ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK108706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
2ref|XM_473135.1| Oryza sativa (japonica cultivar-group), predic... 163 6e-37
3ref|XM_468366.1| Oryza sativa (japonica cultivar-group), mRNA 131 2e-27
4dbj|AK103520.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
5emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4,... 82 2e-12
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
7emb|AJ872257.1| Festuca glaucescens x Lolium multiflorum microsa... 72 2e-09
8ref|XM_470511.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
9emb|AJ620906.1| Antirrhinum majus mRNA for STY-L protein 66 1e-07
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
11dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
12dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
13dbj|AK111575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
14ref|NM_179864.2| Arabidopsis thaliana unknown protein AT2G32700 ... 42 1.5
15ref|NM_001036389.1| Arabidopsis thaliana unknown protein AT2G327... 42 1.5
16ref|NM_179861.2| Arabidopsis thaliana unknown protein AT2G32700 ... 42 1.5
17ref|NM_179863.1| Arabidopsis thaliana unknown protein AT2G32700 ... 42 1.5
18ref|NM_179862.1| Arabidopsis thaliana unknown protein AT2G32700 ... 42 1.5
19ref|NM_128829.2| Arabidopsis thaliana unknown protein AT2G32700 ... 42 1.5
20emb|AL935255.1| Lactobacillus plantarum strain WCFS1 complete ge... 42 1.5
21gb|AF367306.1| Arabidopsis thaliana At2g32700/F24L7.16 mRNA, com... 42 1.5
22emb|BX819285.1|CNS0AAEP Arabidopsis thaliana Full-length cDNA Co... 42 1.5
23emb|BX842002.1|CNS09YA5 Arabidopsis thaliana Full-length cDNA Co... 42 1.5
24gb|AF416708.1| Lactobacillus plantarum mtsCBA gene cluster, comp... 42 1.5
25gb|BT002219.1| Arabidopsis thaliana At2g32700/F24L7.16 mRNA, com... 42 1.5
26gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.5
27gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.9
28emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.9
29emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
30gb|U75363.1|RPU75363 Rhodopseudomonas palustris cyclohex-1-ene-1... 40 5.9
31dbj|AK101152.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
32dbj|AP001360.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.9
33dbj|AP001091.5| Homo sapiens genomic DNA, chromosome 18p clone:R... 40 5.9 
>dbj|AK108706.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-A06, full
           insert sequence
          Length = 1517

 Score =  167 bits (84), Expect = 4e-38
 Identities = 133/148 (89%), Gaps = 1/148 (0%)
 Strand = Plus / Plus

                                                                       
Query: 292 gaatggcgcagagcaattgggaagcggataagatgctcgatgtgtatatctacgactact 351
           |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |
Sbjct: 364 gaatggcgcagagcaactgggaagcggataagatgcttgatgtgtatatctatgactatt 423

                                                                       
Query: 352 tgctcaagcggaacctccagacgaccgccaaggcgttcatggcggaggggaaggttgctg 411
           |||| ||||||||  | ||| |||| |||||| ||||||||||||||||||||||  | |
Sbjct: 424 tgctgaagcggaatttgcaggcgacggccaagtcgttcatggcggaggggaaggtctccg 483

                                       
Query: 412 ccga-ccagttgcaattgatgctcctgg 438
           |||| |||||||||||||||||||||||
Sbjct: 484 ccgatccagttgcaattgatgctcctgg 511
to top
>ref|XM_473135.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2382

 Score =  163 bits (82), Expect = 6e-37
 Identities = 131/146 (89%), Gaps = 1/146 (0%)
 Strand = Plus / Plus

                                                                       
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgtgtatatctacgactacttg 353
           |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct: 1   atggcgcagagcaactgggaagcggataagatgcttgatgtgtatatctatgactatttg 60

                                                                       
Query: 354 ctcaagcggaacctccagacgaccgccaaggcgttcatggcggaggggaaggttgctgcc 413
           || ||||||||  | ||| |||| |||||| ||||||||||||||||||||||  | |||
Sbjct: 61  ctgaagcggaatttgcaggcgacggccaagtcgttcatggcggaggggaaggtctccgcc 120

                                     
Query: 414 ga-ccagttgcaattgatgctcctgg 438
           || |||||||||||||||||||||||
Sbjct: 121 gatccagttgcaattgatgctcctgg 146
to top
>ref|XM_468366.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3146

 Score =  131 bits (66), Expect = 2e-27
 Identities = 127/146 (86%), Gaps = 1/146 (0%)
 Strand = Plus / Plus

                                                                       
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgtgtatatctacgactacttg 353
           |||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||  ||
Sbjct: 338 atggcgcagagcaactgggaagcagataagatgcttgatgtgtatatctatgactatctg 397

                                                                       
Query: 354 ctcaagcggaacctccagacgaccgccaaggcgttcatggcggaggggaaggttgctgcc 413
           || ||| ||||| | ||| |||| |||||||| |||||||||||||| ||||| || || 
Sbjct: 398 ctgaagaggaacttgcagtcgacggccaaggctttcatggcggagggaaaggtcgccgct 457

                                     
Query: 414 ga-ccagttgcaattgatgctcctgg 438
           || ||||| |||||||||||||||||
Sbjct: 458 gatccagtcgcaattgatgctcctgg 483
to top
>dbj|AK103520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131I05, full
           insert sequence
          Length = 3146

 Score =  131 bits (66), Expect = 2e-27
 Identities = 127/146 (86%), Gaps = 1/146 (0%)
 Strand = Plus / Plus

                                                                       
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgtgtatatctacgactacttg 353
           |||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||  ||
Sbjct: 338 atggcgcagagcaactgggaagcagataagatgcttgatgtgtatatctatgactatctg 397

                                                                       
Query: 354 ctcaagcggaacctccagacgaccgccaaggcgttcatggcggaggggaaggttgctgcc 413
           || ||| ||||| | ||| |||| |||||||| |||||||||||||| ||||| || || 
Sbjct: 398 ctgaagaggaacttgcagtcgacggccaaggctttcatggcggagggaaaggtcgccgct 457

                                     
Query: 414 ga-ccagttgcaattgatgctcctgg 438
           || ||||| |||||||||||||||||
Sbjct: 458 gatccagtcgcaattgatgctcctgg 483
to top
>emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065L13,
             complete sequence
          Length = 103039

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Plus

                                                                         
Query: 330   gatgtgtatatctacgactacttgctcaagcggaacctccagacgaccgccaaggcgttc 389
             |||||||||||||| ||||| ||||| ||||||||  | ||| |||| |||||| |||||
Sbjct: 78194 gatgtgtatatctatgactatttgctgaagcggaatttgcaggcgacggccaagtcgttc 78253

                              
Query: 390   atggcggaggggaaggt 406
             |||||||||||||||||
Sbjct: 78254 atggcggaggggaaggt 78270



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                     
Query: 287   cagccgaatggcgcagagcaattgggaagcggataagatg 326
             |||| |||||||||||||||| ||||||||||||||||||
Sbjct: 78064 cagcggaatggcgcagagcaactgggaagcggataagatg 78103
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Plus

                                                                            
Query: 330      gatgtgtatatctacgactacttgctcaagcggaacctccagacgaccgccaaggcgttc 389
                |||||||||||||| ||||| ||||| ||||||||  | ||| |||| |||||| |||||
Sbjct: 25500701 gatgtgtatatctatgactatttgctgaagcggaatttgcaggcgacggccaagtcgttc 25500760

                                 
Query: 390      atggcggaggggaaggt 406
                |||||||||||||||||
Sbjct: 25500761 atggcggaggggaaggt 25500777



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 287      cagccgaatggcgcagagcaattgggaagcggataagatg 326
                |||| |||||||||||||||| ||||||||||||||||||
Sbjct: 25500571 cagcggaatggcgcagagcaactgggaagcggataagatg 25500610



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 335      gtatatctacgactacttgc 354
                ||||||||||||||||||||
Sbjct: 24382010 gtatatctacgactacttgc 24382029
to top
>emb|AJ872257.1| Festuca glaucescens x Lolium multiflorum microsatellite DNA, clone
           B4-C10
          Length = 464

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 371 gacgaccgccaaggcgttcatggcggaggggaaggt 406
           ||||||||||||||||||||||||||||||||||||
Sbjct: 1   gacgaccgccaaggcgttcatggcggaggggaaggt 36
to top
>ref|XM_470511.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2602

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgtgtatatctacgactac 350
           ||||||| |||||||||||| || || |||||||| |||||||| ||||||||||||
Sbjct: 248 atggcgcggagcaattgggaggcagacaagatgctggatgtgtacatctacgactac 304
to top
>emb|AJ620906.1| Antirrhinum majus mRNA for STY-L protein
          Length = 2865

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgt 334
           ||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 230 atggcgcagagtaattgggaagcggataagatgcttgatgt 270
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                            
Query: 330      gatgtgtatatctacgactacttgctcaagcggaacctccagacgaccgccaaggcgttc 389
                |||||||||||||| |||||  |||| ||| ||||| | ||| |||| |||||||| |||
Sbjct: 34890812 gatgtgtatatctatgactatctgctgaagaggaacttgcagtcgacggccaaggctttc 34890753

                                 
Query: 390      atggcggaggggaaggt 406
                ||||||||||| |||||
Sbjct: 34890752 atggcggagggaaaggt 34890736



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 294      atggcgcagagcaattgggaagcggataagatg 326
                |||||||||||||| |||||||| |||||||||
Sbjct: 34890932 atggcgcagagcaactgggaagcagataagatg 34890900
to top
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0053L11
          Length = 147123

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                          
Query: 330    gatgtgtatatctacgactacttgctcaagcggaacctccagacgaccgccaaggcgttc 389
              |||||||||||||| |||||  |||| ||| ||||| | ||| |||| |||||||| |||
Sbjct: 112407 gatgtgtatatctatgactatctgctgaagaggaacttgcagtcgacggccaaggctttc 112348

                               
Query: 390    atggcggaggggaaggt 406
              ||||||||||| |||||
Sbjct: 112347 atggcggagggaaaggt 112331



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 294    atggcgcagagcaattgggaagcggataagatg 326
              |||||||||||||| |||||||| |||||||||
Sbjct: 112527 atggcgcagagcaactgggaagcagataagatg 112495
to top
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_E04
          Length = 118192

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                         
Query: 330   gatgtgtatatctacgactacttgctcaagcggaacctccagacgaccgccaaggcgttc 389
             |||||||||||||| |||||  |||| ||| ||||| | ||| |||| |||||||| |||
Sbjct: 50309 gatgtgtatatctatgactatctgctgaagaggaacttgcagtcgacggccaaggctttc 50250

                              
Query: 390   atggcggaggggaaggt 406
             ||||||||||| |||||
Sbjct: 50249 atggcggagggaaaggt 50233



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 294   atggcgcagagcaattgggaagcggataagatg 326
             |||||||||||||| |||||||| |||||||||
Sbjct: 50429 atggcgcagagcaactgggaagcagataagatg 50397
to top
>dbj|AK111575.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079H15, full
           insert sequence
          Length = 2812

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgtgtatatctacgactac 350
           ||||||| |||||||||||| || || |||||||| |||||||| ||||||||||||
Sbjct: 189 atggcgcggagcaattgggaggcagacaagatgctggatgtgtacatctacgactac 245
to top
>ref|NM_179864.2| Arabidopsis thaliana unknown protein AT2G32700 transcript variant
           AT2G32700.5 mRNA, complete cds
          Length = 2830

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgt 334
           ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 171 atggctcagagtaattgggaagctgacaagatgcttgatgt 211
to top
>ref|NM_001036389.1| Arabidopsis thaliana unknown protein AT2G32700 transcript variant
           AT2G32700.6 mRNA, complete cds
          Length = 2884

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgt 334
           ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 226 atggctcagagtaattgggaagctgacaagatgcttgatgt 266
to top
>ref|NM_179861.2| Arabidopsis thaliana unknown protein AT2G32700 transcript variant
           AT2G32700.2 mRNA, complete cds
          Length = 2885

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgt 334
           ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 226 atggctcagagtaattgggaagctgacaagatgcttgatgt 266
to top
>ref|NM_179863.1| Arabidopsis thaliana unknown protein AT2G32700 transcript variant
           AT2G32700.4 mRNA, complete cds
          Length = 2903

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgt 334
           ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 244 atggctcagagtaattgggaagctgacaagatgcttgatgt 284
to top
>ref|NM_179862.1| Arabidopsis thaliana unknown protein AT2G32700 transcript variant
           AT2G32700.3 mRNA, complete cds
          Length = 3014

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgt 334
           ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 355 atggctcagagtaattgggaagctgacaagatgcttgatgt 395
to top
>ref|NM_128829.2| Arabidopsis thaliana unknown protein AT2G32700 transcript variant
           AT2G32700.1 mRNA, complete cds
          Length = 2927

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgt 334
           ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 268 atggctcagagtaattgggaagctgacaagatgcttgatgt 308
to top
>emb|AL935255.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 4/11
          Length = 269050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 313   aagcggataagatgctcgatg 333
             |||||||||||||||||||||
Sbjct: 15050 aagcggataagatgctcgatg 15030
to top
>gb|AF367306.1| Arabidopsis thaliana At2g32700/F24L7.16 mRNA, complete cds
          Length = 2652

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgt 334
           ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 268 atggctcagagtaattgggaagctgacaagatgcttgatgt 308
to top
>emb|BX819285.1|CNS0AAEP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB64ZB04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 2787

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgt 334
           ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 271 atggctcagagtaattgggaagctgacaagatgcttgatgt 311
to top
>emb|BX842002.1|CNS09YA5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB66ZB07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1125

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgt 334
           ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 226 atggctcagagtaattgggaagctgacaagatgcttgatgt 266
to top
>gb|AF416708.1| Lactobacillus plantarum mtsCBA gene cluster, complete sequence
          Length = 3281

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 313  aagcggataagatgctcgatg 333
            |||||||||||||||||||||
Sbjct: 3063 aagcggataagatgctcgatg 3043
to top
>gb|BT002219.1| Arabidopsis thaliana At2g32700/F24L7.16 mRNA, complete cds
          Length = 2364

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 294 atggcgcagagcaattgggaagcggataagatgctcgatgt 334
           ||||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 1   atggctcagagtaattgggaagctgacaagatgcttgatgt 41
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 222     ccgtcggccgccccgtcgccc 242
               |||||||||||||||||||||
Sbjct: 3464141 ccgtcggccgccccgtcgccc 3464161
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 195     cagcgagccgcggccgatcg 214
               ||||||||||||||||||||
Sbjct: 1719943 cagcgagccgcggccgatcg 1719924
to top
>emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genome; segment 3/16
          Length = 349260

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   cagcgagccgcggccgatcg 214
             ||||||||||||||||||||
Sbjct: 22685 cagcgagccgcggccgatcg 22704
to top
>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30,
             complete sequence
          Length = 141128

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   gtatatctacgactacttgc 354
             ||||||||||||||||||||
Sbjct: 98421 gtatatctacgactacttgc 98440
to top
>gb|U75363.1|RPU75363 Rhodopseudomonas palustris cyclohex-1-ene-1-carboxyl-CoA hydratase
            (badk), cyclohex-1-ene-1-carboxylate CoA ligase (aliA),
            cyclohexanecarboxyl-CoA dehydrogenase (badJ),
            2-ketocyclohexanecarboxyl-CoA hydrolase (badI), putative
            2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (badH),
            putative regulatory protein (badR), putative
            NADPH:quinone oxidoreductase (badC), and benzoyl-CoA
            reductase subunits (badD), (badE), (badF) and (badG)
            genes, complete cds
          Length = 12058

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  cagcgagccgcggccgatcg 214
            ||||||||||||||||||||
Sbjct: 3027 cagcgagccgcggccgatcg 3046
to top
>dbj|AK101152.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027C19, full
           insert sequence
          Length = 3156

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 309 tgggaagcggataagatgctcgatgtgtatatctacgactactt 352
           ||||| |||||||||||||| ||||| || || || ||||||||
Sbjct: 303 tgggaggcggataagatgctggatgtctacatatatgactactt 346
to top
>dbj|AP001360.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-831A10, complete
              sequence
          Length = 190766

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    tggcgcagagcaattgggaa 314
              ||||||||||||||||||||
Sbjct: 112643 tggcgcagagcaattgggaa 112624
to top
>dbj|AP001091.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-713N19, complete
             sequences
          Length = 207785

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 270   ggccgcgggaccgcccccagccga 293
             ||||||||| ||||||||||||||
Sbjct: 64993 ggccgcggggccgcccccagccga 65016


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,265,205
Number of Sequences: 3902068
Number of extensions: 1265205
Number of successful extensions: 25104
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24928
Number of HSP's gapped (non-prelim): 172
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top