>UL51_PRVKA (Q85227) Protein UL51|
          Length = 236

 Score = 25.8 bits (55), Expect(2) = 0.44
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 12  PLLSLPPIRSQIRRPAFPEPPADLGLDPAG 101
           P+ + P  R+   RPA P PP + G D  G
Sbjct: 173 PVPAQPAPRATAARPAPPPPPEEAGEDEEG 202



 Score = 25.0 bits (53), Expect(2) = 0.44
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 83  GTRPRRIAAPTRDSRDPIPPHPAAKLAPQRRSQRLA 190
           G RP   AAP       +PP   AK  P  +++RLA
Sbjct: 202 GDRPEDDAAPL------LPPRAPAKTRPPEKARRLA 231

>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 995

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +3

Query: 3   PASPLLSLPPIRSQIRRPAFPEPPADLGLDPAGSPXXXXXXXXXXXXTQPPSWRRSGGRS 182
           PA+P L+ PP+R++ RR  + E PA     PA  P             + PS  R G  S
Sbjct: 739 PAAPALTAPPVRTRRRRKLY-ELPAAGAPPPAAGP--APVPVVPSPTAELPSSPRPGSAS 795

Query: 183 ASP 191
           A P
Sbjct: 796 AGP 798

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 25.8 bits (55), Expect(2) = 1.5
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 3   PASPLLSLPPIRSQIRRPAF-PEPPADLGLDP 95
           P SP+ S PP + Q   P F P PP  + L P
Sbjct: 483 PPSPIYSPPPPQVQPLPPTFSPPPPRRIHLPP 514



 Score = 23.1 bits (48), Expect(2) = 1.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 92  PRRIAAPTRDSRDPIPPHP 148
           PRRI  P    R P PP P
Sbjct: 507 PRRIHLPPPPHRQPRPPTP 525

>ELF4_HUMAN (Q99607) ETS-related transcription factor Elf-4 (E74-like factor 4)|
           (Myeloid Elf-1-like factor)
          Length = 663

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
 Frame = +3

Query: 3   PASPLL--SLPPIRSQIRRPAFPEPPADLGLDPAGSPXXXXXXXXXXXXTQPP-----SW 161
           P +PL+   LP + +   RP  P PP   G  PAG              +QPP     ++
Sbjct: 477 PGAPLILSGLPQLLAGANRPTNPAPPTVTGAGPAGP------------SSQPPGTVIAAF 524

Query: 162 RRSGGRSASP 191
            R+ G +A+P
Sbjct: 525 IRTSGTTAAP 534

>PEP_DROME (P41073) Zinc finger protein on ecdysone puffs|
          Length = 716

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = -1

Query: 159 NLAAGCGGIGSRESRVGAAIRRG-----RVPDLRGAQEMRGGGFESELGGERGEG 10
           +L  G GG+G+R  R G  + RG     R+ + RG    +GGGF++   G  G G
Sbjct: 107 DLPRGGGGMGNRNQRGGPMVSRGGGAGNRLNNRRG----QGGGFQNR--GATGSG 155

>SO2B1_RAT (Q9JHI3) Solute carrier organic anion transporter family member 2B1|
           (Solute carrier family 21 member 9) (Organic anion
           transporter moatp1)
          Length = 682

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 40  LKSAAPHFLSPPQIWDSTPPDRRAD--AGLARSDPAAPS 150
           L  A PHF+S P  +D + PDR  D  A L      AP+
Sbjct: 122 LLMALPHFISEPYRYDHSSPDRSQDFEASLCLPTTMAPA 160

>X_WHV1 (P03167) Trans-activating protein X|
          Length = 141

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 3   PASPLLSLPPIRSQIRRPAFPEPPADLGLDPAGS 104
           PA  +L L P  SQ   P FP P A     PA S
Sbjct: 11  PARDVLLLRPFGSQSSGPPFPRPSAGSAASPASS 44

>PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46|
          Length = 778

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -1

Query: 165 GANLAAGCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEG 10
           GA  A G GGIG  +   G     G   D  GA     GG +  +GG  G+G
Sbjct: 453 GAGGAGGAGGIGETDGSAGGVATGGEGGD--GAT----GGVDGGVGGAGGKG 498

>PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46|
          Length = 778

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -1

Query: 165 GANLAAGCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEG 10
           GA  A G GGIG  +   G     G   D  GA     GG +  +GG  G+G
Sbjct: 453 GAGGAGGAGGIGETDGSAGGVATGGEGGD--GAT----GGVDGGVGGAGGKG 498

>REPB_ECOLI (Q57154) RepFIB replication protein A|
          Length = 325

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 89  RPRRIAAPTRDSRD-PIPPHPAAKLAPQ 169
           R  R+ AP  +S++ P+PP PA K++P+
Sbjct: 273 RRPRLKAPNDESKENPLPPSPAEKVSPE 300

>REP11_ECOLI (Q52347) RepFIB replication protein A|
          Length = 325

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 89  RPRRIAAPTRDSRD-PIPPHPAAKLAPQ 169
           R  R+ AP  +S++ P+PP PA K++P+
Sbjct: 273 RRPRLKAPNDESKENPLPPSPAEKVSPE 300

>REP10_ECOLI (Q52219) RepFIB replication protein A|
          Length = 325

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 89  RPRRIAAPTRDSRD-PIPPHPAAKLAPQ 169
           R  R+ AP  +S++ P+PP PA K++P+
Sbjct: 273 RRPRLKAPNDESKENPLPPSPAEKVSPE 300

>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 12  PLLSLPPIRSQIRRPAFPEPPADLGLDP 95
           P+L LPP+ S    P  P P A  G+ P
Sbjct: 578 PILPLPPLSSATPPPGIPPPGAPQGMPP 605

>VCAP_EHV1V (Q6S6S9) Major capsid protein (MCP) (Capsid protein VP5)|
          Length = 1376

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 64  LSPPQIWDSTPPDRRADAGLARS 132
           L PP IWD  P   RAD G AR+
Sbjct: 731 LLPPLIWDCDPILHRADMGRARA 753

>VCAP_EHV1B (P28920) Major capsid protein (MCP) (Capsid protein VP5)|
          Length = 1376

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 64  LSPPQIWDSTPPDRRADAGLARS 132
           L PP IWD  P   RAD G AR+
Sbjct: 731 LLPPLIWDCDPILHRADMGRARA 753

>IF2_NITWN (Q3SWP9) Translation initiation factor IF-2|
          Length = 871

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 92  PRRIAAPTRDSRDPIPPHPAAKLAPQRRSQRL 187
           PR +  P   +R  I P PAAK AP ++  RL
Sbjct: 215 PRLVRRPGGPARPVIAPKPAAKPAPAKQRGRL 246

>HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3
          Length = 774

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 3   PASPLLSLPPIRSQIRRPAFPEPPADLGL 89
           P S LL+ PP  +Q  RP  PEP    GL
Sbjct: 740 PPSGLLAKPPRTAQPPRPPVPEPATPRGL 768

>PTF1A_RAT (Q64305) Pancreas transcription factor 1 subunit alpha|
           (Pancreas-specific transcription factor 1a) (bHLH
           transcription factor p48) (p48 DNA-binding subunit of
           transcription factor PTF1) (PTF1-p48)
          Length = 326

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 46  SAAPHFLSPPQIWDSTPPDRRADAGLARSDPAAP 147
           SAAPH L+PP + D   P+   D+G    D  AP
Sbjct: 75  SAAPHALAPPPLGDPGEPE---DSGSYCCDAGAP 105

>SP110_HUMAN (Q9HB58) Sp110 nuclear body protein (Speckled 110 kDa)|
           (Transcriptional coactivator Sp110) (Interferon-induced
           protein 41/75)
          Length = 689

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 3   PASPLLSLPPIRSQIRRPAFPEPPADLGLDPA 98
           P SPL S+P IR     P  PE P ++   P+
Sbjct: 242 PHSPLGSMPEIRDNSPEPNDPEEPQEVSSTPS 273

>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 12   PLLSLPPIRSQIRRPAFPEPPADLGLDPAGSP 107
            P +SLP    Q + PA P PP   G +P   P
Sbjct: 2951 PRVSLPVRSRQQQSPAIPLPPMHSGSEPGARP 2982

>FBRL_HUMAN (P22087) Fibrillarin (34 kDa nucleolar scleroderma antigen)|
          Length = 321

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 19/46 (41%), Positives = 19/46 (41%)
 Frame = -1

Query: 147 GCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEG 10
           G G  G R  R G    RGR    RG     GGG     GG RG G
Sbjct: 17  GFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGG 62

>ACN1_ACAGO (Q8I948) Acanthoscurrin-1 precursor|
          Length = 156

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 147 GCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEGK 7
           G GG+G  +   G  +  G +   RG     GGG+    GG  G GK
Sbjct: 107 GGGGLGGGKGLGGGGLGGGGLGGGRGGGYGGGGGYGGGYGGGYGGGK 153

>PTH_CAUCR (Q9AAV9) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 205

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -1

Query: 153 AAGCGGIGSRESRVGAAIRRGRV 85
           AAG  GI S  S+VG A RRGR+
Sbjct: 112 AAGNNGIRSVTSQVGDAFRRGRI 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.128    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,625,151
Number of Sequences: 219361
Number of extensions: 403962
Number of successful extensions: 2452
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2443
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)