Clone Name | bastl33f12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3111 Score = 119 bits (60), Expect = 4e-24 Identities = 78/84 (92%) Strand = Plus / Plus Query: 149 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 208 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 246 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 305 Query: 209 cgccatggcgaatgagatcaaggc 232 ||||||||| |||||||||||| Sbjct: 306 cgccatggccggtgagatcaaggc 329
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 119 bits (60), Expect = 4e-24 Identities = 78/84 (92%) Strand = Plus / Minus Query: 149 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 208 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 10025978 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 10025919 Query: 209 cgccatggcgaatgagatcaaggc 232 ||||||||| |||||||||||| Sbjct: 10025918 cgccatggccggtgagatcaaggc 10025895
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 119 bits (60), Expect = 4e-24 Identities = 78/84 (92%) Strand = Plus / Minus Query: 149 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 208 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 106260 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 106201 Query: 209 cgccatggcgaatgagatcaaggc 232 ||||||||| |||||||||||| Sbjct: 106200 cgccatggccggtgagatcaaggc 106177
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 119 bits (60), Expect = 4e-24 Identities = 78/84 (92%) Strand = Plus / Minus Query: 149 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 208 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 120471 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 120412 Query: 209 cgccatggcgaatgagatcaaggc 232 ||||||||| |||||||||||| Sbjct: 120411 cgccatggccggtgagatcaaggc 120388
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 75.8 bits (38), Expect = 5e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 21373 Query: 219 aatgagatcaaggc 232 || ||||||||||| Sbjct: 21372 aacgagatcaaggc 21359
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 75.8 bits (38), Expect = 5e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170838 Query: 219 aatgagatcaaggc 232 || ||||||||||| Sbjct: 170837 aacgagatcaaggc 170824
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 75.8 bits (38), Expect = 5e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3653701 Query: 219 aatgagatcaaggc 232 || ||||||||||| Sbjct: 3653700 aacgagatcaaggc 3653687
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full insert sequence Length = 3332 Score = 75.8 bits (38), Expect = 5e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170 Query: 219 aatgagatcaaggc 232 || ||||||||||| Sbjct: 171 aacgagatcaaggc 184
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full insert sequence Length = 3332 Score = 75.8 bits (38), Expect = 5e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170 Query: 219 aatgagatcaaggc 232 || ||||||||||| Sbjct: 171 aacgagatcaaggc 184
>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full insert sequence Length = 1667 Score = 75.8 bits (38), Expect = 5e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 75 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 134 Query: 219 aatgagatcaaggc 232 || ||||||||||| Sbjct: 135 aacgagatcaaggc 148
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full insert sequence Length = 3363 Score = 75.8 bits (38), Expect = 5e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 201 Query: 219 aatgagatcaaggc 232 || ||||||||||| Sbjct: 202 aacgagatcaaggc 215
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 75.8 bits (38), Expect = 5e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3662395 Query: 219 aatgagatcaaggc 232 || ||||||||||| Sbjct: 3662394 aacgagatcaaggc 3662381
>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 193 tcgacaagggctccgccgccat 214 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 193 tcgacaagggctccgccgccat 214 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>emb|X80052.1|NCFOX2 N.crassa fox-2 gene Length = 3401 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 193 tcgacaagggctccgccgccat 214 |||||||||||||||||||||| Sbjct: 2665 tcgacaagggctccgccgccat 2686
>ref|XM_739478.1| Plasmodium chabaudi chabaudi tryptophanyl-tRNA synthetase, (PC001076.02.0) partial mRNA Length = 1623 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tacaactatttttcagttgg 22 |||||||||||||||||||| Sbjct: 163 tacaactatttttcagttgg 144
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cgccgtcgccctccggcgcg 139 |||||||||||||||||||| Sbjct: 612231 cgccgtcgccctccggcgcg 612250 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,230,752 Number of Sequences: 3902068 Number of extensions: 1230752 Number of successful extensions: 21538 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21440 Number of HSP's gapped (non-prelim): 98 length of query: 232 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 210 effective length of database: 17,147,199,772 effective search space: 3600911952120 effective search space used: 3600911952120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)