ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33g05 |
|---|---|
| Clone Library Name | barley_pub |
>ARFG3_MOUSE (Q9D8S3) ADP-ribosylation factor GTPase-activating protein 3 (ARF| GAP 3) Length = 525 Score = 31.6 bits (70), Expect = 1.1 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Frame = +1 Query: 115 PGEAAPSGMYYHTKRKPSDPISGLSLP----GAKMVGNWGFGSVTKDWESVNARKFQ 273 PG+AAP+ + K+KP+ GL GA+ + N F + K ++V+ RK Q Sbjct: 203 PGKAAPAEVSSIIKKKPNQAKKGLGAKKGSLGAQKLTNTSFTEIEKQAQAVDKRKEQ 259
>RBS3_FRIAG (O22573) Ribulose bisphosphate carboxylase small chain 3,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3) Length = 179 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +1 Query: 79 RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVN 258 RA+P A+M VAP S + +KP+ +S L G ++ K W V Sbjct: 16 RAAPAQASM-VAPFVGLKSASAFPVTQKPATGLSTLPSNGGRV-------QCMKVWPIVG 67 Query: 259 ARKFQFINFLSTL 297 +KF+ +++L TL Sbjct: 68 LKKFETLSYLPTL 80
>RBS_MANES (Q42915) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 182 Score = 31.2 bits (69), Expect = 1.4 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = +1 Query: 79 RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVN 258 R SP A M VAP S + T RK + I+ ++ G K+ K W ++ Sbjct: 16 RVSPAQATM-VAPFTGLKSTPVFPTTRKTNSDITSITSNGGKV-------QCMKVWPTLG 67 Query: 259 ARKFQFINFLSTLRK 303 +KF+ +++L L + Sbjct: 68 MKKFETLSYLPPLTR 82
>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2014 Score = 30.4 bits (67), Expect = 2.4 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 3/83 (3%) Frame = +3 Query: 3 QGDRGATRRFPQSSPPLRPAPKTTVPRFAAVSGH-GRRPRRGGALWHVLPHKKEAF*PHQ 179 +GDR R P + P RP + SGH G R GG W P++ Sbjct: 1047 EGDRQLQRTSPPARTPARPPERKAQIERHLESGHTGPRQSLGG--WQSQERLSGPQSPNR 1104 Query: 180 WPFTSW--CKDGWQLGIWQCYQG 242 P SW K+G LG W +G Sbjct: 1105 HPEKSWGSQKEGPSLGGWPELEG 1127
>RBS1_BRANA (P05346) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 181 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/69 (28%), Positives = 31/69 (44%) Frame = +1 Query: 91 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 270 P+ A VAP S + RK ++ I+ + V N G S K W V +KF Sbjct: 15 PAQATMVAPFTGLKSSSAFPVTRKANNDITSI-------VSNGGRVSCMKVWPPVGKKKF 67 Query: 271 QFINFLSTL 297 + +++L L Sbjct: 68 ETLSYLPDL 76
>POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3163 Score = 29.6 bits (65), Expect = 4.1 Identities = 18/86 (20%), Positives = 35/86 (40%) Frame = +1 Query: 160 KPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEAN 339 + +P L A M+ +WG+ +T + A + F S ++ Y+A Sbjct: 2781 RSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETALR 2840 Query: 340 MIYSSVEQTEQKKSEVLIILDSDNED 417 +Y E ++ ++ L + D ED Sbjct: 2841 KLYLDKEPAQEDLTQYLQAIFEDYED 2866
>POLG_PVMA (Q85197) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral gen Length = 3059 Score = 29.6 bits (65), Expect = 4.1 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 1/101 (0%) Frame = +1 Query: 169 DPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEANMIY 348 +PI L A MV +WG+ +T + A + + + Y+A + +Y Sbjct: 2700 EPIHRLEAICASMVESWGYPELTHEIRRFYAWVLEQSPYNALATTGLAPYIAESALKTLY 2759 Query: 349 SSVEQTEQKKSEVLIILDSD-NEDESMAAXQQLTPEKTTAL 468 ++V T + + I D +E++ M Q T + + AL Sbjct: 2760 TNVHPTSTELEKYSIQFDEQMDEEDDMVYFQAETLDASEAL 2800
>GCP60_MOUSE (Q8BMP6) Golgi resident protein GCP60 (Acyl-CoA-binding| domain-containing protein 3) (Golgi phosphoprotein 1) (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1) (PBR- and PKA-associated protein 7) (Peripherial benzodiazepine receptor-asso Length = 524 Score = 29.6 bits (65), Expect = 4.1 Identities = 14/55 (25%), Positives = 21/55 (38%) Frame = +1 Query: 64 QKPQCRASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFG 228 ++P +PP APG SG + G + +M +WGFG Sbjct: 24 ERPGAEGAPPQTPPSSAPGNGLGSGASGQQREPGEAAAEGAAEEARRMEQHWGFG 78
>RBS2_FRIAG (O22572) Ribulose bisphosphate carboxylase small chain 2,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2) Length = 179 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +1 Query: 85 SPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPG-AKMVGNWGFGSVTKDWESVNA 261 S + A VAP +A+ + K + P++ ++ G + + N G K W V Sbjct: 9 SSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGL 68 Query: 262 RKFQFINFLSTL 297 +KF+ +++L TL Sbjct: 69 KKFETLSYLPTL 80
>POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3164 Score = 29.3 bits (64), Expect = 5.4 Identities = 19/90 (21%), Positives = 36/90 (40%) Frame = +1 Query: 160 KPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEAN 339 + +P L A M+ +WG+ +T + A + F S ++ Y+A Sbjct: 2782 RSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETALR 2841 Query: 340 MIYSSVEQTEQKKSEVLIILDSDNEDESMA 429 +Y E ++ + L + D ED + A Sbjct: 2842 KLYLDKEPAQEDLTHYLQAIFEDYEDGTEA 2871
>TTLL5_HUMAN (Q6EMB2) Tubulin--tyrosine ligase-like protein 5 (SRC1 and| TIF2-associated modulatory protein) Length = 1277 Score = 29.3 bits (64), Expect = 5.4 Identities = 25/108 (23%), Positives = 42/108 (38%) Frame = +1 Query: 127 APSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKP 306 +PSG + T+ P P + S PG++ + GF WE + +T P Sbjct: 1080 SPSGPTWSTQSDPQAPENHSSSPGSRSLQTGGFA-----WEGEVENN---VYSQATGVVP 1131 Query: 307 TQSYVACAEANMIYSSVEQTEQKKSEVLIILDSDNEDESMAAXQQLTP 450 Y A + + +++Q EQ+K + +LD Q P Sbjct: 1132 QHKYHPTAGSYQLQFALQQLEQQKLQSRQLLDQSRARHQAIFGSQTLP 1179
>RBS2_BRANA (P27985) Ribulose bisphosphate carboxylase small chain F1,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit F1) Length = 181 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/69 (26%), Positives = 32/69 (46%) Frame = +1 Query: 91 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 270 P+ A VAP S + RK ++ I+ ++ G ++ S K W V +KF Sbjct: 15 PAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRV-------SCMKVWPPVGKKKF 67 Query: 271 QFINFLSTL 297 + +++L L Sbjct: 68 ETLSYLPDL 76
>MUTL_RHIME (Q92RP4) DNA mismatch repair protein mutL| Length = 605 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +2 Query: 71 HSAALRRRQRPWTSPPARRRPLACITTQKGSLLTPSVAFHFLVQ 202 H A +R Q PW++ + RPL +G P AF Q Sbjct: 348 HRAGQQRPQEPWSAAASPHRPLRFEEAARGFAEAPQAAFSDFAQ 391
>EPHB3_CHICK (Q07498) Ephrin type-B receptor 3 (EC 2.7.10.1) (Tyrosine-protein| kinase receptor CEK10) (Fragment) Length = 988 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = -3 Query: 363 LLDRAINHISFSTRHITLSGLTQSRKEIYKLELPSIHTF---PVLGNTAKSPIANHLCT 196 L R +++ F R + L+GLT+ R I K+ +TF V G ++KSP H + Sbjct: 358 LCSRCDDNVEFVPRQLGLTGLTERRIYISKVMAHPQYTFEIQAVNGISSKSPYPPHFAS 416
>RBS1_FRIAG (O24634) Ribulose bisphosphate carboxylase small chain 1/4,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1/4) Length = 179 Score = 28.9 bits (63), Expect = 7.1 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = +1 Query: 82 ASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNA 261 A+P A+M VAP S + +KP+ +S L G ++ K W V Sbjct: 17 AAPAQASM-VAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRV-------QCMKVWPIVGL 68 Query: 262 RKFQFINFLSTL 297 +KF+ +++L TL Sbjct: 69 KKFETLSYLPTL 80
>RBS2B_ARATH (P10797) Ribulose bisphosphate carboxylase small chain 2B,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) Length = 181 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/69 (24%), Positives = 32/69 (46%) Frame = +1 Query: 91 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 270 P+ A VAP S + RK ++ I+ ++ G ++ S K W + +KF Sbjct: 15 PAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRV-------SCMKVWPPIGKKKF 67 Query: 271 QFINFLSTL 297 + +++L L Sbjct: 68 ETLSYLPDL 76
>RBS1B_ARATH (P10796) Ribulose bisphosphate carboxylase small chain 1B,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) Length = 181 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/69 (24%), Positives = 32/69 (46%) Frame = +1 Query: 91 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 270 P+ A VAP S + RK ++ I+ ++ G ++ S K W + +KF Sbjct: 15 PAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRV-------SCMKVWPPIGKKKF 67 Query: 271 QFINFLSTL 297 + +++L L Sbjct: 68 ETLSYLPDL 76
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 121 EAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNW 219 E +PS MY + + SDP S PGA NW Sbjct: 1466 EPSPSSMYGNAEDSSSDPESLAEDPGAAARNNW 1498 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.310 0.125 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,283,921 Number of Sequences: 219361 Number of extensions: 1419234 Number of successful extensions: 3736 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3533 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3733 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
