ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33f06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 252 bits (127), Expect = 9e-64 Identities = 187/207 (90%) Strand = Plus / Plus Query: 141 atgggtttcgataatgaatgtattctgaatatacaaactcttcctggtgaatatttttgc 200 ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| || Sbjct: 2720860 atgggtttcgataatgagtgtgttctgaatattcaaactcttcctggtgaatatttctgt 2720919 Query: 201 cctgtttgtcggacactcatataccccaacgaagctctgcaagctcagtgcacacatctc 260 |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| Sbjct: 2720920 cctgtttgtcggacgctcatatgtcccaacgaagctctgcaaactcagtgcacacatctc 2720979 Query: 261 tactgcaaaccttgcttggcttatgtagcagcaaccacacaagcctgcccttatgatggt 320 ||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||| Sbjct: 2720980 tactgcaaaccctgcttggcttacatagtggcaacaacacaagcctgcccttatgatggc 2721039 Query: 321 tacttagtgacggaagctgattccaag 347 || || || || ||||||||||||||| Sbjct: 2721040 tatttggttacagaagctgattccaag 2721066 Score = 87.7 bits (44), Expect = 3e-14 Identities = 103/120 (85%), Gaps = 2/120 (1%) Strand = Plus / Plus Query: 346 agcctctggtgggttcaaataaatcacttgctgagacaattggtaaagttacagtacaat 405 |||||||| ||| ||||||||| | ||||||||||||||||||||||||||||| || | Sbjct: 2721167 agcctctgatggaatcaaataaaccccttgctgagacaattggtaaagttacagtccact 2721226 Query: 406 gcctgtacaacaagagtggttgccaatggcaagg-aacctgtctgaatgca-cacacatg 463 | | ||| ||||||||||||| |||||||| || || |||||||| |||| |||||||| Sbjct: 2721227 gtcagtatcacaagagtggttgtcaatggcatggtaatctgtctgactgcatcacacatg 2721286
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 252 bits (127), Expect = 9e-64 Identities = 187/207 (90%) Strand = Plus / Plus Query: 141 atgggtttcgataatgaatgtattctgaatatacaaactcttcctggtgaatatttttgc 200 ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| || Sbjct: 2720804 atgggtttcgataatgagtgtgttctgaatattcaaactcttcctggtgaatatttctgt 2720863 Query: 201 cctgtttgtcggacactcatataccccaacgaagctctgcaagctcagtgcacacatctc 260 |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| Sbjct: 2720864 cctgtttgtcggacgctcatatgtcccaacgaagctctgcaaactcagtgcacacatctc 2720923 Query: 261 tactgcaaaccttgcttggcttatgtagcagcaaccacacaagcctgcccttatgatggt 320 ||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||| Sbjct: 2720924 tactgcaaaccctgcttggcttacatagtggcaacaacacaagcctgcccttatgatggc 2720983 Query: 321 tacttagtgacggaagctgattccaag 347 || || || || ||||||||||||||| Sbjct: 2720984 tatttggttacagaagctgattccaag 2721010 Score = 87.7 bits (44), Expect = 3e-14 Identities = 103/120 (85%), Gaps = 2/120 (1%) Strand = Plus / Plus Query: 346 agcctctggtgggttcaaataaatcacttgctgagacaattggtaaagttacagtacaat 405 |||||||| ||| ||||||||| | ||||||||||||||||||||||||||||| || | Sbjct: 2721111 agcctctgatggaatcaaataaaccccttgctgagacaattggtaaagttacagtccact 2721170 Query: 406 gcctgtacaacaagagtggttgccaatggcaagg-aacctgtctgaatgca-cacacatg 463 | | ||| ||||||||||||| |||||||| || || |||||||| |||| |||||||| Sbjct: 2721171 gtcagtatcacaagagtggttgtcaatggcatggtaatctgtctgactgcatcacacatg 2721230
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 252 bits (127), Expect = 9e-64 Identities = 187/207 (90%) Strand = Plus / Plus Query: 141 atgggtttcgataatgaatgtattctgaatatacaaactcttcctggtgaatatttttgc 200 ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| || Sbjct: 89786 atgggtttcgataatgagtgtgttctgaatattcaaactcttcctggtgaatatttctgt 89845 Query: 201 cctgtttgtcggacactcatataccccaacgaagctctgcaagctcagtgcacacatctc 260 |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| Sbjct: 89846 cctgtttgtcggacgctcatatgtcccaacgaagctctgcaaactcagtgcacacatctc 89905 Query: 261 tactgcaaaccttgcttggcttatgtagcagcaaccacacaagcctgcccttatgatggt 320 ||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||| Sbjct: 89906 tactgcaaaccctgcttggcttacatagtggcaacaacacaagcctgcccttatgatggc 89965 Query: 321 tacttagtgacggaagctgattccaag 347 || || || || ||||||||||||||| Sbjct: 89966 tatttggttacagaagctgattccaag 89992 Score = 87.7 bits (44), Expect = 3e-14 Identities = 103/120 (85%), Gaps = 2/120 (1%) Strand = Plus / Plus Query: 346 agcctctggtgggttcaaataaatcacttgctgagacaattggtaaagttacagtacaat 405 |||||||| ||| ||||||||| | ||||||||||||||||||||||||||||| || | Sbjct: 90093 agcctctgatggaatcaaataaaccccttgctgagacaattggtaaagttacagtccact 90152 Query: 406 gcctgtacaacaagagtggttgccaatggcaagg-aacctgtctgaatgca-cacacatg 463 | | ||| ||||||||||||| |||||||| || || |||||||| |||| |||||||| Sbjct: 90153 gtcagtatcacaagagtggttgtcaatggcatggtaatctgtctgactgcatcacacatg 90212
>ref|XM_539887.2| PREDICTED: Canis familiaris similar to Thromboxane-A synthase (TXA synthase) (TXS) (LOC482771), mRNA Length = 1741 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 62 ctgggctggtgtggccgggagg 83 |||||||||||||||||||||| Sbjct: 1098 ctgggctggtgtggccgggagg 1077
>gb|AC017109.5| Homo sapiens chromosome 4 clone RP11-568O24, complete sequence Length = 195169 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 187 gtgaatatttttgccctgtttg 208 |||||||||||||||||||||| Sbjct: 91262 gtgaatatttttgccctgtttg 91241
>gb|AC129222.4| Mus musculus BAC clone RP24-532L14 from 14, complete sequence Length = 181469 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 150 gataatgaatgtattctgaatataca 175 |||||||||||||| ||||||||||| Sbjct: 115198 gataatgaatgtatcctgaatataca 115223
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 caaataaatcacttgctgaga 381 ||||||||||||||||||||| Sbjct: 1021978 caaataaatcacttgctgaga 1021958
>gb|AC164432.3| Mus musculus BAC clone RP23-394G23 from chromosome 8, complete sequence Length = 220224 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 ctctgcaagctcagtgcacac 255 ||||||||||||||||||||| Sbjct: 85399 ctctgcaagctcagtgcacac 85379
>gb|AC127165.4| Homo sapiens 12 BAC RP11-240I8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97473 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 179 tcttcctggtgaatatttttgccctgttt 207 |||||||| | |||||||||||||||||| Sbjct: 7798 tcttcctgtttaatatttttgccctgttt 7770
>gb|AC134525.5| Mus musculus BAC clone RP24-496F7 from 8, complete sequence Length = 215900 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 ctctgcaagctcagtgcacac 255 ||||||||||||||||||||| Sbjct: 189487 ctctgcaagctcagtgcacac 189467
>ref|NM_019249.1| Rattus norvegicus protein tyrosine phosphatase, receptor type, F (Ptprf), mRNA Length = 6545 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 3763 tcctgctgctgggctggtgt 3744
>gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, complete sequence Length = 202294 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gatctccctccccgacccct 51 |||||||||||||||||||| Sbjct: 127806 gatctccctccccgacccct 127825
>ref|XM_513383.1| PREDICTED: Pan troglodytes similar to protein tyrosine phosphatase, receptor type, F isoform 2 precursor; protein tyrosine phosphatase, receptor type, F polypeptide; receptor-linked protein-tyrosine phosphatase LAR; LCA-homolog; leukocyte antigen-related tyrosine phosphatase... (LOC456828), mRNA Length = 8844 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 6857 tcctgctgctgggctggtgt 6838
>ref|NM_130440.1| Homo sapiens protein tyrosine phosphatase, receptor type, F (PTPRF), transcript variant 2, mRNA Length = 7691 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 4083 tcctgctgctgggctggtgt 4064
>ref|NM_002840.2| Homo sapiens protein tyrosine phosphatase, receptor type, F (PTPRF), transcript variant 1, mRNA Length = 7718 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 4110 tcctgctgctgggctggtgt 4091
>gb|AC132441.3| Mus musculus BAC clone RP23-239J2 from chromosome 18, complete sequence Length = 189507 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gatctccctccccgacccct 51 |||||||||||||||||||| Sbjct: 37970 gatctccctccccgacccct 37989
>ref|XM_532613.2| PREDICTED: Canis familiaris similar to protein tyrosine phosphatase, receptor type, D isoform 4 precursor, transcript variant 1 (LOC475389), mRNA Length = 6197 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 3767 tcctgctgctgggctggtgt 3748
>ref|XM_857945.1| PREDICTED: Canis familiaris similar to protein tyrosine phosphatase, receptor type, D isoform 4 precursor, transcript variant 6 (LOC475389), mRNA Length = 4908 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 2445 tcctgctgctgggctggtgt 2426
>ref|XM_857919.1| PREDICTED: Canis familiaris similar to protein tyrosine phosphatase, receptor type, D isoform 4 precursor, transcript variant 5 (LOC475389), mRNA Length = 4506 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 2103 tcctgctgctgggctggtgt 2084
>ref|XM_857873.1| PREDICTED: Canis familiaris similar to protein tyrosine phosphatase, receptor type, D isoform 4 precursor, transcript variant 3 (LOC475389), mRNA Length = 6170 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 3740 tcctgctgctgggctggtgt 3721
>gb|AC122258.4| Mus musculus BAC clone RP23-182F18 from 7, complete sequence Length = 186441 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 aacccttactggatagaagttagt 129 ||||||||||||| |||||||||| Sbjct: 19583 aacccttactggacagaagttagt 19560
>gb|BC048768.1| Homo sapiens protein tyrosine phosphatase, receptor type, F, mRNA (cDNA clone MGC:47527 IMAGE:5502598), complete cds Length = 6412 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 4069 tcctgctgctgggctggtgt 4050
>emb|AL023802.1|HS983L19 Human DNA sequence from clone RP5-983L19 on chromosome 22q13.31-33, complete sequence Length = 77022 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 54827 tcctgctgctgggctggtgt 54808
>emb|Z98598.1|SPAC1B3 S.pombe chromosome I cosmid c1B3 Length = 42149 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 aattggtaaagttacagtacaatg 406 |||||||| ||||||||||||||| Sbjct: 31859 aattggtagagttacagtacaatg 31882
>emb|X83505.1|RNLAR1 R.norvegicus mRNA for leucocyte common antigen-related protein (4685 bp) Length = 4685 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 1887 tcctgctgctgggctggtgt 1868
>gb|AC157606.5| Mus musculus chromosome 7, clone RP23-466J2, complete sequence Length = 174676 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 aacccttactggatagaagttagt 129 ||||||||||||| |||||||||| Sbjct: 135522 aacccttactggacagaagttagt 135499
>emb|BX537361.1|HSM805669 Homo sapiens mRNA; cDNA DKFZp686B1310 (from clone DKFZp686B1310) Length = 5953 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 2270 tcctgctgctgggctggtgt 2251
>emb|BX323887.10| Zebrafish DNA sequence from clone CH211-274C22 in linkage group 13, complete sequence Length = 134841 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 gtctgaatgcacacacatgt 464 |||||||||||||||||||| Sbjct: 15128 gtctgaatgcacacacatgt 15147
>dbj|AK125325.1| Homo sapiens cDNA FLJ43335 fis, clone NT2RI3006673, highly similar to LAR protein precursor Length = 4836 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 2010 tcctgctgctgggctggtgt 1991
>dbj|AK127007.1| Homo sapiens cDNA FLJ45062 fis, clone BRAWH3024186, highly similar to LAR protein precursor Length = 4600 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 953 tcctgctgctgggctggtgt 934
>gb|AC091042.6| Homo sapiens chromosome 18, clone RP11-563H6, complete sequence Length = 149173 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 cagcaaccacacaagcctgc 308 |||||||||||||||||||| Sbjct: 92980 cagcaaccacacaagcctgc 92961
>gb|AC092815.2| Homo sapiens chromosome 1 clone RP5-1029K14, complete sequence Length = 126651 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 77782 tcctgctgctgggctggtgt 77801
>dbj|AK167280.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0050A10 product:unclassifiable, full insert sequence Length = 4098 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gatctccctccccgacccct 51 |||||||||||||||||||| Sbjct: 2353 gatctccctccccgacccct 2372
>dbj|AK034455.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330196J19 product:unclassifiable, full insert sequence Length = 2787 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gatctccctccccgacccct 51 |||||||||||||||||||| Sbjct: 2366 gatctccctccccgacccct 2385
>gb|AC090517.2|AC090517 Homo sapiens chromosome 15 clone RP11-31H5 map 15q21.3, complete sequence Length = 185446 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ggctggtgtggccgggaggc 84 |||||||||||||||||||| Sbjct: 47144 ggctggtgtggccgggaggc 47163
>gb|AC126309.8| Homo sapiens 12 BAC RP11-592O2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121984 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 ccttgtcctgctgctgggct 68 |||||||||||||||||||| Sbjct: 50126 ccttgtcctgctgctgggct 50107
>emb|BX816803.1|CNS0AD2V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH69ZE12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1645 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 ttccaagcctctggtgggtt 360 |||||||||||||||||||| Sbjct: 1213 ttccaagcctctggtgggtt 1194
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 acaagcctgcccttatgatg 318 |||||||||||||||||||| Sbjct: 2106527 acaagcctgcccttatgatg 2106546
>ref|XM_346748.1| PREDICTED: Rattus norvegicus protein tyrosine phosphatase, receptor type, F (Ptprf), mRNA Length = 6549 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 3763 tcctgctgctgggctggtgt 3744
>dbj|AB177857.1| Homo sapiens mRNA for LAR Length = 7673 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 4058 tcctgctgctgggctggtgt 4039
>dbj|AB177856.1| Homo sapiens mRNA for LAR splice variant 1 Length = 6398 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 2750 tcctgctgctgggctggtgt 2731
>gb|BC040532.1| Homo sapiens suppressor of hairy wing homolog 4 (Drosophila), mRNA (cDNA clone IMAGE:5261474) Length = 4952 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ggctggtgtggccgggaggc 84 |||||||||||||||||||| Sbjct: 283 ggctggtgtggccgggaggc 264
>gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, complete sequence Length = 183177 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gatctccctccccgacccct 51 |||||||||||||||||||| Sbjct: 172703 gatctccctccccgacccct 172722
>emb|BX950195.14| Zebrafish DNA sequence from clone CH211-232M10 in linkage group 19, complete sequence Length = 149624 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 aatgaatgtattctgaatat 172 |||||||||||||||||||| Sbjct: 117822 aatgaatgtattctgaatat 117803
>gb|AF139813.1|AF139813 Homo sapiens clone pDJ759j12 chromosome 11 map 11q13, complete sequence Length = 142092 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 atctccctccccgaccccttgtcc 56 |||||||||||| ||||||||||| Sbjct: 9609 atctccctcccccaccccttgtcc 9586
>dbj|AP003733.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-810P12, complete sequence Length = 166867 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 atctccctccccgaccccttgtcc 56 |||||||||||| ||||||||||| Sbjct: 28342 atctccctcccccaccccttgtcc 28365
>dbj|AP006260.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-61G16, complete sequence Length = 163024 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 atctccctccccgaccccttgtcc 56 |||||||||||| ||||||||||| Sbjct: 140297 atctccctcccccaccccttgtcc 140320
>gb|L11586.1|RATLARA Rat leukocyte common antigen-related phosphatase (LAR) mRNA, complete cds Length = 6545 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 3763 tcctgctgctgggctggtgt 3744
>gb|AC003025.1|AC003025 Human Chromosome 11p12.2 PAC clone pDJ466a11, complete sequence Length = 112309 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 atctccctccccgaccccttgtcc 56 |||||||||||| ||||||||||| Sbjct: 107343 atctccctcccccaccccttgtcc 107366
>dbj|AB209478.1| Homo sapiens mRNA for protein tyrosine phosphatase, receptor type, F isoform 2 precursor variant protein Length = 6309 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 2707 tcctgctgctgggctggtgt 2688
>gb|AC113952.9| Mus musculus chromosome 3, clone RP24-166J20, complete sequence Length = 157006 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 tgtctgaatgcacacacatg 463 |||||||||||||||||||| Sbjct: 61977 tgtctgaatgcacacacatg 61996
>emb|Y00815.1|HSLARR Human mRNA for LCA-homolog. LAR protein (leukocyte antigen related) Length = 7702 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 4110 tcctgctgctgggctggtgt 4091
>gb|M60103.1|M60103 Rattus norvegicus leukocyte common antigen related protein mRNA, 3' end Length = 4190 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tcctgctgctgggctggtgt 73 |||||||||||||||||||| Sbjct: 641 tcctgctgctgggctggtgt 622 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,333,838 Number of Sequences: 3902068 Number of extensions: 4333838 Number of successful extensions: 83865 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83711 Number of HSP's gapped (non-prelim): 154 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
