ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33g09 |
|---|---|
| Clone Library Name | barley_pub |
>LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG| Length = 931 Score = 69.3 bits (168), Expect = 4e-12 Identities = 30/45 (66%), Positives = 41/45 (91%) Frame = +3 Query: 294 MAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAEGKVAADQLQL 428 M+Q+NWEADKMLDVYI+DYL+KR+L+ TA+AF AEGKV++D + + Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAI 45
>YQKA_SCHPO (O74522) Protein C1494.10 in chromosome III| Length = 964 Score = 41.2 bits (95), Expect = 0.001 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +3 Query: 279 TAPSRMAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAEGKV 407 +AP+ + N ++ LD YIYDY +K N + A+AF+ E K+ Sbjct: 22 SAPASSSLGNSHPNESLDYYIYDYFVKHNFEEAAQAFLRESKI 64
>SSBP2_MOUSE (Q9CYZ8) Single-stranded DNA-binding protein 2 (Sequence-specific| single-stranded-DNA-binding protein 2) Length = 361 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/43 (34%), Positives = 27/43 (62%) Frame = +3 Query: 270 GRGTAPSRMAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAE 398 G+G + S S+ +A + L +Y+Y+YLL Q +A+ F++E Sbjct: 3 GKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSE 45
>SSBP2_HUMAN (P81877) Single-stranded DNA-binding protein 2 (Sequence-specific| single-stranded-DNA-binding protein 2) Length = 361 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/43 (34%), Positives = 27/43 (62%) Frame = +3 Query: 270 GRGTAPSRMAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAE 398 G+G + S S+ +A + L +Y+Y+YLL Q +A+ F++E Sbjct: 3 GKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSE 45
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase| (EC 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 32.3 bits (72), Expect = 0.54 Identities = 18/44 (40%), Positives = 20/44 (45%) Frame = +2 Query: 104 EPSHPPARQHPGRALAPTARSPARTQRAAPPASRGRSSITVGRP 235 EP PP P A SPA TQ PP+ G+S GRP Sbjct: 534 EPGEPPLFSRPSIPKTSRAVSPAATQ-PPPPSGAGKSGDETGRP 576
>XRCC1_HUMAN (P18887) DNA-repair protein XRCC1 (X-ray repair cross-complementing| protein 1) Length = 633 Score = 32.3 bits (72), Expect = 0.54 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +2 Query: 107 PSHPPARQHPGRALAPTARSPARTQRAAPPASRGRSSITVGRP 235 PS PPA+ P P +P RT AP +R + ++T G+P Sbjct: 258 PSKPPAQLSPSVPKRPKLPAPTRTPATAPVPARAQGAVT-GKP 299
>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase| (EC 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3262 Score = 32.3 bits (72), Expect = 0.54 Identities = 18/44 (40%), Positives = 20/44 (45%) Frame = +2 Query: 104 EPSHPPARQHPGRALAPTARSPARTQRAAPPASRGRSSITVGRP 235 EP PP P A SPA TQ PP+ G+S GRP Sbjct: 534 EPGEPPLFSRPSTPKTSRAVSPAATQ-PPPPSGAGKSGDEPGRP 576
>KCY_SULSO (Q9UX81) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine| monophosphate kinase) (CMP kinase) Length = 189 Score = 31.2 bits (69), Expect = 1.2 Identities = 14/28 (50%), Positives = 24/28 (85%), Gaps = 1/28 (3%) Frame = +3 Query: 288 SRMAQSNWEADKMLDVYIYDYLLK-RNL 368 +R+A+SN++ DKM+D I++Y+L+ RNL Sbjct: 50 NRVAESNFDIDKMVDKKIHEYVLRERNL 77
>SSBP3_MOUSE (Q9D032) Single-stranded DNA-binding protein 3 (Sequence-specific| single-stranded-DNA-binding protein) (Lck-associated signal transducer) Length = 388 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/43 (34%), Positives = 27/43 (62%) Frame = +3 Query: 270 GRGTAPSRMAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAE 398 G+G+A S+ +A + L +Y+Y+YLL Q +A+ F++E Sbjct: 5 GKGSA----VPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSE 43
>SSBP3_HUMAN (Q9BWW4) Single-stranded DNA-binding protein 3 (Sequence-specific| single-stranded-DNA-binding protein) Length = 388 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/43 (34%), Positives = 27/43 (62%) Frame = +3 Query: 270 GRGTAPSRMAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAE 398 G+G+A S+ +A + L +Y+Y+YLL Q +A+ F++E Sbjct: 5 GKGSA----VPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSE 43
>SSBP4_HUMAN (Q9BWG4) Single-stranded DNA-binding protein 4| Length = 385 Score = 30.0 bits (66), Expect = 2.7 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +3 Query: 261 APPGRGTAPSRMAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAE 398 A G+G+A S+ +A + L +Y+Y+YLL Q +A+ F++E Sbjct: 3 AKGGKGSA----VPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSE 44
>HMUS_YERPE (Q56990) Hemin transport protein hmuS| Length = 345 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/48 (41%), Positives = 24/48 (50%) Frame = +3 Query: 279 TAPSRMAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAEGKVAADQL 422 TA S W A M DV+ + LLKRN T +AF A G A Q+ Sbjct: 179 TADDATVDSEWRA--MTDVHQFFQLLKRNNLTRQQAFRAVGDDLAYQV 224
>SSBP3_RAT (Q9R050) Single-stranded DNA-binding protein 3 (Sequence-specific| single-stranded-DNA-binding protein) Length = 361 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/43 (34%), Positives = 27/43 (62%) Frame = +3 Query: 270 GRGTAPSRMAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAE 398 G+G+A S+ +A + L +Y+Y+YLL Q +A+ F++E Sbjct: 5 GKGSA----VPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSE 43
>SSBP3_CHICK (Q98948) Single-stranded DNA-binding protein 3 (Sequence-specific| single-stranded-DNA-binding protein) Length = 368 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/43 (34%), Positives = 27/43 (62%) Frame = +3 Query: 270 GRGTAPSRMAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAE 398 G+G+A S+ +A + L +Y+Y+YLL Q +A+ F++E Sbjct: 5 GKGSA----VPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSE 43
>HEMS_YEREN (P31517) Hemin transport protein hemS| Length = 345 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/48 (39%), Positives = 24/48 (50%) Frame = +3 Query: 279 TAPSRMAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAEGKVAADQL 422 TA + W A M DV+ + LLKRN T +AF A G A Q+ Sbjct: 179 TATDEAVDAEWRA--MTDVHQFFQLLKRNNLTRQQAFRAVGNDLAYQV 224
>YLL2_EBV (P03199) Hypothetical protein BLLF2| Length = 148 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 24/65 (36%) Frame = +2 Query: 116 PPARQHP--------------------GRALAPTARSPARTQRAAPPASR----GRSSIT 223 PP RQHP GR ++P AR P +R PP ++ RS Sbjct: 3 PPVRQHPAQAPPAKRQALETVPHPQNRGRLMSPKARPPKMQRRPRPPVAKRRRFPRSPQQ 62 Query: 224 VGRPV 238 V RP+ Sbjct: 63 VERPI 67
>FLO8_YEAST (P40068) Transcriptional activator FLO8 (Protein PDH5)| Length = 799 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +3 Query: 279 TAPSRMAQSNWEADKMLDVYIYDYLLKRNLQTTAKAFMAEGKVAADQLQ 425 TA + + L+ YI+D+L K +L+ TA AF + + D+ Q Sbjct: 61 TAENSDLKEKMNCKNTLNEYIFDFLTKSSLKNTAAAFAQDAHLDRDKGQ 109
>FOXQ1_RAT (Q63244) Forkhead box protein Q1 (Hepatocyte nuclear factor 3| forkhead homolog 1) (HNF-3/forkhead-like protein 1) (HFH-1) (Fragment) Length = 392 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 134 PGRALAPTARSPARTQRAAPPASRGRSSITV 226 P +P ARSPAR + + PAS+ SS + Sbjct: 232 PTAGSSPIARSPARQEEGSSPASKFSSSFAI 262
>FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear factor 3| forkhead homolog 1) (HNF-3/forkhead-like protein 1) (HFH-1) (HFH-1l) Length = 400 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 134 PGRALAPTARSPARTQRAAPPASRGRSSITV 226 P +P ARSPAR + + PAS+ SS + Sbjct: 240 PAARSSPIARSPARQEERSSPASKFSSSFAI 270
>RREB1_HUMAN (Q92766) RAS-responsive element-binding protein 1 (RREB-1)| (Raf-responsive zinc finger protein LZ321) Length = 755 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/46 (39%), Positives = 21/46 (45%) Frame = +2 Query: 104 EPSHPPARQHPGRALAPTARSPARTQRAAPPASRGRSSITVGRPVA 241 E S PPA A +PT + PART + RGR RP A Sbjct: 194 ESSEPPAPASSPEAASPTEQGPARTSK-----KRGRKRGMRSRPRA 234
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 107 PSHPPARQHPGRALAPTARSPARTQRAAPPASRGRSSITVG 229 P+H PA+Q G+ +RSP TQ A R++ G Sbjct: 245 PAHSPAKQPLGKPEQERSRSPGATQSGPRQAEAARATSVPG 285
>SIRT1_MOUSE (Q923E4) NAD-dependent deacetylase sirtuin-1 (EC 3.5.1.-)| (SIR2alpha) (mSIR2a) (Sir2) (SIR2-like protein 1) Length = 737 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = +2 Query: 104 EPSHPPARQHPGRALAPTARSPARTQRAAPPASRGRSSITVGRPVA 241 +P+ P R+ P R RSP A PA+ G + + P A Sbjct: 26 QPADEPLRKRPRRDGPGLGRSPGEPSAAVAPAAAGCEAASAAAPAA 71
>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 543 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +2 Query: 107 PSHPPARQHPGRALAPTARSPARTQRAAPPASR---GRSS 217 P+ P + P RA P A SPAR A P SR GRSS Sbjct: 43 PARTPPQASPARAPPPQA-SPARASPARAPPSRSSSGRSS 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,046,442 Number of Sequences: 219361 Number of extensions: 494489 Number of successful extensions: 2228 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2067 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2224 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
