ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 119 4e-24
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 119 4e-24
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 119 4e-24
4dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 119 4e-24
5gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 76 5e-11
6gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 76 5e-11
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 76 5e-11
8dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 5e-11
9dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 5e-11
10dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 5e-11
11dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 5e-11
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 76 5e-11
13ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.19
14ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.19
15emb|X80052.1|NCFOX2 N.crassa fox-2 gene 44 0.19
16ref|XM_739478.1| Plasmodium chabaudi chabaudi tryptophanyl-tRNA ... 40 3.0
17gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 3.0

>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  119 bits (60), Expect = 4e-24
 Identities = 78/84 (92%)
 Strand = Plus / Plus

                                                                       
Query: 149 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 208
           |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 246 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 305

                                   
Query: 209 cgccatggcgaatgagatcaaggc 232
           |||||||||   ||||||||||||
Sbjct: 306 cgccatggccggtgagatcaaggc 329



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  119 bits (60), Expect = 4e-24
 Identities = 78/84 (92%)
 Strand = Plus / Minus

                                                                            
Query: 149      cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 208
                |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 10025978 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 10025919

                                        
Query: 209      cgccatggcgaatgagatcaaggc 232
                |||||||||   ||||||||||||
Sbjct: 10025918 cgccatggccggtgagatcaaggc 10025895



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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  119 bits (60), Expect = 4e-24
 Identities = 78/84 (92%)
 Strand = Plus / Minus

                                                                          
Query: 149    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 208
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 106260 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 106201

                                      
Query: 209    cgccatggcgaatgagatcaaggc 232
              |||||||||   ||||||||||||
Sbjct: 106200 cgccatggccggtgagatcaaggc 106177



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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  119 bits (60), Expect = 4e-24
 Identities = 78/84 (92%)
 Strand = Plus / Minus

                                                                          
Query: 149    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 208
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 120471 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 120412

                                      
Query: 209    cgccatggcgaatgagatcaaggc 232
              |||||||||   ||||||||||||
Sbjct: 120411 cgccatggccggtgagatcaaggc 120388



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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                         
Query: 159   gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218
             |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 21373

                           
Query: 219   aatgagatcaaggc 232
             || |||||||||||
Sbjct: 21372 aacgagatcaaggc 21359



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>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                          
Query: 159    gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218
              |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170838

                            
Query: 219    aatgagatcaaggc 232
              || |||||||||||
Sbjct: 170837 aacgagatcaaggc 170824



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                           
Query: 159     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3653701

                             
Query: 219     aatgagatcaaggc 232
               || |||||||||||
Sbjct: 3653700 aacgagatcaaggc 3653687



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>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
           insert sequence
          Length = 3332

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                       
Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                         
Query: 219 aatgagatcaaggc 232
           || |||||||||||
Sbjct: 171 aacgagatcaaggc 184



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>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
           insert sequence
          Length = 3332

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                       
Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                         
Query: 219 aatgagatcaaggc 232
           || |||||||||||
Sbjct: 171 aacgagatcaaggc 184



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>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full
           insert sequence
          Length = 1667

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                       
Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 75  gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 134

                         
Query: 219 aatgagatcaaggc 232
           || |||||||||||
Sbjct: 135 aacgagatcaaggc 148



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>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
           insert sequence
          Length = 3363

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                       
Query: 159 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 201

                         
Query: 219 aatgagatcaaggc 232
           || |||||||||||
Sbjct: 202 aacgagatcaaggc 215



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                           
Query: 159     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 218
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3662395

                             
Query: 219     aatgagatcaaggc 232
               || |||||||||||
Sbjct: 3662394 aacgagatcaaggc 3662381



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>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 193  tcgacaagggctccgccgccat 214
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183



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>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 193  tcgacaagggctccgccgccat 214
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183



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>emb|X80052.1|NCFOX2 N.crassa fox-2 gene
          Length = 3401

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 193  tcgacaagggctccgccgccat 214
            ||||||||||||||||||||||
Sbjct: 2665 tcgacaagggctccgccgccat 2686



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>ref|XM_739478.1| Plasmodium chabaudi chabaudi tryptophanyl-tRNA synthetase,
           (PC001076.02.0) partial mRNA
          Length = 1623

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   tacaactatttttcagttgg 22
           ||||||||||||||||||||
Sbjct: 163 tacaactatttttcagttgg 144



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    cgccgtcgccctccggcgcg 139
              ||||||||||||||||||||
Sbjct: 612231 cgccgtcgccctccggcgcg 612250


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,230,752
Number of Sequences: 3902068
Number of extensions: 1230752
Number of successful extensions: 21538
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21440
Number of HSP's gapped (non-prelim): 98
length of query: 232
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 210
effective length of database: 17,147,199,772
effective search space: 3600911952120
effective search space used: 3600911952120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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