ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY391261.1| Uncultured dinoflagellate BSL-2003 heat shock pro... 46 0.089
2gb|AY391255.1| Heterocapsa triquetra heat shock protein 90 gene,... 46 0.089
3gb|AY729855.1| Heterocapsa triquetra heat shock protein 90 gene,... 46 0.089
4ref|XM_505226.1| Yarrowia lipolytica CLIB122, YALI0F09878g predi... 44 0.35
5emb|AJ634631.1| Yarrowia lipolytica AIP1 gene for ANL1P interact... 44 0.35
6emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 44 0.35
7gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retro... 42 1.4
8gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume ... 42 1.4
9ref|XM_785534.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.4
10gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 5.5
11emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 40 5.5
12gb|AF421541.1| Crypthecodinium cohnii Hsp90 mRNA, complete cds 40 5.5
13gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 5.5
14gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.5
15emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.5
16gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.5

>gb|AY391261.1| Uncultured dinoflagellate BSL-2003 heat shock protein 90 gene,
            partial cds
          Length = 1547

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 47   ttcttctcgtcctcgtcctcgat 69
            |||||||||||||||||||||||
Sbjct: 1526 ttcttctcgtcctcgtcctcgat 1504



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>gb|AY391255.1| Heterocapsa triquetra heat shock protein 90 gene, partial cds
          Length = 1671

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 47   ttcttctcgtcctcgtcctcgat 69
            |||||||||||||||||||||||
Sbjct: 1526 ttcttctcgtcctcgtcctcgat 1504



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>gb|AY729855.1| Heterocapsa triquetra heat shock protein 90 gene, partial cds
          Length = 1734

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 47   ttcttctcgtcctcgtcctcgat 69
            |||||||||||||||||||||||
Sbjct: 1562 ttcttctcgtcctcgtcctcgat 1540



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>ref|XM_505226.1| Yarrowia lipolytica CLIB122, YALI0F09878g predicted mRNA
          Length = 1083

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 45  tattcttctcgtcctcgtcctcgatctcga 74
           |||||| |||||| ||||||||||||||||
Sbjct: 343 tattctcctcgtcatcgtcctcgatctcga 314



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>emb|AJ634631.1| Yarrowia lipolytica AIP1 gene for ANL1P interacting protein
          Length = 1978

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 45   tattcttctcgtcctcgtcctcgatctcga 74
            |||||| |||||| ||||||||||||||||
Sbjct: 1038 tattctcctcgtcatcgtcctcgatctcga 1009



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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 45      tattcttctcgtcctcgtcctcgatctcga 74
               |||||| |||||| ||||||||||||||||
Sbjct: 1345473 tattctcctcgtcatcgtcctcgatctcga 1345444



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>gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1,
            xilon1 retrotransposon, helitron B73_14578, gypsy
            retrotransposon huck1 and ruda retrotransposon, complete
            sequence
          Length = 152384

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 118  gcctcgggctcgggagcgtcg 138
            |||||||||||||||||||||
Sbjct: 1716 gcctcgggctcgggagcgtcg 1736



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>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1)
              gene, complete cds
          Length = 169976

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 118    gcctcgggctcgggagcgtcg 138
              |||||||||||||||||||||
Sbjct: 136508 gcctcgggctcgggagcgtcg 136488



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>ref|XM_785534.1| PREDICTED: Strongylocentrotus purpuratus similar to P2X
           purinoceptor 7 (ATP receptor) (P2X7) (Purinergic
           receptor) (P2Z receptor) (LOC585718), mRNA
          Length = 1106

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 52  ctcgtcctcgtcctcgatctc 72
           |||||||||||||||||||||
Sbjct: 264 ctcgtcctcgtcctcgatctc 244



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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ctcgtcctcgtcctcgatct 71
             ||||||||||||||||||||
Sbjct: 98458 ctcgtcctcgtcctcgatct 98477



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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    ggtcgccgcctcctccttgt 179
              ||||||||||||||||||||
Sbjct: 190922 ggtcgccgcctcctccttgt 190903



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>gb|AF421541.1| Crypthecodinium cohnii Hsp90 mRNA, complete cds
          Length = 2540

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   ttcttctcgtcctcgtcctc 66
            ||||||||||||||||||||
Sbjct: 1675 ttcttctcgtcctcgtcctc 1656



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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 54      cgtcctcgtcctcgatctcg 73
               ||||||||||||||||||||
Sbjct: 2614040 cgtcctcgtcctcgatctcg 2614059



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 149     gacctcgcccaggtcgccgc 168
               ||||||||||||||||||||
Sbjct: 1430013 gacctcgcccaggtcgccgc 1430032



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 150     acctcgcccaggtcgccgcc 169
               ||||||||||||||||||||
Sbjct: 3380762 acctcgcccaggtcgccgcc 3380743



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      cgtcctcgtcctcgatctcg 73
               ||||||||||||||||||||
Sbjct: 2246806 cgtcctcgtcctcgatctcg 2246787


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,282,826
Number of Sequences: 3902068
Number of extensions: 2282826
Number of successful extensions: 105000
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104678
Number of HSP's gapped (non-prelim): 322
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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