>Y1239_AQUAE (O67284) Hypothetical protein aq_1239|
          Length = 111

 Score = 36.2 bits (82), Expect = 0.035
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
 Frame = +1

Query: 202 IMETLKKHLPVSVPEGL-----NELQKIA----VRFEEKIYTAATNQSDYLRKISLXMLS 354
           +METL+K     +P+GL     + L+KI+     R E+ + T     S+ L+KI+L  L 
Sbjct: 14  LMETLEKKKVEKIPQGLQPFDFDSLEKISSERYPRLEQFLSTFTERLSEELKKITLSNLK 73

Query: 355 METKTQQAPGNAQVIPN 405
           ++ K +     ++++PN
Sbjct: 74  VKVKEKDVKPLSKILPN 90

>EX7S_ERWCT (Q6D842) Probable exodeoxyribonuclease VII small subunit (EC|
           3.1.11.6) (Exonuclease VII small subunit)
          Length = 82

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +1

Query: 217 KKHLPVSVPEGLNELQKIAVRFEEKIYTAATNQSDYLRKISLXMLSMETKTQQAPGNAQV 396
           K   PVS    LNEL+KI  R E          +++   I L     + K QQA    Q+
Sbjct: 4   KTEQPVSFESSLNELEKIVTRLESGELPLDDALNEFEHGIQLARQGQQ-KLQQAEQRVQI 62

Query: 397 IPNQNNSAPGLP 432
           + + +  AP  P
Sbjct: 63  LLSDDPDAPLSP 74

>CINA_CLOPE (Q8XP33) CinA-like protein|
          Length = 412

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 319 DYLRKISLXMLSMETKTQQAPGNAQVIPNQNNSAPG 426
           DY +K +L M     K    P  A ++PN N +APG
Sbjct: 101 DYFKKNNLEMTENNKKQCYFPKEAIILPNPNGTAPG 136

>CINA_PROMA (Q7VDS9) CinA-like protein|
          Length = 423

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
 Frame = +1

Query: 187 RIVNKIMETLKKHLPVSVPEGLNE------LQKIAVRFEEKIYTAATNQSDYLRKISLXM 348
           R++  I+E  ++   +    GL        ++ IA  F  K+        D  RK++   
Sbjct: 56  RLLRIILEASRRSRVLITTGGLGPTPDDLTIETIASAFNVKLTKNNDILKDIKRKLNSHS 115

Query: 349 LSMETKTQQA--PGNAQVIPNQNNSAPGL 429
              E   +QA  P  A++IPN++ +APG+
Sbjct: 116 HVSENNFKQALLPEGAEIIPNKSGTAPGI 144

>TRPE_ACICA (P23315) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 497

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 283 EEKIYTAATNQSDYLRKISLXMLSMETKTQQAP 381
           +E+ Y  A NQ DYL ++    +S++ K  +AP
Sbjct: 181 DEEAYQRAQNQLDYLERLLATPVSLQAKKHKAP 213

>HIS5_RHORT (Q2RNA5) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 214

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = -1

Query: 312 IGCCSIDLLFESDSD-FLKFVESLWHRYWQMLLESFHYLIDDPATRL-GLELGAPITS 145
           +G  S+D  F++DS   L  +E   H Y+   + S+H+   DPATRL  +E G P+T+
Sbjct: 129 MGWNSLD--FQADSHALLAGIEPGTHVYF---VHSYHFRPADPATRLASVEYGGPLTA 181

>CP6U1_DROME (Q9V979) Probable cytochrome P450 6u1 (EC 1.14.-.-) (CYPVIU1)|
          Length = 488

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 24/82 (29%), Positives = 38/82 (46%)
 Frame = +1

Query: 169 QPEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATNQSDYLRKISLXM 348
           QPE + R   +I + L++H     PE L EL     R+ +++     N++  L      +
Sbjct: 309 QPEVQDRTRLEINKALEEHGGQVTPECLREL-----RYTKQV----LNETLRLHTPHPFL 359

Query: 349 LSMETKTQQAPGNAQVIPNQNN 414
           L   TK  + PG+  VI   NN
Sbjct: 360 LRRATKEFEVPGSVFVIAKGNN 381

>TIG_PSEAE (Q9I2U2) Trigger factor (TF)|
          Length = 436

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +1

Query: 163 QLQPEARSRIVNKIMETLKKHLPVSVPEGL--NELQKIAVR 279
           +L+   +S++ N++ME L +  P+ VP+ L  NE+ ++ V+
Sbjct: 277 ELRQAIKSKVKNQVMEGLLQANPIEVPKALIGNEVNRLRVQ 317

>VGF_BPPHK (Q38041) Capsid protein (F protein) (GPF)|
          Length = 431

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = -1

Query: 264 LKFVESLWHR-------YWQMLLESFHYLIDDPATRLGLEL 163
           +K  ES+W+R       Y   LLE F +L D P T  G +L
Sbjct: 344 IKVAESIWYRTHPDYVNYKYQLLEGFPFLDDAPGTTSGDDL 384

>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 146  EVIGAPSSSPRRVAGSSIR*WKL-SRSICQYLCQRDSTNFKKSLSDSKRRSILQ 304
            E++G+PS     VAG   R WKL S ++ Q   Q    N  K L   ++R  L+
Sbjct: 1671 ELLGSPSLGENCVAGLKERLWKLESSALEQQKIQSQQENTIKQLEQLRQRFELE 1724

>P5CS_MOUSE (Q9Z110) Delta 1-pyrroline-5-carboxylate synthetase (P5CS)|
           (Aldehyde dehydrogenase 18 family member A1) [Includes:
           Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)
           (GK); Gamma-glutamyl phosphate reductase (GPR) (EC
           1.2.1.41) (Glutamate
          Length = 795

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/81 (18%), Positives = 36/81 (44%)
 Frame = +1

Query: 142 TGGDWRAQLQPEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATNQSD 321
           +GG   A L+PE R+ I+N + + L       +     +L++   R    +    +  + 
Sbjct: 372 SGGRMLATLEPEQRAEIINHLADLLTDQREEILLANKKDLEEAEGRLASPLLKRLSLSTS 431

Query: 322 YLRKISLXMLSMETKTQQAPG 384
            L  +++ +  +   +Q++ G
Sbjct: 432 KLNSLAIGLRQIAASSQESVG 452

>HSP82_ASHGO (Q8J2M3) Heat shock protein HSP82|
          Length = 704

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 196 NKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTA 303
           NKIM+ +KK++   + E  NE+ + + +F EK Y+A
Sbjct: 381 NKIMKVIKKNIVKKLIEAFNEIAEDSEQF-EKFYSA 415

>PHEA_AQUAE (O67085) P-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM);|
           Prephenate dehydratase (EC 4.2.1.51) (PDT)]
          Length = 362

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +1

Query: 181 RSRIVNKIMETLKK-HLPVSVPEGLNELQKIAVRFEEKIYTAATNQSDYL---RKISLXM 348
           R+++  +I E   K +LP+ VPE   E+ +  +R  +++Y     Q   +   R+I    
Sbjct: 25  RAKLAKRIGEIKSKANLPIHVPEREREIFEKILRLNKEVYGGVFPQEALVHIYREIISAC 84

Query: 349 LSMETKTQQA 378
           LS+E K + A
Sbjct: 85  LSLEKKIKVA 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.125    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,803,478
Number of Sequences: 219361
Number of extensions: 826978
Number of successful extensions: 2281
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2281
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)