ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33d12 |
|---|---|
| Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 57.4 bits (137), Expect = 9e-09 Identities = 28/41 (68%), Positives = 28/41 (68%) Frame = +3 Query: 141 MLTATKPLVGGXXXXXXXXXXXXXFVVPEARRKPGNGRRTS 263 MLTATKPLVGG FVVPEARRKPGNGRRTS Sbjct: 1 MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTS 41
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 32.3 bits (72), Expect = 0.33 Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +3 Query: 141 MLTATKPLVGGXXXXXXXXXXXXXFVVPEARRKPG-NGRRT 260 M TATKPLVG F+V EARRKP N RRT Sbjct: 1 MQTATKPLVGARAVPLSRRAS---FLVAEARRKPSTNARRT 38
>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) Length = 1200 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = -3 Query: 240 VSGEPRAPRTPSAGPTTTARHTRPRLAAWSPSA 142 +S EPR PR S+ RH RP L A P A Sbjct: 71 LSREPRGPRALSSFVRDARRHPRPALTASPPPA 103
>I28RA_HUMAN (Q8IU57) Interleukin-28 receptor alpha chain precursor| (IL-28R-alpha) (IL-28RA) (Cytokine receptor family 2 member 12) (Cytokine receptor class-II member 12) (CRF2-12) (Interferon lambda receptor 1) (IFN-lambda R1) (Likely interleukin or cyto Length = 520 Score = 28.9 bits (63), Expect = 3.6 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -3 Query: 237 SGEPRAPRTPSAGPTTTARHTRPRLAAWSPSASWVRYG-VGYCATRWGGR 91 SG PRAP PS G ++A + R A + +SW R G GY A + G+ Sbjct: 367 SGRPRAPLVPSEG--SSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQ 414
>VE2_HPV36 (P50809) Regulatory protein E2| Length = 509 Score = 28.5 bits (62), Expect = 4.7 Identities = 24/73 (32%), Positives = 32/73 (43%) Frame = -3 Query: 234 GEPRAPRTPSAGPTTTARHTRPRLAAWSPSASWVRYGVGYCATRWGGRLHRLGWFRPS*T 55 G R R+PS +TT + R R+ A + + R G G GGR R G R S + Sbjct: 323 GRRRRSRSPSTSSSTTTTNKRSRVRAETTGSRGARGGRGARGGSGGGR--RRG--RSSSS 378 Query: 54 VQPCPGRSGKEEV 16 P RS + V Sbjct: 379 TSPAHKRSREHSV 391
>CSPG3_RAT (P55067) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) (245 kDa early postnatal core glycoprotein) [Contains: 150 kDa adult core glycoprotein] Length = 1257 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 134 THDADGDQAASRGRVCRAVVVGPAEGVRGARGSPETRQWPP 256 T + DQ+ S + V P G G+R PE+R+W P Sbjct: 525 TEALESDQSHSPWAILTNEVDVPGAGSLGSRSLPESRKWSP 565
>ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA| ligase 2) (Acyl-activating enzyme 2) Length = 644 Score = 28.1 bits (61), Expect = 6.2 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -3 Query: 108 TRWGGRLHRLGWFRPS*TVQPCPGRSGKEEVMEGS 4 T W + RL W +P +VQ C +GK +G+ Sbjct: 37 TFWAEQAKRLDWIKPWSSVQQCDLHTGKARWFDGA 71
>P53_TUPGB (Q9TTA1) Cellular tumor antigen p53 (Tumor suppressor p53)| Length = 393 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = -3 Query: 234 GEPRAPRTPSAGPTTTARHTRPRLAAWSPSASW 136 G APR P A P P AA +P+ SW Sbjct: 59 GPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSW 91
>P53_HUMAN (P04637) Cellular tumor antigen p53 (Tumor suppressor p53)| (Phosphoprotein p53) (Antigen NY-CO-13) Length = 393 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = -3 Query: 234 GEPRAPRTPSAGPTTTARHTRPRLAAWSPSASW 136 G APR P A P P AA +P+ SW Sbjct: 59 GPDEAPRMPEAAPPVAPAPAAPTPAAPAPAPSW 91
>LIN26_CAEEL (Q27355) Transcription factor lin-26 (Abnormal cell lineage protein| 26) Length = 438 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -3 Query: 222 APRTPSAGPTTTARHTRPRLAAWSPSA 142 +P +PS +T A+HT PR A +P++ Sbjct: 51 SPESPSTTASTAAQHTPPRTAVSTPTS 77
>TBX21_MOUSE (Q9JKD8) T-box transcription factor TBX21 (T-box protein 21)| (Transcription factor TBLYM) (T-cell-specific T-box transcription factor T-bet) Length = 530 Score = 27.7 bits (60), Expect = 8.1 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = -3 Query: 210 PSA-GPTTTARHTRPRLAAWSPSASWVRYGVGYCATRWGGRLHRLGWFRPS*TVQPCPGR 34 PSA GPT + LA P A W A ++ ++ GWFRP T+ PG Sbjct: 409 PSAPGPTVPYYRGQDVLA---PGAGWP------VAPQYPPKMSPAGWFRPMRTLPMDPGL 459 Query: 33 SGKEE 19 EE Sbjct: 460 GSSEE 464
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 27.7 bits (60), Expect = 8.1 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = +2 Query: 140 DADGDQAASRGRVCRAVVVGPAEGVRGARGSPETRQWPP 256 D DG+ AA R RAV GP+ A G PP Sbjct: 204 DDDGNDAADHAREARAVGRGPSSAAPAAPGRTPPPPGPP 242 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,295,137 Number of Sequences: 219361 Number of extensions: 822369 Number of successful extensions: 2448 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2446 length of database: 80,573,946 effective HSP length: 63 effective length of database: 66,754,203 effective search space used: 1602100872 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
