ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33g05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete sequence Length = 193483 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 400 gattcggataatgaagatgaaa 421 |||||||||||||||||||||| Sbjct: 24399 gattcggataatgaagatgaaa 24420
>gb|AF520715.1| Drosophila melanogaster MICAL long isoform mRNA, complete cds Length = 14172 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 400 gattcggataatgaagatgaaa 421 |||||||||||||||||||||| Sbjct: 8224 gattcggataatgaagatgaaa 8245
>ref|NM_176449.1| Drosophila melanogaster MICAL CG33208-RH, transcript variant H (MICAL), mRNA Length = 14342 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 400 gattcggataatgaagatgaaa 421 |||||||||||||||||||||| Sbjct: 8279 gattcggataatgaagatgaaa 8300
>ref|NM_176448.1| Drosophila melanogaster MICAL CG33208-RG, transcript variant G (MICAL), mRNA Length = 14329 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 400 gattcggataatgaagatgaaa 421 |||||||||||||||||||||| Sbjct: 8266 gattcggataatgaagatgaaa 8287
>ref|NM_176447.1| Drosophila melanogaster MICAL CG33208-RF, transcript variant F (MICAL), mRNA Length = 14481 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 400 gattcggataatgaagatgaaa 421 |||||||||||||||||||||| Sbjct: 8418 gattcggataatgaagatgaaa 8439
>ref|NM_176446.1| Drosophila melanogaster MICAL CG33208-RD, transcript variant D (MICAL), mRNA Length = 14389 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 400 gattcggataatgaagatgaaa 421 |||||||||||||||||||||| Sbjct: 8326 gattcggataatgaagatgaaa 8347
>ref|NM_176445.1| Drosophila melanogaster MICAL CG33208-RC, transcript variant C (MICAL), mRNA Length = 14434 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 400 gattcggataatgaagatgaaa 421 |||||||||||||||||||||| Sbjct: 8371 gattcggataatgaagatgaaa 8392
>gb|AC009183.5|AC009183 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone BACR39F04, complete sequence Length = 192055 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 400 gattcggataatgaagatgaaa 421 |||||||||||||||||||||| Sbjct: 31999 gattcggataatgaagatgaaa 31978
>gb|AE003685.5| Drosophila melanogaster chromosome 3R, section 23 of 118 of the complete sequence Length = 241476 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 400 gattcggataatgaagatgaaa 421 |||||||||||||||||||||| Sbjct: 90614 gattcggataatgaagatgaaa 90593
>gb|AC154990.1| Homo sapiens chromosome 9 clone fa1066, complete sequence Length = 35350 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 ccccagtcctctcctcctctc 53 ||||||||||||||||||||| Sbjct: 5794 ccccagtcctctcctcctctc 5814
>ref|XM_520364.1| PREDICTED: Pan troglodytes similar to G-protein signalling modulator 1 (AGS3-like, C. elegans); activator of G-protein signaling 3; 1810037C22Rik (LOC464856), mRNA Length = 5160 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 ccccagtcctctcctcctctc 53 ||||||||||||||||||||| Sbjct: 3791 ccccagtcctctcctcctctc 3811
>ref|XM_478639.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1749 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 cctctcctcctctccgccccgctcc 64 |||| |||||||||||||||||||| Sbjct: 9 cctcgcctcctctccgccccgctcc 33
>emb|BX649589.3| Human DNA sequence from clone RP5-1175C6 on chromosome 9, complete sequence Length = 35831 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 ccccagtcctctcctcctctc 53 ||||||||||||||||||||| Sbjct: 26896 ccccagtcctctcctcctctc 26916
>emb|AL050320.19|HSJ1077I2 Human DNA sequence from clone RP5-1077I2 on chromosome 20 Contains the 3' end of the SPTLC2L gene for serine palmitoyltransferase long chain base subunit 2-like (aminotransferase 2), the 5' end of C20orf82 gene for a novel protein similar to Xenopus Isthmin protein, two novel genes and a putative CpG island, complete sequence Length = 107057 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 359 agcaaacagagcagaaaaagagcga 383 |||||||||||||| |||||||||| Sbjct: 86800 agcaaacagagcaggaaaagagcga 86824
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 cctctcctcctctccgccccgctcc 64 |||| |||||||||||||||||||| Sbjct: 21618299 cctcgcctcctctccgccccgctcc 21618275
>dbj|AK065606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034A05, full insert sequence Length = 1749 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 cctctcctcctctccgccccgctcc 64 |||| |||||||||||||||||||| Sbjct: 9 cctcgcctcctctccgccccgctcc 33
>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1612_A04 Length = 124833 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 cctctcctcctctccgccccgctcc 64 |||| |||||||||||||||||||| Sbjct: 48755 cctcgcctcctctccgccccgctcc 48731
>ref|NM_183590.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1785 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 cgtcgcccccggcgaggcggcgcc 131 ||||||| |||||||||||||||| Sbjct: 1716 cgtcgccgccggcgaggcggcgcc 1693
>gb|AC104553.7| Mus musculus chromosome 15, clone RP24-160M22, complete sequence Length = 155191 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 cctctcctcctctccgcccc 59 |||||||||||||||||||| Sbjct: 14705 cctctcctcctctccgcccc 14686
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cacagtgccgcgcttcgccg 90 |||||||||||||||||||| Sbjct: 2968272 cacagtgccgcgcttcgccg 2968253
>ref|NM_207617.1| Rattus norvegicus IQ motif and Sec7 domain 3 (Iqsec3), mRNA Length = 7410 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 acaaaaaggaagccttctga 170 |||||||||||||||||||| Sbjct: 255 acaaaaaggaagccttctga 236
>gb|AC126796.4| Mus musculus BAC clone RP23-384F19 from chromosome 10, complete sequence Length = 211025 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tttccccagtcctctcctcc 49 |||||||||||||||||||| Sbjct: 32870 tttccccagtcctctcctcc 32851
>gb|AC125204.4| Mus musculus BAC clone RP23-237H8 from 10, complete sequence Length = 198473 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 tttccccagtcctctcctcc 49 |||||||||||||||||||| Sbjct: 18536 tttccccagtcctctcctcc 18555
>emb|AL929554.20| Human DNA sequence from clone RP11-350O14 on chromosome 9 Contains the 3' end of the MAN1B1 gene for mannosidase alpha class 1B member 1, the DPP7 gene for dipeptidylpeptidase 7, the GRIN1 gene for glutamate receptor ionotropic N-methyl D-aspartate 1, a novel gene, the gene for anaphase-promoting complex subunit 2 (ANAPC2), the SSNA1 gene for Sjogren's syndrome nuclear autoantigen 1, three novel genes (FLJ90254), a novel pseudogene, the 5' end of the gene for NADPH-dependent FMN and FAD containing oxidoreductase (NR1) and thirteen CpG islands, complete sequence Length = 119883 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 ggcagtgttaccaaggactg 245 |||||||||||||||||||| Sbjct: 56488 ggcagtgttaccaaggactg 56469
>emb|AL353741.16| Human DNA sequence from clone RP11-575C20 on chromosome 9 Contains a general transcription factor IIIA (GTF3A) pseudogene, a novel gene (DVS27) and a CpG island, complete sequence Length = 199517 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 aatgaagatgaaagcatggc 428 |||||||||||||||||||| Sbjct: 141178 aatgaagatgaaagcatggc 141159
>emb|AL606521.24| Mouse DNA sequence from clone RP23-280J3 on chromosome 11 Contains the 5' end of the Mtmr3 gene for myotubularin related protein 3, two novel genes, the gene for a novel protein similar to human ASC-1 complex subunit P100, the gene for a novel protein similar to human ubiquinol-cytochrome C reductase complex 7.2 kDa protein UQCR10, the Cabp7 gene for calcium binding protein 7, the 3' end of the Nf2 gene for neurofibromatosis 2 and two CpG islands, complete sequence Length = 233997 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ccccagtcctctcctcctct 52 |||||||||||||||||||| Sbjct: 193029 ccccagtcctctcctcctct 193048
>gb|AC090739.13| Homo sapiens chromosome 8, clone RP11-503E24, complete sequence Length = 189048 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 acttcctggtgcaaagatgg 208 |||||||||||||||||||| Sbjct: 43294 acttcctggtgcaaagatgg 43313
>gb|AC023706.4| Drosophila melanogaster X BAC RP98-4D11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172854 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gttggcaattggggatttgg 227 |||||||||||||||||||| Sbjct: 106735 gttggcaattggggatttgg 106716
>gb|AC106789.2| Homo sapiens chromosome 5 clone RP11-371M22, complete sequence Length = 115165 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 gaagatgaaagcatggcagc 431 |||||||||||||||||||| Sbjct: 50155 gaagatgaaagcatggcagc 50136
>tpg|BK005012.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 9 (WRKY9) gene, complete cds Length = 8241 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 cgtcgcccccggcgaggcggcgcc 131 ||||||| |||||||||||||||| Sbjct: 8172 cgtcgccgccggcgaggcggcgcc 8149
>gb|AC007550.70| Mus musculus strain 129S6/SvEvTac chromosome 11a2 clone rp21-434h10, complete sequence Length = 199956 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ccccagtcctctcctcctct 52 |||||||||||||||||||| Sbjct: 106698 ccccagtcctctcctcctct 106679
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cccccggcgaggcggcgccc 132 |||||||||||||||||||| Sbjct: 2171980 cccccggcgaggcggcgccc 2171999
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 cgtcgcccccggcgaggcggcgcc 131 ||||||| |||||||||||||||| Sbjct: 10476807 cgtcgccgccggcgaggcggcgcc 10476784
>dbj|AB057643.1| Rattus norvegicus sag mRNA for synArfGEF, complete cds Length = 7410 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 acaaaaaggaagccttctga 170 |||||||||||||||||||| Sbjct: 255 acaaaaaggaagccttctga 236
>gb|AY211023.1| Streptomyces violaceoruber strain SANK95570 plasmid pSV2, complete sequence Length = 96742 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 cgcccccggcgaggcggcgc 130 |||||||||||||||||||| Sbjct: 24714 cgcccccggcgaggcggcgc 24733
>dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0469E05 Length = 160769 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 cgtcgcccccggcgaggcggcgcc 131 ||||||| |||||||||||||||| Sbjct: 121767 cgtcgccgccggcgaggcggcgcc 121744
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 ttcgccgccgtcagcggcca 103 |||||||||||||||||||| Sbjct: 295944 ttcgccgccgtcagcggcca 295925
>gb|AE003439.3| Drosophila melanogaster chromosome X, section 23 of 74 of the complete sequence Length = 331952 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gttggcaattggggatttgg 227 |||||||||||||||||||| Sbjct: 78707 gttggcaattggggatttgg 78688
>emb|AL845167.7| Mouse DNA sequence from clone RP23-36P16 on chromosome X, complete sequence Length = 162237 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 437 aacaacttacgcctgagaaaacaa 460 ||||||||| |||||||||||||| Sbjct: 35092 aacaacttaagcctgagaaaacaa 35115
>emb|AL132992.4|CNS01DTZ Human chromosome 14 DNA sequence BAC C-2268P10 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 133186 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 cctctcctcctctccgccccgctc 63 ||||||||||||||| |||||||| Sbjct: 14101 cctctcctcctctcctccccgctc 14078
>emb|AL118555.6|CNS01DRS Human chromosome 14 DNA sequence BAC C-2011M8 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 122552 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 cctctcctcctctccgccccgctc 63 ||||||||||||||| |||||||| Sbjct: 34627 cctctcctcctctcctccccgctc 34650
>emb|Z32772.1|HSNMDAR1A H.sapiens gene for N-methyl-D-aspartate receptor R1, exon1, exon2 Length = 7282 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 ggcagtgttaccaaggactg 245 |||||||||||||||||||| Sbjct: 5594 ggcagtgttaccaaggactg 5575 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,668,689 Number of Sequences: 3902068 Number of extensions: 4668689 Number of successful extensions: 112375 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112134 Number of HSP's gapped (non-prelim): 241 length of query: 473 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 451 effective length of database: 17,147,199,772 effective search space: 7733387097172 effective search space used: 7733387097172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
