi chabaudi DNA-directed RNA polymerase II, (PC000173.04.0) partial mRNA Length = 2628 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 238 catgctatgggtggtagagaaggtttgattgatactgct 276 ||||||||||| |||||||||||| | |||||||||||| Sbjct: 883 catgctatgggaggtagagaaggtattattgatactgct 921
>gb|AF240949.1| Pachymerium ferrugineum RNA polymerase II largest subunit mRNA, partial cds Length = 714 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 259 ggtttgattgatactgctgtgaaaacctccgagac 293 |||||||||||||||||||||||||| ||||||| Sbjct: 1 ggtttgattgatactgctgtgaaaacagccgagac 35
>emb|X96876.1|SCCHRIVFY S.cerevisiae DNA of cosmid from chromosome IV, strain FY 1679 Length = 26756 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 |||||||||||||| || | ||||| |||| ||||| |||||||| |||||||| ||| Sbjct: 5374 tttgttgagaactcatatttgagaggtttgaccccacaagaattttttttccatgcaatg 5315 Query: 247 ggtggtagagaaggt 261 |||||| | |||||| Sbjct: 5314 ggtggtcgtgaaggt 5300
>emb|X03128.1|SCRPO21 Yeast gene RPO21 for RNA polymerase II largest subunit Length = 6224 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 |||||||||||||| || | ||||| |||| ||||| |||||||| |||||||| ||| Sbjct: 2707 tttgttgagaactcatatttgagaggtttgaccccacaagaattttttttccatgcaatg 2766 Query: 247 ggtggtagagaaggt 261 |||||| | |||||| Sbjct: 2767 ggtggtcgtgaaggt 2781
>gb|AF395110.1| Naegleria gruberi RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 4790 Score = 54.0 bits (27), Expect = 4e-04 Identities = 150/191 (78%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaacc 285 ||||| |||||||| ||||||||||| | ||||||||||| |||||||| || || || Sbjct: 2263 gaattcttcttccacactatgggtggtcgtgaaggtttgatcgatactgccgtcaagaca 2322 Query: 286 tccgagacgggatatatacaacggaggctcgtgaaggctatggaggacattatggtgaaa 345 || || || || ||||| ||| | || | | ||||||||||| || || ||||| || Sbjct: 2323 tctgaaactggttatatccaaagaagattgataaaggctatggaagatatcatggtcaag 2382 Query: 346 tatgatggtactgttcgaaattcgctgggtgatgttatttaattcttgtatggagaagat 405 || ||||||||||| || || | | ||| ||||| | ||||||||||||| |||||| Sbjct: 2383 tacgatggtactgtccgtgatgctcaaggtaatgttgtccaattcttgtatggtgaagat 2442 Query: 406 ggcatggatgc 416 || |||||||| Sbjct: 2443 ggtatggatgc 2453
>ref|XM_623278.1| PREDICTED: Apis mellifera similar to GA13798-PA (LOC550829), mRNA Length = 4269 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 238 catgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||||||||| | |||||| | |||||||||||||| ||||| Sbjct: 2491 catgctatgggtggtcgtgaaggtcttattgatactgctgtaaaaac 2537 Score = 40.1 bits (20), Expect = 5.7 Identities = 59/72 (81%) Strand = Plus / Plus Query: 58 attaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggatt 117 ||||||||||| ||| | | |||||||||||| || || ||||| || || || || ||| Sbjct: 2311 attaatatttctcaagttattgcttgtgtcggccaacaaaatgtagaaggtaaacgtatt 2370 Query: 118 ccatttggtttt 129 ||||| |||||| Sbjct: 2371 ccattcggtttt 2382
>ref|XM_623219.1| PREDICTED: Apis mellifera similar to GA13798-PA (LOC550829), mRNA Length = 4134 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 238 catgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||||||||| | |||||| | |||||||||||||| ||||| Sbjct: 2356 catgctatgggtggtcgtgaaggtcttattgatactgctgtaaaaac 2402 Score = 40.1 bits (20), Expect = 5.7 Identities = 59/72 (81%) Strand = Plus / Plus Query: 58 attaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggatt 117 ||||||||||| ||| | | |||||||||||| || || ||||| || || || || ||| Sbjct: 2176 attaatatttctcaagttattgcttgtgtcggccaacaaaatgtagaaggtaaacgtatt 2235 Query: 118 ccatttggtttt 129 ||||| |||||| Sbjct: 2236 ccattcggtttt 2247
>emb|Z74188.1|SCYDL140C S.cerevisiae chromosome IV reading frame ORF YDL140c Length = 6263 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 |||||||||||||| || | ||||| |||| ||||| |||||||| |||||||| ||| Sbjct: 3056 tttgttgagaactcatatttgagaggtttgaccccacaagaattttttttccatgcaatg 2997 Query: 247 ggtggtagagaaggt 261 |||||| | |||||| Sbjct: 2996 ggtggtcgtgaaggt 2982
>gb|AF060234.1|AF060234 Vairimorpha necatrix largest subunit of RNA polymerase II (RPB1) gene, complete cds Length = 5019 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgct 276 ||||| ||||| ||||||||||| |||||||||||| | ||||||| |||| Sbjct: 2540 gaattcttctttcatgctatgggaggtagagaaggtctaattgatattgct 2590
>gb|AY858964.1| Strobilomyces floccopus isolate AFTOL-ID 716 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1896 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 193 gagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatgggtggt 252 |||||||||||||| |||| |||| || || |||| |||||||||||| |||| |||| Sbjct: 1075 gagaactcctacctgagagggttgacgccgcaagaatatttcttccatgccatggctggt 1134 Query: 253 agagaaggtttgattgatactgc 275 |||| || ||||| |||||||| Sbjct: 1135 cgagaggggttgatcgatactgc 1157
>gb|AY305649.1| Richtersius coronifer clone RcoBpol RNA polymerase II largest subunit mRNA, partial cds Length = 667 Score = 52.0 bits (26), Expect = 0.001 Identities = 104/130 (80%) Strand = Plus / Plus Query: 78 tgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggttttgttgatcg 137 |||||||||||| |||||||| || ||||| || || |||||||| || ||| |||| Sbjct: 511 tgcttgtgtcggtcagcagaacgtggagggaaaacgtattccattcggctttcggcatcg 570 Query: 138 tacattgccccacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaa 197 |||| | || ||||||| | ||| ||||| || || ||||| ||||||||||| || || Sbjct: 571 tacacttcctcacttcattacagacgactatggaccagaaagccgtgggtttgtggaaaa 630 Query: 198 ctcctacctt 207 ||||||||| Sbjct: 631 ttcctacctt 640
>ref|XM_710389.1| Candida albicans SC5314 RNA polymerase III large subunit (CaO19_10615), mRNA Length = 4347 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgc 275 |||||||| ||||||||||| ||||||||||||||| |||||||||| Sbjct: 2563 gaatttttgttccatgctatttctggtagagaaggtttagttgatactgc 2612
>ref|XM_710319.1| Candida albicans SC5314 RNA polymerase III large subunit (CaO19_3103), mRNA Length = 4347 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgc 275 |||||||| ||||||||||| ||||||||||||||| |||||||||| Sbjct: 2563 gaatttttgttccatgctatttctggtagagaaggtttagttgatactgc 2612
>ref|NM_079019.2| Drosophila melanogaster RNA polymerase I subunit CG10122-RA (RpI1), mRNA Length = 5063 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Plus Query: 223 caggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaa 282 ||||| |||||||||||| |||| |||| | |||||| | |||||||||||||||||| Sbjct: 2897 caggactttttcttccattgcatggctggtcgtgaaggtctcattgatactgctgtgaaa 2956 Query: 283 ac 284 || Sbjct: 2957 ac 2958
>ref|XM_343922.2| PREDICTED: Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide A (Polr2a), mRNA Length = 5316 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 84 tgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2361 tgtcgggcagcagaacgtggagggcaagcggatcccatttgg 2402
>dbj|AB097416.1| Capniomyces stellatus RPB1 gene for DNA-dependent RNA polymerase II largest subunit, partial cds Length = 1024 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Plus Query: 187 tttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttccatgctatg 246 ||||| |||||||| ||||| || ||||| || || |||||||| | |||||| |||||| Sbjct: 947 tttgtcgagaactcgtacctgcgcggtctcacgccccaggaattctacttccacgctatg 1006 Query: 247 ggtggt 252 |||||| Sbjct: 1007 ggtggt 1012
>gb|AY604469.1| Prodontorhabditis wirthi strain DF5074 RNA polymerase 2 gene, partial cds Length = 2373 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||| || ||||| |||||||| ||| | ||||||||||||||||| ||||| Sbjct: 202 gaattctttttccacgctatgggaggtcgtgaaggtttgattgatacagctgt 254
>gb|AY305652.1| Thulinia stephaniae clone ThulApol RNA polymerase II largest subunit mRNA, partial cds Length = 892 Score = 50.1 bits (25), Expect = 0.006 Identities = 32/35 (91%) Strand = Plus / Plus Query: 172 cccgaaagtcgtgggtttgttgagaactcctacct 206 |||||||||||||| |||||||| ||||| ||||| Sbjct: 830 cccgaaagtcgtggatttgttgaraactcgtacct 864
>ref|XM_853587.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 23 (LOC479483), mRNA Length = 6456 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2762 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2802
>ref|XM_853549.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 22 (LOC479483), mRNA Length = 6468 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2768 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2808
>ref|XM_853506.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 21 (LOC479483), mRNA Length = 6480 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2768 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2808
>ref|XM_853460.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 20 (LOC479483), mRNA Length = 6465 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2669 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2709
>ref|XM_853428.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 19 (LOC479483), mRNA Length = 6516 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2720 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2760
>ref|XM_853391.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 18 (LOC479483), mRNA Length = 6285 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2762 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2802
>ref|XM_853358.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 17 (LOC479483), mRNA Length = 6388 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2732 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2772
>ref|XM_853318.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 16 (LOC479483), mRNA Length = 6048 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2732 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2772
>ref|XM_853280.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 15 (LOC479483), mRNA Length = 6564 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2768 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2808
>ref|XM_853239.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 14 (LOC479483), mRNA Length = 6295 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2681 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2721
>ref|XM_853200.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 13 (LOC479483), mRNA Length = 5958 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2681 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2721
>ref|XM_853162.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 12 (LOC479483), mRNA Length = 6558 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2762 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2802
>ref|XM_853117.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 11 (LOC479483), mRNA Length = 6561 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2765 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2805
>ref|XM_853080.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 10 (LOC479483), mRNA Length = 6312 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2750 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2790
>ref|XM_853039.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 9 (LOC479483), mRNA Length = 6345 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2750 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2790
>ref|XM_536621.2| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 1 (LOC479483), mRNA Length = 6628 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2762 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2802
>ref|XM_852955.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 8 (LOC479483), mRNA Length = 6493 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2762 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2802
>ref|XM_852914.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 7 (LOC479483), mRNA Length = 6366 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2762 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2802
>ref|XM_852871.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 6 (LOC479483), mRNA Length = 6637 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2720 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2760
>ref|XM_852828.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 5 (LOC479483), mRNA Length = 6415 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2720 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2760
>ref|XM_852789.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 4 (LOC479483), mRNA Length = 3172 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2762 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2802
>ref|XM_852751.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 3 (LOC479483), mRNA Length = 6700 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2762 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2802
>ref|XM_843971.1| PREDICTED: Canis familiaris similar to DNA-directed RNA polymerase II largest subunit (RPB1), transcript variant 2 (LOC479483), mRNA Length = 6558 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 85 gtcggacagcagaatgttgagggcaagcggattccatttgg 125 ||||| |||||||| || |||||||||||||| |||||||| Sbjct: 2762 gtcgggcagcagaacgtggagggcaagcggatcccatttgg 2802
>gb|U90042.2|SCU90042 Scutigera coleoptrata RNA polymerase II largest subunit mRNA, partial cds Length = 1746 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 256 gaaggtttgattgatactgctgtgaaaac 284 |||||| |||||||||||||||||||||| Sbjct: 1030 gaaggtctgattgatactgctgtgaaaac 1058
>gb|AF240896.2| Bothropolys multidentatus RNA polymerase II largest subunit mRNA, partial cds Length = 1873 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||| || ||||| || ||||| || |||||||||||||||||||| ||||| Sbjct: 1421 gaattctttttccacgccatgggaggaagagaaggtttgattgatacagctgt 1473
>emb|AJ278948.1|NTY278948 Nosema tyriae partial rpb1 gene for RNA polymerase II largest subunit Length = 2958 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 224 aggaatttttcttccatgctatgggtggtagagaaggtttgattgatac 272 |||||||||| || ||||||||||| ||| |||||||| | |||||||| Sbjct: 2189 aggaatttttttttcatgctatgggaggtcgagaaggtcttattgatac 2237 Score = 46.1 bits (23), Expect = 0.092 Identities = 62/75 (82%) Strand = Plus / Plus Query: 79 gcttgtgtcggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgt 138 |||||||| || |||||||| || || || ||| | ||||||||||| |||| | ||||| Sbjct: 2044 gcttgtgttggtcagcagaacgtagaaggtaagagaattccatttggatttgcttatcgt 2103 Query: 139 acattgccccacttc 153 ||| | ||||||||| Sbjct: 2104 acactcccccacttc 2118
>gb|AF139006.2| Scolopendra polymorpha RNA polymerase II largest subunit mRNA, partial cds Length = 2203 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||||| ||| || ||||||||||| | ||||| ||||||||||||||||| Sbjct: 1457 gaattttactttcacgctatgggtggccgtgaagggttgattgatactgctgt 1509
>gb|AF138970.1| Armadillidium vulgare RNA polymerase II largest subunit mRNA, partial cds Length = 1300 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 256 gaaggtttgattgatactgctgtgaaaac 284 ||||||||||||||||||||||| ||||| Sbjct: 5 gaaggtttgattgatactgctgtaaaaac 33
>gb|DQ294598.1| Umbelopsis ramanniana isolate AFTOL-ID-144 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1881 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 55 ttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcgg 114 ||||| || ||||| |||||||| ||||||||||| || ||||| || ||||| ||||| Sbjct: 1739 ttcatcaacatttcccaaatgacagcttgtgtcggtcaacagaacgtggagggaaagcgt 1798 Query: 115 attcc 119 ||||| Sbjct: 1799 attcc 1803
>gb|DQ294589.1| Basidiobolus ranarum isolate AFTOL-ID-301 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 3364 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 244 atgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||| | ||||||||||||||||| ||||| ||||| Sbjct: 2591 atgggtggtcgtgaaggtttgattgatacagctgttaaaac 2631 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 54 tttcattaatatttcgcaaatgactgcttgtgtcgg 89 ||||||||||||||| |||||| | ||||||||||| Sbjct: 2401 tttcattaatatttcccaaatgtccgcttgtgtcgg 2436
>dbj|AB025331.1| Eptatretus burgeri mRNA for RNA polymerase II largest subunit, partial cds Length = 1785 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 232 ttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||||||||||||||||||| |||| ||| | ||||||||||| || ||||| Sbjct: 1006 ttcttccatgctatgggtggccgagagggtctcattgatactgcagtcaaaac 1058
>gb|AY305646.1| Peripatus sp. Per3 RNA polymerase II largest subunit mRNA, partial cds Length = 1545 Score = 48.1 bits (24), Expect = 0.023 Identities = 54/64 (84%) Strand = Plus / Plus Query: 134 atcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtgggtttgttg 193 ||||||||||||| || |||| |||||||| || || || ||||||||||| ||||| | Sbjct: 1001 atcgtacattgcctcatttcattaaagatgattatggtcctgaaagtcgtggctttgtag 1060 Query: 194 agaa 197 |||| Sbjct: 1061 agaa 1064
>gb|AY305589.1| Mesocyclops edax clone MesoApol RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 48.1 bits (24), Expect = 0.023 Identities = 42/48 (87%) Strand = Plus / Plus Query: 78 tgcttgtgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||||||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct: 736 tgcttgtgtcggtcagcagaacgtcgagggtaagcgaattccctttgg 783
>ref|XM_705669.1| Candida albicans SC5314 RNA polymerase I largest subunit (CaO19.9397), mRNA Length = 4998 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 243 tatgggtggtagagaaggtttgattgatactgctgt 278 ||||| ||||||||||||||| |||||||| ||||| Sbjct: 2943 tatggctggtagagaaggtttaattgatacagctgt 2978
>ref|XM_705631.1| Candida albicans SC5314 RNA polymerase I largest subunit (CaO19.1839), mRNA Length = 4998 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 243 tatgggtggtagagaaggtttgattgatactgctgt 278 ||||| ||||||||||||||| |||||||| ||||| Sbjct: 2943 tatggctggtagagaaggtttaattgatacagctgt 2978
>gb|AF058710.1| Dictyostelium discoideum RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 2271 Score = 48.1 bits (24), Expect = 0.023 Identities = 93/116 (80%) Strand = Plus / Plus Query: 13 aacaatttgaaagctatggtcactgcaggctcaaaaggcagtttcattaatatttcgcaa 72 |||||||| || || ||||| |||||||| |||||||| |||||| ||||| || || Sbjct: 2026 aacaatttaaaggcgatggtaactgcaggttcaaaaggttctttcatcaatatctcacag 2085 Query: 73 atgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggttt 128 |||| |||||||| || || || ||||| || || || || |||||||||||||| Sbjct: 2086 atgatggcttgtgtaggtcaacaaaatgtcgaaggtaaacgtattccatttggttt 2141
>emb|BX957222.1| Methanococcus maripaludis S2 complete genome; segment 4/5 Length = 349607 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggt 261 |||| ||||||||| || |||||||||||||||||| Sbjct: 301728 gaatatttcttccacgcgatgggtggtagagaaggt 301763
>gb|AF315821.1|AF315821 Monosiga brevicollis DNA-dependent RNA polymerase II largest subunit RPB1 (RPB1) gene, partial cds Length = 6008 Score = 48.1 bits (24), Expect = 0.023 Identities = 42/48 (87%) Strand = Plus / Plus Query: 78 tgcttgtgtcggacagcagaatgttgagggcaagcggattccatttgg 125 |||||||||||| ||||| || ||||| |||||||| ||||| ||||| Sbjct: 2604 tgcttgtgtcggccagcaaaacgttgaaggcaagcgtattccctttgg 2651
>gb|AF315820.1|AF315820 Glaucosphaera vacuolata DNA-dependent RNA polymerase II largest subunit RPB1 (RPB1) gene, complete cds Length = 5773 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaagg 260 |||||||| ||||| ||||||||||||||||| Sbjct: 2782 tttttctttcatgcgatgggtggtagagaagg 2813
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 223 caggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||||| ||||||||||| |||||||||||||| ||| | | ||||||||||| Sbjct: 1373515 caggaatacttcttccatgcaatgggtggtagagagggtctcgtagatactgctgt 1373460
>dbj|AB097418.1| Dimargaris bacillispora RPB1 gene for DNA-dependent RNA polymerase II largest subunit, partial cds Length = 1008 Score = 48.1 bits (24), Expect = 0.023 Identities = 93/116 (80%) Strand = Plus / Plus Query: 73 atgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggttttgtt 132 ||||| || |||||||| |||||||| || || ||||| || ||||| ||| ||||| Sbjct: 845 atgacggcctgtgtcggtcagcagaacgtggaaggcaaacgtattcccttttgttttaag 904 Query: 133 gatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtgggtt 188 | || || |||||||||| | | || ||||||||||| |||||||| |||||||| Sbjct: 905 aaccgcactttgccccactacgccaaggatgactacggacccgaaagccgtgggtt 960
>gb|U73454.1|MSU73454 Mesorhabditis sp. large subunit RNA polymerase II mRNA, partial cds Length = 1899 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||||| |||||||| || ||||||| |||| ||||| ||||||||||| Sbjct: 121 tttttcttccacgctatgggcggacgagaaggactgatcgataccgctgtgaaaac 176
>gb|DQ294588.1| Dimargaris bacillispora isolate AFTOL-ID-136 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 2260 Score = 48.1 bits (24), Expect = 0.023 Identities = 93/116 (80%) Strand = Plus / Plus Query: 73 atgactgcttgtgtcggacagcagaatgttgagggcaagcggattccatttggttttgtt 132 ||||| || |||||||| |||||||| || || ||||| || ||||| ||| ||||| Sbjct: 2099 atgacggcctgtgtcggtcagcagaacgtggaaggcaaacgtattcccttttgttttaag 2158 Query: 133 gatcgtacattgccccacttcacgaaagatgactacggccccgaaagtcgtgggtt 188 | || || |||||||||| | | || ||||||||||| |||||||| |||||||| Sbjct: 2159 aaccgcactttgccccactacgccaaggatgactacggacccgaaagccgtgggtt 2214
>gb|AY601770.1|AY601770S1 Caenorhabditis remanei strain SB146 RNA polymerase 2 gene, partial cds Length = 748 Score = 46.1 bits (23), Expect = 0.092 Identities = 50/59 (84%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||| |||||||| || ||||| || | |||||| |||||||||| ||||||||||| Sbjct: 80 gaattcttcttccacgcaatgggaggacgtgaaggtctgattgatacggctgtgaaaac 138
>gb|AY305586.1| Hexagenia limbata clone MayCpol RNA polymerase II largest subunit mRNA, partial cds Length = 502 Score = 46.1 bits (23), Expect = 0.092 Identities = 44/51 (86%) Strand = Plus / Plus Query: 234 cttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||||| || ||||||||| | || ||| | |||||||||||||||||||| Sbjct: 58 cttccacgccatgggtggtcgtgagggtctcattgatactgctgtgaaaac 108
>ref|XM_381092.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00916.1) partial mRNA Length = 5277 Score = 46.1 bits (23), Expect = 0.092 Identities = 41/47 (87%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgc 275 ||||||||||| || |||| |||| |||||||| | ||||||||||| Sbjct: 2482 tttttcttccacgccatggctggtcgagaaggtctcattgatactgc 2528
>gb|DQ083406.1| Nosema plutellae isolate PX2 DNA-dependent RNA polymerase II largest subunit gene, partial cds Length = 1329 Score = 46.1 bits (23), Expect = 0.092 Identities = 53/63 (84%) Strand = Plus / Plus Query: 79 gcttgtgtcggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgt 138 |||||||| || |||||||| || || |||||| | ||||||||||| |||| | ||||| Sbjct: 404 gcttgtgttggtcagcagaacgtagaaggcaagagaattccatttggatttgcttatcgt 463 Query: 139 aca 141 ||| Sbjct: 464 aca 466 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 224 aggaatttttcttccatgctatgggtggtagagaaggtttgattgatac 272 ||||||| || || ||||||||||| ||| |||||||| | |||||||| Sbjct: 549 aggaattcttttttcatgctatgggaggtcgagaaggtcttattgatac 597
>gb|U90038.3|MGU90038 Mastigoproctus giganteus RNA polymerase II largest subunit mRNA, partial cds Length = 2662 Score = 46.1 bits (23), Expect = 0.092 Identities = 98/123 (79%) Strand = Plus / Plus Query: 58 attaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggatt 117 ||||||||||| || | | ||||||||| || |||||||| |||||||| || | || Sbjct: 1253 attaatatttctcaggttattgcttgtgtgggccagcagaacgttgagggtaaaagaata 1312 Query: 118 ccatttggttttgttgatcgtacattgccccacttcacgaaagatgactacggccccgaa 177 |||||||||||| | | ||||||||||| || || | |||||||| ||||| || ||| Sbjct: 1313 ccatttggttttcgtaaacgtacattgcctcattttattaaagatgattacggtccagaa 1372 Query: 178 agt 180 ||| Sbjct: 1373 agt 1375
>gb|AF272647.1|AF272647 Drosophila subobscura strain pp14 RNA polymerase II largest subunit (RpII215) gene, complete cds Length = 7990 Score = 46.1 bits (23), Expect = 0.092 Identities = 44/51 (86%) Strand = Plus / Plus Query: 234 cttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||||||||| ||| | || ||| | |||||||| ||||||||||| Sbjct: 4647 cttccatgctatgggcggtcgtgagggtctcattgatacggctgtgaaaac 4697
>gb|AF272644.1|AF272644 Drosophila subobscura strain pp31 RNA polymerase II largest subunit (RpII215) gene, complete cds Length = 7941 Score = 46.1 bits (23), Expect = 0.092 Identities = 44/51 (86%) Strand = Plus / Plus Query: 234 cttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 ||||||||||||||| ||| | || ||| | |||||||| ||||||||||| Sbjct: 4597 cttccatgctatgggcggtcgtgagggtctcattgatacggctgtgaaaac 4647
>ref|XM_317690.2| Anopheles gambiae str. PEST ENSANGP00000010305 (ENSANGG00000007816), partial mRNA Length = 5631 Score = 46.1 bits (23), Expect = 0.092 Identities = 44/51 (86%) Strand = Plus / Plus Query: 234 cttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaac 284 |||||| || ||||||||| | ||||||||||| |||||||| || ||||| Sbjct: 2481 cttccacgccatgggtggtcgtgaaggtttgatcgatactgccgtcaaaac 2531
>gb|AY864878.1| Grifola sordulenta isolate AFTOL-ID 562 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1032 Score = 46.1 bits (23), Expect = 0.092 Identities = 77/95 (81%) Strand = Plus / Plus Query: 82 tgtgtcggacagcagaatgttgagggcaagcggattccatttggttttgttgatcgtaca 141 |||||||| ||||||| ||| || ||||| || ||||| |||||||| |||| ||| Sbjct: 910 tgtgtcggtcagcagagtgtggaaggcaaacgtattccctttggtttccgccatcgaaca 969 Query: 142 ttgccccacttcacgaaagatgactacggccccga 176 | ||||||||||| || ||||||||| ||||||| Sbjct: 970 ctcccccacttcaccaaggatgactacagccccga 1004
>gb|AY864870.1| Fomitiporia mediterranea isolate AFTOL-ID 688 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1820 Score = 46.1 bits (23), Expect = 0.092 Identities = 50/59 (84%) Strand = Plus / Plus Query: 220 ccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||| ||||| |||||||||||||||| ||| ||||||| || ||||| || ||||| Sbjct: 1026 ccacaagaattcttcttccatgctatggctggacgagaaggattaattgacacagctgt 1084
>dbj|AB077096.1| Basidiobolus ranarum RPB1 gene for DNA-dependent RNA polymerase II largest subunit, partial cds Length = 1008 Score = 46.1 bits (23), Expect = 0.092 Identities = 59/71 (83%) Strand = Plus / Plus Query: 55 ttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcgg 114 |||||||||||||| |||||| | || ||||| || || || || ||||| || ||||| Sbjct: 827 ttcattaatatttctcaaatgtcggcgtgtgttggccaacaaaacgttgaaggaaagcgc 886 Query: 115 attccatttgg 125 ||||||||||| Sbjct: 887 attccatttgg 897
>gb|DQ471145.1| Orbilia vinosa isolate AFTOL-ID 905 RNA polymerase II subunit 1 (RPB1) gene, partial sequence Length = 3123 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Plus Query: 134 atcgtacattgccccacttcacgaaagatgacta 167 ||||||| |||||||||||||| ||||| ||||| Sbjct: 2232 atcgtactttgccccacttcaccaaagacgacta 2265
>ref|XM_747667.1| Aspergillus fumigatus Af293 DNA-directed RNA polymerase I subunit Rpa190 (Afu1g13900) partial mRNA Length = 5043 Score = 44.1 bits (22), Expect = 0.37 Identities = 46/54 (85%) Strand = Plus / Plus Query: 234 cttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaacctc 287 |||||||||||||| ||| |||||||| | || |||||||| || |||||||| Sbjct: 3018 cttccatgctatggcgggtcgagaaggtcttatcgatactgccgtcaaaacctc 3071
>emb|BX649607.1| Aspergillus fumigatus BAC pilot project supercontig; segment 3/3 Length = 227448 Score = 44.1 bits (22), Expect = 0.37 Identities = 46/54 (85%) Strand = Plus / Plus Query: 234 cttccatgctatgggtggtagagaaggtttgattgatactgctgtgaaaacctc 287 |||||||||||||| ||| |||||||| | || |||||||| || |||||||| Sbjct: 64136 cttccatgctatggcgggtcgagaaggtcttatcgatactgccgtcaaaacctc 64189
>gb|AF395111.1| Ochromonas danica RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 3191 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Plus Query: 61 aatatttcgcaaatgactgcttgtgtcggacagcagaa 98 |||||||| || || | ||||||||||||||||||||| Sbjct: 2164 aatatttctcagattattgcttgtgtcggacagcagaa 2201
>gb|AF138996.2| Nebalia hessleri RNA polymerase II largest subunit mRNA, partial cds Length = 1873 Score = 44.1 bits (22), Expect = 0.37 Identities = 43/50 (86%) Strand = Plus / Plus Query: 229 tttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 |||| |||||| |||||||| || |||||||||| || ||||||||||| Sbjct: 1424 ttttacttccacgctatgggaggacgagaaggtttaatcgatactgctgt 1473
>dbj|AB097417.1| Furculomyces boomerangus RPB1 gene for DNA-dependent RNA polymerase II largest subunit, partial cds Length = 1024 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 235 ttccatgctatgggtggtagagaagg 260 ||||| |||||||||||||||||||| Sbjct: 995 ttccacgctatgggtggtagagaagg 1020
>gb|U73451.1|CTU73451 Cruznema tripartitum large subunit RNA polymerase II mRNA, partial cds Length = 1899 Score = 44.1 bits (22), Expect = 0.37 Identities = 43/50 (86%) Strand = Plus / Plus Query: 232 ttcttccatgctatgggtggtagagaaggtttgattgatactgctgtgaa 281 |||||||| |||||||| ||| | |||||| | || |||||||||||||| Sbjct: 124 ttcttccacgctatgggaggtcgtgaaggtcttatcgatactgctgtgaa 173
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 226 gaatttttcttccatgctatgggtgg 251 |||||||||||||| ||||||||||| Sbjct: 1543041 gaatttttcttccacgctatgggtgg 1543016
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Plus Query: 232 ttcttccatgctatgggtggtagagaaggtttgattga 269 |||||||| |||||||| ||||||||||| ||| |||| Sbjct: 978371 ttcttccacgctatgggaggtagagaaggattggttga 978408
>gb|DQ294601.1| Endogone pisiformis isolate AFTOL-ID-539 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 2901 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 335 ttatggtgaaatatgatggtactgttcgaaattcgctgggtgatgt 380 ||||||| ||||| || || || |||||||||||| |||||||||| Sbjct: 2143 ttatggtcaaatacgacggcacggttcgaaattcgttgggtgatgt 2188 Score = 44.1 bits (22), Expect = 0.37 Identities = 73/90 (81%) Strand = Plus / Plus Query: 172 cccgaaagtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaattt 231 ||||| |||||||||||||| |||||||| || || |||| |||| || || || || Sbjct: 1876 cccgagagtcgtgggtttgtcgagaactcatatctcagaggattgacgccgcaagagttc 1935 Query: 232 ttcttccatgctatgggtggtagagaaggt 261 |||||||| || ||||||||| | |||||| Sbjct: 1936 ttcttccacgcgatgggtggtcgtgaaggt 1965
>gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K10, complete sequence Length = 182660 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 259 ggtttgattgatactgctgtgaaaacctc 287 |||||||| |||||||| ||||||||||| Sbjct: 26668 ggtttgatcgatactgcggtgaaaacctc 26640
>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence Length = 1590432 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 259 ggtttgattgatactgctgtgaaaacctc 287 |||||||| |||||||| ||||||||||| Sbjct: 1376654 ggtttgatcgatactgcggtgaaaacctc 1376626
>gb|AC079815.9| Trypanosoma brucei chromosome 4 clone RPCI93-3M17, complete sequence Length = 144365 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 259 ggtttgattgatactgctgtgaaaacctc 287 |||||||| |||||||| ||||||||||| Sbjct: 54541 ggtttgatcgatactgcggtgaaaacctc 54513
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 259 ggtttgattgatactgctgtgaaaacctc 287 |||||||| |||||||| ||||||||||| Sbjct: 2131517 ggtttgatcgatactgcggtgaaaacctc 2131545 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 attgatactgctgtgaaaacctcc 288 |||||||| ||||||||||||||| Sbjct: 1505745 attgataccgctgtgaaaacctcc 1505768
>ref|XM_458147.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C11682g) partial mRNA Length = 4935 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 256 gaaggtttgattgatactgctgtgaaaac 284 |||||||| |||||||||||||| ||||| Sbjct: 2935 gaaggtttaattgatactgctgttaaaac 2963
>ref|XM_462102.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G13849g) partial mRNA Length = 4374 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 250 ggtagagaaggtttgattgatactgctgt 278 |||||||||||||| ||||||||||||| Sbjct: 2590 ggtagagaaggtttagttgatactgctgt 2618
>gb|AY602184.1| Protorhabditis sp. DF5055 RNA polymerase 2 gene, partial sequence Length = 2267 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||| |||||||| || ||||| ||| | |||||| |||| ||||||||||| Sbjct: 121 gaattcttcttccacgcgatgggaggtcgcgaaggtctgatcgatactgctgt 173
>gb|AY602183.1| Rhabditella axei RNA polymerase 2 gene, partial cds Length = 2484 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Plus Query: 226 gaatttttcttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||| |||||||| |||||||| || |||||||| | || ||||||||||| Sbjct: 177 gaattcttcttccacgctatgggaggaagagaaggacttatcgatactgctgt 229
>gb|AY305624.1| Trachyiulus nordquisti clone TnorBpol RNA polymerase II largest subunit mRNA, partial cds Length = 1111 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Plus Query: 143 tgccccacttcacgaaagatgactacggccccgaaagtcgtgggtttgttgagaactcct 202 |||||||||||| || || || ||||| ||||| ||||||||||| || ||||| || | Sbjct: 576 tgccccacttcatcaaggacgattacggtcccgagagtcgtgggttcgtagagaattcgt 635 Query: 203 acctt 207 ||||| Sbjct: 636 acctt 640
>gb|AY305569.1| Lepas anserifera clone LeanApol RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 82 tgtgtcggacagcagaatgttgagggcaagcggattccatt 122 ||||||||||||||||| ||||| || ||||| || ||||| Sbjct: 740 tgtgtcggacagcagaacgttgaaggaaagcgaatcccatt 780
>gb|AY945101.1| Chelostoma fuliginosum voucher Chfu496 RNA polymerase II gene, partial cds Length = 842 Score = 42.1 bits (21), Expect = 1.4 Identities = 60/73 (82%) Strand = Plus / Plus Query: 57 cattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcggat 116 |||||||||||| ||| | | ||||||||| || || ||||| || ||||| || || || Sbjct: 719 cattaatatttcacaagttattgcttgtgtgggtcaacagaacgtcgagggtaaacgaat 778 Query: 117 tccatttggtttt 129 ||| ||||||||| Sbjct: 779 tccttttggtttt 791
>ref|XM_817068.1| Trypanosoma brucei TREU927 clone RPCI93-10K10 RNA polymerase IIA largest subunit (Tb927.8.7400) partial mRNA Length = 5298 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 259 ggtttgattgatactgctgtgaaaacctc 287 |||||||| |||||||| ||||||||||| Sbjct: 2473 ggtttgatcgatactgcggtgaaaacctc 2501
>ref|XM_821361.1| Trypanosoma brucei TREU927 clone RPCI93-3M17 RNA polymerase IIA largest subunit (Tb927.4.5020) partial mRNA Length = 5298 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 259 ggtttgattgatactgctgtgaaaacctc 287 |||||||| |||||||| ||||||||||| Sbjct: 2473 ggtttgatcgatactgcggtgaaaacctc 2501
>ref|XM_384467.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04291.1) partial mRNA Length = 5085 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 243 tatgggtggtagagaaggtttgattgatactgc 275 ||||| |||| |||||||| ||||||||||||| Sbjct: 3003 tatggctggtcgagaaggtctgattgatactgc 3035
>ref|XM_675112.1| Plasmodium berghei strain ANKA RNA polymerase I (PB000192.02.0) partial mRNA Length = 7734 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 tatgatggtactgttcgaaat 366 ||||||||||||||||||||| Sbjct: 5008 tatgatggtactgttcgaaat 5028
>emb|X73293.1|MVRPO M.vannielii genes rpoH, rpoB and rpoA Length = 7960 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 235 ttccatgctatgggtggtagagaaggttt 263 ||||| || |||||||||||||||||||| Sbjct: 6502 ttccacgcaatgggtggtagagaaggttt 6530
>emb|X13492.1|TBPOLI01 T.brucei RNA polymerase II largest subunit (Trp5.9) gene, complete cds Length = 5429 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 259 ggtttgattgatactgctgtgaaaacctc 287 |||||||| |||||||| ||||||||||| Sbjct: 2534 ggtttgatcgatactgcggtgaaaacctc 2562
>emb|X13491.1|TBPOLIIA T.brucei RNA polymerase II largest subunit (Trp4.8) gene, complete cds Length = 5429 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 259 ggtttgattgatactgctgtgaaaacctc 287 |||||||| |||||||| ||||||||||| Sbjct: 2534 ggtttgatcgatactgcggtgaaaacctc 2562
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 250 ggtagagaaggtttgattgatactgctgt 278 |||||||||||||| ||||||||||||| Sbjct: 1067133 ggtagagaaggtttagttgatactgctgt 1067105
>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii Length = 1592360 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 256 gaaggtttgattgatactgctgtgaaaac 284 |||||||| |||||||||||||| ||||| Sbjct: 965107 gaaggtttaattgatactgctgttaaaac 965135
>gb|DQ083405.1| Nosema sp. PX1 DNA-dependent RNA polymerase II largest subunit gene, partial cds Length = 1329 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 224 aggaatttttcttccatgctatgggtggtagagaaggtttgattgatac 272 ||||||| || || ||||||||||| ||| |||||||| | |||||||| Sbjct: 549 aggaattcttttttcatgctatgggaggtcgagaaggtcttattgatac 597
>emb|AJ278955.1|POV278955 Pleistophora ovariae partial rpb1 gene for RNA polymerase II largest subunit Length = 1878 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 232 ttcttccatgctatgggtggtagagaagg 260 ||||||||||| |||||||| |||||||| Sbjct: 1150 ttcttccatgcgatgggtggaagagaagg 1178
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Minus Query: 211 ggtctgacaccacaggaatttttcttccatgctatgggtggtagagaaggtttgattgat 270 ||||| ||||| ||||| | |||||||| || ||||||||||| |||||| | ||||| Sbjct: 947168 ggtctaacaccgcaggagtacttcttccacgccatgggtggtagggaaggtctcgttgat 947109 Query: 271 actgc 275 ||||| Sbjct: 947108 actgc 947104
>gb|DQ294593.1| Smittium culisetae isolate AFTOL-ID-29 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 2952 Score = 42.1 bits (21), Expect = 1.4 Identities = 81/101 (80%) Strand = Plus / Plus Query: 178 agtcgtgggtttgttgagaactcctaccttcgaggtctgacaccacaggaatttttcttc 237 |||||||||||||| ||||| || || || | || |||| ||||| || |||| ||| Sbjct: 2166 agtcgtgggtttgtggagaattcgtatctgagtggattgacgccacaagagttttatttc 2225 Query: 238 catgctatgggtggtagagaaggtttgattgatactgctgt 278 || || ||||| ||| | ||||| ||||||||||||||||| Sbjct: 2226 cacgcaatgggaggtcgtgaagggttgattgatactgctgt 2266
>gb|DQ294584.1| Polychytrium aggregatum isolate AFTOL-ID-24 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 3389 Score = 42.1 bits (21), Expect = 1.4 Identities = 54/65 (83%) Strand = Plus / Plus Query: 55 ttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcgg 114 ||||| || |||||||| ||||| | |||||||| || || ||||| ||||||||||| Sbjct: 2427 ttcatcaacatttcgcagatgacaggctgtgtcggccaacaaaatgtcgagggcaagcgt 2486 Query: 115 attcc 119 ||||| Sbjct: 2487 attcc 2491
>gb|J04841.1|TRBPOLIIBA T.brucei RNA polymerase IIB largest subunit (rpII197B) gene, complete cds Length = 6214 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 259 ggtttgattgatactgctgtgaaaacctc 287 |||||||| |||||||| ||||||||||| Sbjct: 3189 ggtttgatcgatactgcggtgaaaacctc 3217
>gb|J03157.1|TRBPILIIA T.brucei RNA polymerase IIA largest subunit (rpII197A) gene, complete cds Length = 6274 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 259 ggtttgattgatactgctgtgaaaacctc 287 |||||||| |||||||| ||||||||||| Sbjct: 3249 ggtttgatcgatactgcggtgaaaacctc 3277
>gb|DQ234571.1| Tilletiaria anomala isolate AFTOL-ID 865 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 1706 Score = 40.1 bits (20), Expect = 5.7 Identities = 59/72 (81%) Strand = Plus / Plus Query: 54 tttcattaatatttcgcaaatgactgcttgtgtcggacagcagaatgttgagggcaagcg 113 |||||| || || ||||||||| |||| || ||||| || ||| |||||||||||||| Sbjct: 1581 tttcatcaacatctcgcaaatgtctgcctgcgtcgggcaacagtccgttgagggcaagcg 1640 Query: 114 gattccatttgg 125 ||||| ||||| Sbjct: 1641 tattccgtttgg 1652
>gb|AC154047.2| Drosophila melanogaster clone BACR26B05, complete sequence Length = 162638 Score = 40.1 bits (20), Expect = 5.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 235 ttccatgctatgggtggtagagaaggtttgattgatactgctgt 278 ||||| |||||||||||| | |||||| | || ||||||||||| Sbjct: 101013 ttccacgctatgggtggtcgtgaaggtcttatcgatactgctgt 101056 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,999,750 Number of Sequences: 3902068 Number of extensions: 3999750 Number of successful extensions: 78357 Number of sequences better than 10.0: 319 Number of HSP's better than 10.0 without gapping: 316 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 77418 Number of HSP's gapped (non-prelim): 914 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
