Clone Information

BLAST Search Result

Clone Name	bastl33e10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|Z83844.5\|HS37E16 Human DNA sequence from clone RP1-37E16 on ...	46	0.088
2	gb\|M57678.1\|HUMHLL4G Human 14 kDa beta-galactoside-binding lecti...	46	0.088
3	gb\|CP000152.1\| Burkholderia sp. 383 chromosome 2, complete sequence	42	1.4
4	gb\|AC133890.16\| Mus musculus chromosome 10, clone RP23-339N24, c...	42	1.4
5	gb\|AC118689.16\| Mus musculus chromosome 10, clone RP23-293N21, c...	42	1.4
6	gb\|AC127699.4\| Mus musculus BAC clone RP24-114P21 from chromosom...	42	1.4
7	emb\|AL358791.24\| Human DNA sequence from clone RP11-42B19 on chr...	42	1.4
8	gb\|AC171009.3\| Gallus gallus BAC clone CH261-146H18 from chromos...	42	1.4
9	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	42	1.4
10	ref\|XM_418968.1\| PREDICTED: Gallus gallus similar to 3110004L20R...	40	5.4
11	gb\|AC133003.3\| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom...	40	5.4
12	gb\|AC120843.11\| Mus musculus chromosome 12, clone RP23-71C5, com...	40	5.4
13	gb\|AY277592.2\| Homo sapiens beta galactosyltransferase (BGALT15)...	40	5.4
14	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	5.4
15	gb\|AC160963.2\| Mus musculus BAC clone RP24-311B3 from chromosome...	40	5.4
16	ref\|XM_534751.2\| PREDICTED: Canis familiaris similar to Glutathi...	40	5.4
17	gb\|AC127231.4\| Mus musculus BAC clone RP24-554M18 from chromosom...	40	5.4
18	gb\|AC116596.3\| Mus musculus BAC clone RP24-335P21 from chromosom...	40	5.4
19	emb\|CR640471.2\|CNS0ET5P Tetraodon nigroviridis full-length cDNA	40	5.4
20	gb\|AC154556.2\| Mus musculus BAC clone RP23-423F3 from chromosome...	40	5.4
21	ref\|NM_198540.2\| Homo sapiens UDP-GlcNAc:betaGal beta-1,3-N-acet...	40	5.4
22	emb\|BX897699.1\| Bartonella henselae strain Houston-1, complete g...	40	5.4
23	emb\|AJ303451.1\|XTR303451 Xenopus tropicalis partial mRNA for cyc...	40	5.4
24	gb\|AC011526.7\| Homo sapiens chromosome 19 clone LLNLR-224F1, com...	40	5.4
25	gb\|AC011462.4\| Homo sapiens chromosome 19 clone CTC-435M10, comp...	40	5.4
26	emb\|X99486.1\|OSRYR2 Oryctolagus sp. RYR2 gene	40	5.4
27	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	5.4
28	emb\|CR388361.6\| Zebrafish DNA sequence from clone DKEY-87J1 in l...	40	5.4
29	gb\|CP000230.1\| Rhodospirillum rubrum ATCC 11170, complete genome	40	5.4
30	gb\|AC154612.2\| Mus musculus BAC clone RP23-338A21 from chromosom...	40	5.4
31	gb\|AC159202.2\| Mus musculus BAC clone RP23-297L21 from chromosom...	40	5.4
32	gb\|AE016819.2\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	5.4
33	gb\|AC034187.6\| Homo sapiens chromosome 3 clone RP11-202A21 map 3...	40	5.4
34	emb\|AL110735.1\|CNS018S8 Botrytis cinerea strain T4 cDNA library	40	5.4
35	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.4
36	gb\|AC155299.2\| Mus musculus BAC clone RP24-229D17 from chromosom...	40	5.4
37	ref\|NM_210719.1\| Eremothecium gossypii AFL185Wp (AFL185W), mRNA	40	5.4
38	gb\|AC169088.2\| Gallus gallus BAC clone CH261-100B3 from chromoso...	40	5.4
39	gb\|AC132615.5\| Mus musculus BAC clone RP23-301J15 from 9, comple...	40	5.4
40	gb\|AC149059.3\| Mus musculus BAC clone RP23-325A2 from 18, comple...	40	5.4

>emb|Z83844.5|HS37E16 Human DNA sequence from clone RP1-37E16 on chromosome 22 Contains the
             3' part of the gene for a novel VHS domain containing
             protein similar to predicted worm and human proteins, the
             SH3BP1 gene for SH3-domain binding protein 1, the gene for
             a novel protein similar to nitrophenylphosphatases from
             various organisms, the LGALS1 gene for soluble
             galactoside-binding lectin 1, a novel gene and the gene
             for a novel protein similar to mouse RIP3 (P116
             Rho-interacting protein) and rat RB109, complete sequence
          Length = 166181

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 117   cccgctccactcctctccccgccctcc 143
             ||||| |||||||||||||||||||||
Sbjct: 51344 cccgccccactcctctccccgccctcc 51318

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>gb|M57678.1|HUMHLL4G Human 14 kDa beta-galactoside-binding lectin (ll4) gene, complete cds
          Length = 4428

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 117  cccgctccactcctctccccgccctcc 143
            ||||| |||||||||||||||||||||
Sbjct: 1948 cccgccccactcctctccccgccctcc 1922

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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 383     caggtgccgccgcccgccgcc 403
               |||||||||||||||||||||
Sbjct: 2730698 caggtgccgccgcccgccgcc 2730718

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>gb|AC133890.16| Mus musculus chromosome 10, clone RP23-339N24, complete sequence
          Length = 211758

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 124   cactcctctccccgccctcct 144
             |||||||||||||||||||||
Sbjct: 25330 cactcctctccccgccctcct 25350

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>gb|AC118689.16| Mus musculus chromosome 10, clone RP23-293N21, complete sequence
          Length = 163917

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 124    cactcctctccccgccctcct 144
              |||||||||||||||||||||
Sbjct: 111679 cactcctctccccgccctcct 111699

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>gb|AC127699.4| Mus musculus BAC clone RP24-114P21 from chromosome 7, complete sequence
          Length = 152811

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 183    caaccaaccacagtttcttct 203
              |||||||||||||||||||||
Sbjct: 109420 caaccaaccacagtttcttct 109440

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>emb|AL358791.24| Human DNA sequence from clone RP11-42B19 on chromosome 10 Contains the
             3' end of a novel gene, complete sequence
          Length = 197389

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   caaccaaccacagtttcttct 203
             |||||||||||||||||||||
Sbjct: 28165 caaccaaccacagtttcttct 28185

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>gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromosome ul, complete
              sequence
          Length = 197416

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 228    gagggggaggaatcattcccc 248
              |||||||||||||||||||||
Sbjct: 195678 gagggggaggaatcattcccc 195658

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 384     aggtgccgccgcccgccgccg 404
               |||||||||||||||||||||
Sbjct: 3385003 aggtgccgccgcccgccgccg 3385023

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>ref|XM_418968.1| PREDICTED: Gallus gallus similar to 3110004L20Rik protein
            (LOC420881), mRNA
          Length = 7004

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 385  ggtgccgccgcccgccgccg 404
            ||||||||||||||||||||
Sbjct: 2574 ggtgccgccgcccgccgccg 2593

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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
             sequence
          Length = 190055

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   ggagagagagggggaggaat 240
             ||||||||||||||||||||
Sbjct: 42427 ggagagagagggggaggaat 42446

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>gb|AC120843.11| Mus musculus chromosome 12, clone RP23-71C5, complete sequence
          Length = 220627

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    gacggagagagagggggagg 237
              ||||||||||||||||||||
Sbjct: 117169 gacggagagagagggggagg 117150

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>gb|AY277592.2| Homo sapiens beta galactosyltransferase (BGALT15) mRNA, complete
           cds
          Length = 1894

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 117 cccgctccactcctctccccgccc 140
           ||||||||||||| ||||||||||
Sbjct: 268 cccgctccactcccctccccgccc 291

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 221      ggagagagagggggaggaat 240
                ||||||||||||||||||||
Sbjct: 21349516 ggagagagagggggaggaat 21349535

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>gb|AC160963.2| Mus musculus BAC clone RP24-311B3 from chromosome 12, complete sequence
          Length = 155386

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    aaccacagtttcttctccct 207
              ||||||||||||||||||||
Sbjct: 105059 aaccacagtttcttctccct 105040

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>ref|XM_534751.2| PREDICTED: Canis familiaris similar to Glutathione S-transferase
           theta 1 (GST class-theta 1) (Glutathione transferase
           T1-1) (LOC477556), mRNA
          Length = 1169

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 tccccgcggccgccccccgc 263
           ||||||||||||||||||||
Sbjct: 143 tccccgcggccgccccccgc 162

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>gb|AC127231.4| Mus musculus BAC clone RP24-554M18 from chromosome 18, complete
             sequence
          Length = 140817

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 41    aaaaagaaagcatccatctgccag 64
             |||| |||||||||||||||||||
Sbjct: 77539 aaaatgaaagcatccatctgccag 77562

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>gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosome 15, complete
             sequence
          Length = 165103

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   ggagagagagggggaggaat 240
             ||||||||||||||||||||
Sbjct: 42490 ggagagagagggggaggaat 42471

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>emb|CR640471.2|CNS0ET5P Tetraodon nigroviridis full-length cDNA
          Length = 1384

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 119 cgctccactcctctccccgccctc 142
           |||||||||||||||||| |||||
Sbjct: 339 cgctccactcctctccccaccctc 316

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>gb|AC154556.2| Mus musculus BAC clone RP23-423F3 from chromosome 14, complete sequence
          Length = 189092

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   aaccaaccacagtttcttctccct 207
             |||||||||||||||| |||||||
Sbjct: 35491 aaccaaccacagtttcctctccct 35468

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>ref|NM_198540.2| Homo sapiens UDP-GlcNAc:betaGal
           beta-1,3-N-acetylglucosaminyltransferase 8 (B3GNT8),
           mRNA
          Length = 1894

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 117 cccgctccactcctctccccgccc 140
           ||||||||||||| ||||||||||
Sbjct: 268 cccgctccactcccctccccgccc 291

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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 154     atggcgacaagacgcggccg 173
               ||||||||||||||||||||
Sbjct: 1019554 atggcgacaagacgcggccg 1019573

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>emb|AJ303451.1|XTR303451 Xenopus tropicalis partial mRNA for cyclin B1
          Length = 516

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 16 tattttggttgactggctgg 35
          ||||||||||||||||||||
Sbjct: 9  tattttggttgactggctgg 28

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>gb|AC011526.7| Homo sapiens chromosome 19 clone LLNLR-224F1, complete sequence
          Length = 40887

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   cccgctccactcctctccccgccc 140
             ||||||||||||| ||||||||||
Sbjct: 31454 cccgctccactcccctccccgccc 31477

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>gb|AC011462.4| Homo sapiens chromosome 19 clone CTC-435M10, complete sequence
          Length = 148841

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  cccgctccactcctctccccgccc 140
            ||||||||||||| ||||||||||
Sbjct: 3524 cccgctccactcccctccccgccc 3547

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>emb|X99486.1|OSRYR2 Oryctolagus sp. RYR2 gene
          Length = 3819

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 221  ggagagagagggggaggaatcattcccc 248
            |||||||||||| ||| |||||||||||
Sbjct: 1104 ggagagagagggagagaaatcattcccc 1131

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    ggtgccgccgcccgccgccg 404
              ||||||||||||||||||||
Sbjct: 957855 ggtgccgccgcccgccgccg 957874

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>emb|CR388361.6| Zebrafish DNA sequence from clone DKEY-87J1 in linkage group 22,
             complete sequence
          Length = 64922

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   caggtgccgccgcccgccgc 402
             ||||||||||||||||||||
Sbjct: 50667 caggtgccgccgcccgccgc 50648

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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 35      gatccgaaaaagaaagcatc 54
               ||||||||||||||||||||
Sbjct: 4315391 gatccgaaaaagaaagcatc 4315372

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>gb|AC154612.2| Mus musculus BAC clone RP23-338A21 from chromosome 14, complete
             sequence
          Length = 197282

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 184   aaccaaccacagtttcttctccct 207
             |||||||||||||||| |||||||
Sbjct: 64872 aaccaaccacagtttcctctccct 64895

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>gb|AC159202.2| Mus musculus BAC clone RP23-297L21 from chromosome 12, complete sequence
          Length = 210589

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    gacggagagagagggggagg 237
              ||||||||||||||||||||
Sbjct: 188631 gacggagagagagggggagg 188650

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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
             complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   gccaaccaaccacagtttct 200
             ||||||||||||||||||||
Sbjct: 94711 gccaaccaaccacagtttct 94692

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>gb|AC034187.6| Homo sapiens chromosome 3 clone RP11-202A21 map 3p, complete sequence
          Length = 171716

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 177   aagcgccaaccaaccacagtttct 200
             |||| |||||||||||||||||||
Sbjct: 84641 aagccccaaccaaccacagtttct 84618

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>emb|AL110735.1|CNS018S8 Botrytis cinerea strain T4 cDNA library
          Length = 1020

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 112 tcctccccgctccactcctctccccgccctcc 143
           |||||| | |||||||||||||||| ||||||
Sbjct: 691 tcctcctccctccactcctctcccctccctcc 722

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 221      ggagagagagggggaggaat 240
                ||||||||||||||||||||
Sbjct: 21342545 ggagagagagggggaggaat 21342564

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>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete
             sequence
          Length = 198559

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   ggagagagagggggaggaat 240
             ||||||||||||||||||||
Sbjct: 12555 ggagagagagggggaggaat 12574

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>ref|NM_210719.1| Eremothecium gossypii AFL185Wp (AFL185W), mRNA
          Length = 2877

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  gccaaccaaccacagtttct 200
            ||||||||||||||||||||
Sbjct: 1187 gccaaccaaccacagtttct 1168

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>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence
          Length = 214859

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     atctgccagtgtttacatgg 75
              ||||||||||||||||||||
Sbjct: 205810 atctgccagtgtttacatgg 205829

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>gb|AC132615.5| Mus musculus BAC clone RP23-301J15 from 9, complete sequence
          Length = 201718

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   ccaaccacagtttcttctcc 205
             ||||||||||||||||||||
Sbjct: 12983 ccaaccacagtttcttctcc 13002

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>gb|AC149059.3| Mus musculus BAC clone RP23-325A2 from 18, complete sequence
          Length = 206973

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 41     aaaaagaaagcatccatctgccag 64
              |||| |||||||||||||||||||
Sbjct: 121673 aaaatgaaagcatccatctgccag 121696


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,751,490
Number of Sequences: 3902068
Number of extensions: 3751490
Number of successful extensions: 104716
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104180
Number of HSP's gapped (non-prelim): 536
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result