>NU107_RAT (P52590) Nuclear pore complex protein Nup107 (Nucleoporin Nup107)|
           (107 kDa nucleoporin) (p105)
          Length = 926

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +3

Query: 237 STTTMTMMIPHYPSRGRQPAGQPPRSRKAHRQISLMLGALKLRPRITRGMGLMALL 404
           +TT  + +IP  PS  RQP   P RS   H  IS + G     PR  +  G +  L
Sbjct: 44  TTTPRSQIIPRTPSSFRQPFTPPSRSLLRHPDISYIFGTEGRSPRHIQSSGYLGNL 99

>CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase A) (Class-II chitin
           synthase A)
          Length = 1013

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 281 RSSTSRPA-PSKQEGASANITYVRSPKAAASNHQRNGINGASRSPLP 418
           R + SRPA P++    +    +VR P AAAS ++R  ING+ R   P
Sbjct: 62  RYTASRPASPARPWSPTRAADWVRPPSAAASYYERADINGSPRPGTP 108

>NU107_HUMAN (P57740) Nuclear pore complex protein Nup107 (Nucleoporin Nup107)|
           (107 kDa nucleoporin)
          Length = 925

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +3

Query: 237 STTTMTMMIPHYPSRGRQPAGQPPRSRKAHRQISLMLGALKLRPRITRGMGLMALL 404
           +TT    +IP  PS  RQP     RS      IS +LG     PR+T+  G    L
Sbjct: 44  NTTPRNQVIPRTPSSFRQPFTPTSRSLLRQPDISCILGTGGKSPRLTQSSGFFGNL 99

>YGY5_YEAST (P53071) Hypothetical 19.3 kDa protein in HAP2-ADE5,6 intergenic|
           region
          Length = 178

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
 Frame = +3

Query: 177 VYSIGHPATAGKQCLLSILHSTTTMTMMIPHYPSRG-----RQPAGQPP-RSRKAHRQIS 338
           ++++G P TAG   L SIL+ T   ++ +P  PSR      R P   PP      H  IS
Sbjct: 45  IWALG-PHTAGPLLLFSILNCTPARSVTLPISPSRASISFTRMPLPTPPIEGLHEHLPIS 103

Query: 339 LMLGALKL 362
           +  G +++
Sbjct: 104 VNDGVMRV 111

>ANGP1_MOUSE (O08538) Angiopoietin-1 precursor (ANG-1)|
          Length = 498

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 379 LVIRGRSFR---APNISDICRCAFLLRGGW 299
           L++ G  F    A N + +C+CA +L GGW
Sbjct: 418 LILHGADFSTKDADNDNCMCKCALMLTGGW 447

>ANGP1_HUMAN (Q15389) Angiopoietin-1 precursor (ANG-1)|
          Length = 498

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 379 LVIRGRSFR---APNISDICRCAFLLRGGW 299
           L++ G  F    A N + +C+CA +L GGW
Sbjct: 418 LILHGADFSTKDADNDNCMCKCALMLTGGW 447

>ANGP1_BOVIN (O18920) Angiopoietin-1 precursor (ANG-1) (Fragment)|
          Length = 481

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 379 LVIRGRSFR---APNISDICRCAFLLRGGW 299
           L++ G  F    A N + +C+CA +L GGW
Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446

>ANGP1_RAT (O35460) Angiopoietin-1 precursor (ANG-1)|
          Length = 497

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 379 LVIRGRSFR---APNISDICRCAFLLRGGW 299
           L++ G  F    A N + +C+CA +L GGW
Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446

>ANGP1_CANFA (Q60FC1) Angiopoietin-1 precursor (ANG-1)|
          Length = 497

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 379 LVIRGRSFR---APNISDICRCAFLLRGGW 299
           L++ G  F    A N + +C+CA +L GGW
Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446

>JIP3_HUMAN (Q9UPT6) C-jun-amino-terminal kinase-interacting protein 3|
           (JNK-interacting protein 3) (JIP-3) (JNK MAP kinase
           scaffold protein 3) (Mitogen-activated protein kinase
           8-interacting protein 3)
          Length = 1334

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 284 SSTSRPAPSKQEGASANITYVRSPKAAASNHQRN 385
           SS+S P P+K+   S NI Y +SP  A  + +RN
Sbjct: 579 SSSSSPPPAKRPYPSVNIHY-KSPTTAGFSQRRN 611

>JIP3_MOUSE (Q9ESN9) C-jun-amino-terminal kinase-interacting protein 3|
           (JNK-interacting protein 3) (JIP-3) (JNK MAP kinase
           scaffold protein 3) (Mitogen-activated protein kinase
           8-interacting protein 3) (JNK/SAPK-associated protein 1)
           (JSAP1) (Sunday drive
          Length = 1337

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 284 SSTSRPAPSKQEGASANITYVRSPKAAASNHQRN 385
           SS+S P P+K+   S NI Y +SP AA  + +R+
Sbjct: 582 SSSSSPPPAKRSYPSVNIHY-KSPTAAGFSQRRS 614


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,315,036
Number of Sequences: 219361
Number of extensions: 809050
Number of successful extensions: 2083
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2082
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)