ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33e08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK111686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170K17, full insert sequence Length = 4534 Score = 611 bits (308), Expect = e-172 Identities = 408/440 (92%), Gaps = 1/440 (0%) Strand = Plus / Plus Query: 1 aaaactttagccatatgggataccgttacattcaaggaaataaggcgcattaaaccagtg 60 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 1018 aaaactttagccatatgggatactgttacatttaaggaaataagacgcattaaaccagta 1077 Query: 61 cctaaacttgcctgccatagtgttgcatcttggtgccaccctcgtgcaccaaaccttgat 120 ||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 1078 cctaaacttgcttgccatagtgttgcatcgtggtgtcatcctcgtgcaccaaaccttgat 1137 Query: 121 attctgacttgtgtcaaggactcccatatttgggccatagaacatccgacttattctgct 180 ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct: 1138 attctgacttgtgtcaaggactcccatatatgggccatagaacatccaacctattctgct 1197 Query: 181 ttaacaagaccactctgcgaattgtcctcgcttgttcctccgcaagcccttgcacagcat 240 ||||||||||||||||| ||| ||||||| ||||||||||| |||| |||| |||| ||| Sbjct: 1198 ttaacaagaccactctgtgaactgtcctctcttgttcctccacaagtccttacacaacat 1257 Query: 241 aa-aaactgagggtttactgcatggtggcacatcccttgcaaccacatcttgttgctact 299 || ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 1258 aagaaattgagggtttactgcatggtggcacaccccttacaaccacatcttgttgctact 1317 Query: 300 ggaacaaatatcggtattattttaagtgagttcgatccaagagcactaccggctgttgct 359 ||||| ||||| |||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct: 1318 ggaactaatattggtattattttaagcgagttcgatccaagagcacttccagctgttgct 1377 Query: 360 cctctaccagcactgacagaaagcaaggaacactctgctgtttacattgttgaaagagaa 419 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1378 cctctaccaacaccagcagaaagcaaggaacactctgctgtttacattgttgaaagagaa 1437 Query: 420 cttaagttgctgaatttcca 439 |||||| ||||||||||||| Sbjct: 1438 cttaagctgctgaatttcca 1457
>dbj|AK111531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022M05, full insert sequence Length = 2417 Score = 611 bits (308), Expect = e-172 Identities = 408/440 (92%), Gaps = 1/440 (0%) Strand = Plus / Plus Query: 1 aaaactttagccatatgggataccgttacattcaaggaaataaggcgcattaaaccagtg 60 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 1019 aaaactttagccatatgggatactgttacatttaaggaaataagacgcattaaaccagta 1078 Query: 61 cctaaacttgcctgccatagtgttgcatcttggtgccaccctcgtgcaccaaaccttgat 120 ||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 1079 cctaaacttgcttgccatagtgttgcatcgtggtgtcatcctcgtgcaccaaaccttgat 1138 Query: 121 attctgacttgtgtcaaggactcccatatttgggccatagaacatccgacttattctgct 180 ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct: 1139 attctgacttgtgtcaaggactcccatatatgggccatagaacatccaacctattctgct 1198 Query: 181 ttaacaagaccactctgcgaattgtcctcgcttgttcctccgcaagcccttgcacagcat 240 ||||||||||||||||| ||| ||||||| ||||||||||| |||| |||| |||| ||| Sbjct: 1199 ttaacaagaccactctgtgaactgtcctctcttgttcctccacaagtccttacacaacat 1258 Query: 241 aa-aaactgagggtttactgcatggtggcacatcccttgcaaccacatcttgttgctact 299 || ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 1259 aagaaattgagggtttactgcatggtggcacaccccttacaaccacatcttgttgctact 1318 Query: 300 ggaacaaatatcggtattattttaagtgagttcgatccaagagcactaccggctgttgct 359 ||||| ||||| |||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct: 1319 ggaactaatattggtattattttaagcgagttcgatccaagagcacttccagctgttgct 1378 Query: 360 cctctaccagcactgacagaaagcaaggaacactctgctgtttacattgttgaaagagaa 419 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1379 cctctaccaacaccagcagaaagcaaggaacactctgctgtttacattgttgaaagagaa 1438 Query: 420 cttaagttgctgaatttcca 439 |||||| ||||||||||||| Sbjct: 1439 cttaagctgctgaatttcca 1458
>ref|NM_192414.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 504 Score = 337 bits (170), Expect = 2e-89 Identities = 224/242 (92%) Strand = Plus / Plus Query: 1 aaaactttagccatatgggataccgttacattcaaggaaataaggcgcattaaaccagtg 60 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 193 aaaactttagccatatgggatactgttacatttaaggaaataagacgcattaaaccagta 252 Query: 61 cctaaacttgcctgccatagtgttgcatcttggtgccaccctcgtgcaccaaaccttgat 120 ||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 253 cctaaacttgcttgccatagtgttgcatcgtggtgtcatcctcgtgcaccaaaccttgat 312 Query: 121 attctgacttgtgtcaaggactcccatatttgggccatagaacatccgacttattctgct 180 ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct: 313 attctgacttgtgtcaaggactcccatatatgggccatagaacatccaacctattctgct 372 Query: 181 ttaacaagaccactctgcgaattgtcctcgcttgttcctccgcaagcccttgcacagcat 240 ||||||||||||||||| ||| ||||||| ||||||||||| |||| |||| |||| ||| Sbjct: 373 ttaacaagaccactctgtgaactgtcctctcttgttcctccacaagtccttacacaacat 432 Query: 241 aa 242 || Sbjct: 433 aa 434
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 280 bits (141), Expect = 4e-72 Identities = 177/189 (93%) Strand = Plus / Minus Query: 251 ggtttactgcatggtggcacatcccttgcaaccacatcttgttgctactggaacaaatat 310 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 26454458 ggtttactgcatggtggcacaccccttacaaccacatcttgttgctactggaactaatat 26454399 Query: 311 cggtattattttaagtgagttcgatccaagagcactaccggctgttgctcctctaccagc 370 |||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | Sbjct: 26454398 tggtattattttaagcgagttcgatccaagagcacttccagctgttgctcctctaccaac 26454339 Query: 371 actgacagaaagcaaggaacactctgctgtttacattgttgaaagagaacttaagttgct 430 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 26454338 accagcagaaagcaaggaacactctgctgtttacattgttgaaagagaacttaagctgct 26454279 Query: 431 gaatttcca 439 ||||||||| Sbjct: 26454278 gaatttcca 26454270 Score = 180 bits (91), Expect = 3e-42 Identities = 109/115 (94%) Strand = Plus / Minus Query: 35 aggaaataaggcgcattaaaccagtgcctaaacttgcctgccatagtgttgcatcttggt 94 |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| Sbjct: 26455466 aggaaataagacgcattaaaccagtacctaaacttgcttgccatagtgttgcatcgtggt 26455407 Query: 95 gccaccctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccatat 149 | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26455406 gtcatcctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccatat 26455352 Score = 109 bits (55), Expect = 8e-21 Identities = 82/91 (90%) Strand = Plus / Minus Query: 152 gggccatagaacatccgacttattctgctttaacaagaccactctgcgaattgtcctcgc 211 |||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||| | Sbjct: 26455241 gggccatagaacatccaacctattctgctttaacaagaccactctgtgaactgtcctctc 26455182 Query: 212 ttgttcctccgcaagcccttgcacagcataa 242 |||||||||| |||| |||| |||| ||||| Sbjct: 26455181 ttgttcctccacaagtccttacacaacataa 26455151 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 1 aaaactttagccatatgggataccgttacattcaagg 37 ||||||||||||||||||||||| |||||||| |||| Sbjct: 26455582 aaaactttagccatatgggatactgttacatttaagg 26455546
>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0006H05 Length = 154821 Score = 280 bits (141), Expect = 4e-72 Identities = 177/189 (93%) Strand = Plus / Minus Query: 251 ggtttactgcatggtggcacatcccttgcaaccacatcttgttgctactggaacaaatat 310 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 63077 ggtttactgcatggtggcacaccccttacaaccacatcttgttgctactggaactaatat 63018 Query: 311 cggtattattttaagtgagttcgatccaagagcactaccggctgttgctcctctaccagc 370 |||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | Sbjct: 63017 tggtattattttaagcgagttcgatccaagagcacttccagctgttgctcctctaccaac 62958 Query: 371 actgacagaaagcaaggaacactctgctgtttacattgttgaaagagaacttaagttgct 430 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 62957 accagcagaaagcaaggaacactctgctgtttacattgttgaaagagaacttaagctgct 62898 Query: 431 gaatttcca 439 ||||||||| Sbjct: 62897 gaatttcca 62889 Score = 180 bits (91), Expect = 3e-42 Identities = 109/115 (94%) Strand = Plus / Minus Query: 35 aggaaataaggcgcattaaaccagtgcctaaacttgcctgccatagtgttgcatcttggt 94 |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| Sbjct: 64085 aggaaataagacgcattaaaccagtacctaaacttgcttgccatagtgttgcatcgtggt 64026 Query: 95 gccaccctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccatat 149 | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64025 gtcatcctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccatat 63971 Score = 109 bits (55), Expect = 8e-21 Identities = 82/91 (90%) Strand = Plus / Minus Query: 152 gggccatagaacatccgacttattctgctttaacaagaccactctgcgaattgtcctcgc 211 |||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||| | Sbjct: 63860 gggccatagaacatccaacctattctgctttaacaagaccactctgtgaactgtcctctc 63801 Query: 212 ttgttcctccgcaagcccttgcacagcataa 242 |||||||||| |||| |||| |||| ||||| Sbjct: 63800 ttgttcctccacaagtccttacacaacataa 63770 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 1 aaaactttagccatatgggataccgttacattcaagg 37 ||||||||||||||||||||||| |||||||| |||| Sbjct: 64201 aaaactttagccatatgggatactgttacatttaagg 64165
>ref|NM_192413.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3012 Score = 260 bits (131), Expect = 3e-66 Identities = 167/179 (93%) Strand = Plus / Plus Query: 261 atggtggcacatcccttgcaaccacatcttgttgctactggaacaaatatcggtattatt 320 ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 1 atggtggcacaccccttacaaccacatcttgttgctactggaactaatattggtattatt 60 Query: 321 ttaagtgagttcgatccaagagcactaccggctgttgctcctctaccagcactgacagaa 380 ||||| |||||||||||||||||||| || |||||||||||||||||| ||| ||||| Sbjct: 61 ttaagcgagttcgatccaagagcacttccagctgttgctcctctaccaacaccagcagaa 120 Query: 381 agcaaggaacactctgctgtttacattgttgaaagagaacttaagttgctgaatttcca 439 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 121 agcaaggaacactctgctgtttacattgttgaaagagaacttaagctgctgaatttcca 179
>ref|NM_122380.3| Arabidopsis thaliana unknown protein AT5G24710 mRNA, complete cds Length = 4477 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 49 attaaaccagtgcctaaacttgcctgccatagtgttgcatcttggtgccaccctcgtgca 108 |||||||| || || ||||| || ||||| ||||||||||||||||| |||||||| || Sbjct: 1226 attaaacctgtcccgaaactagcttgccacagtgttgcatcttggtgtcaccctcgagcg 1285 Query: 109 ccaaaccttgatattctgacttg 131 ||||||||||||||| ||||||| Sbjct: 1286 ccaaaccttgatattttgacttg 1308
>dbj|AB016881.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC17 Length = 27263 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 49 attaaaccagtgcctaaacttgcctgccatagtgttgcatcttggtgccaccctcgtgca 108 |||||||| || || ||||| || ||||| ||||||||||||||||| |||||||| || Sbjct: 25048 attaaacctgtcccgaaactagcttgccacagtgttgcatcttggtgtcaccctcgagcg 24989 Query: 109 ccaaaccttgatattctgacttg 131 ||||||||||||||| ||||||| Sbjct: 24988 ccaaaccttgatattttgacttg 24966
>gb|AC149038.2| Medicago truncatula chromosome 7 BAC clone mth2-29a5, complete sequence Length = 136566 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 70 gcctgccatagtgttgcatcttggtgccaccctcgtgcaccaaaccttgatattctgact 129 |||||||| ||||| || ||||||||||||||||| || || |||||||||||||| || Sbjct: 39959 gcctgccacagtgtggcttcttggtgccaccctcgagctccgaaccttgatattctaacc 40018 Query: 130 tgtgtcaa 137 |||||||| Sbjct: 40019 tgtgtcaa 40026 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 261 atggtggcacatcccttgcaaccacatcttgttgctactggaacaaatat 310 ||||| |||||| | ||||| |||||||||||||||| |||||| ||||| Sbjct: 40615 atggttgcacatactttgcagccacatcttgttgctattggaaccaatat 40664
>emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on chromosome Xq27.1-28, complete sequence Length = 147043 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cattgttgaaagagaacttaa 424 ||||||||||||||||||||| Sbjct: 130274 cattgttgaaagagaacttaa 130254
>gb|AC146585.18| Medicago truncatula clone mth2-68o3, complete sequence Length = 124526 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 gcacatcccttgcaaccaca 286 |||||||||||||||||||| Sbjct: 36166 gcacatcccttgcaaccaca 36147
>emb|AL589765.19| Human DNA sequence from clone RP11-98D18 on chromosome 1 Contains the 3' end of the SNX27 gene for sorting nexin family member 27, the TNRC4 gene for trinucleotide repeat containing 4, five novel genes, a ribosomal protein S11 (RPS11) pseudogene, the MRPL9 gene for mitochondrial ribosomal protein L9, the OAZ3 gene for ornithine decarboxylase antizyme 3, a novel gene (FLJ36032) the TDRKH gene for tudor and KH domain containing, the RORC gene for RAR-related orphan receptor C and four CpG islands, complete sequence Length = 163389 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 agcactgacagaaagcaagg 387 |||||||||||||||||||| Sbjct: 40361 agcactgacagaaagcaagg 40342
>emb|CR406393.1| Gallus gallus finished cDNA, clone ChEST756j24 Length = 818 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tgctgtttacattgttgaaa 414 |||||||||||||||||||| Sbjct: 478 tgctgtttacattgttgaaa 497
>gb|AY224188.1| Medicago truncatula adenosylhomocysteinase (AHC1) gene, complete cds Length = 99431 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 gcacatcccttgcaaccaca 286 |||||||||||||||||||| Sbjct: 25066 gcacatcccttgcaaccaca 25085
>gb|AC154685.2| Mus musculus BAC clone RP24-321G16 from chromosome 17, complete sequence Length = 162362 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ttgctactggaacaaatatc 311 |||||||||||||||||||| Sbjct: 130742 ttgctactggaacaaatatc 130723
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tcttggtgccaccctcgtgc 107 |||||||||||||||||||| Sbjct: 2906680 tcttggtgccaccctcgtgc 2906699
>gb|AC007103.4|AC007103 Homo sapiens chromosome 4 clone C0190D22 map 4p16, complete sequence Length = 181571 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 accttgatattctgacttgt 132 |||||||||||||||||||| Sbjct: 35821 accttgatattctgacttgt 35802
>gb|AC154673.2| Mus musculus BAC clone RP24-298M20 from chromosome 17, complete sequence Length = 157621 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ttgctactggaacaaatatc 311 |||||||||||||||||||| Sbjct: 9069 ttgctactggaacaaatatc 9050 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,915,286 Number of Sequences: 3902068 Number of extensions: 3915286 Number of successful extensions: 94909 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94847 Number of HSP's gapped (non-prelim): 60 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
