>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 89     cgctgtccttgcttcttctggcggcgcggctc 120
              |||||||||| | || ||||||||||||||||
Sbjct: 312058 cgctgtccttccgtcgtctggcggcgcggctc 312089

>gb|U31284.1|MCU31284 Mesotaenium caldariorum clone mesphy1b phytochrome gene, complete cds
          Length = 10878

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   gagcgagagcgtggtgggcg 36
            ||||||||||||||||||||
Sbjct: 7714 gagcgagagcgtggtgggcg 7733

>gb|U31283.1|MCU31283 Mesotaenium caldariorum clone mesphy1a phytochrome gene, partial cds,
            exons 4 through 10
          Length = 4727

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   gagcgagagcgtggtgggcg 36
            ||||||||||||||||||||
Sbjct: 2994 gagcgagagcgtggtgggcg 3013

>gb|AC116389.12| Mus musculus chromosome 7, clone RP23-21B1, complete sequence
          Length = 236139

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 92    tgtccttgcttcttctggc 110
             |||||||||||||||||||
Sbjct: 57519 tgtccttgcttcttctggc 57537

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 108      ggcggcgcggctcgccgcg 126
                |||||||||||||||||||
Sbjct: 12795355 ggcggcgcggctcgccgcg 12795337

>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   ggcggcgcggctcgccgcg 126
             |||||||||||||||||||
Sbjct: 33571 ggcggcgcggctcgccgcg 33553

>emb|Z83217.2|CEC10C6 Caenorhabditis elegans Cosmid C10C6, complete sequence
          Length = 43789

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    cgagaaggccggcagctcg 61
             |||||||||||||||||||
Sbjct: 16574 cgagaaggccggcagctcg 16556

>gb|AC118931.8| Mus musculus chromosome 19, clone RP24-118A21, complete sequence
          Length = 233367

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    tgggcgagcgaacgagaag 49
             |||||||||||||||||||
Sbjct: 70781 tgggcgagcgaacgagaag 70763

>gb|AC130800.23| Medicago truncatula clone mth2-36b7, complete sequence
          Length = 133868

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    cgagagcgtggtgggcgag 38
             |||||||||||||||||||
Sbjct: 95718 cgagagcgtggtgggcgag 95700

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 108     ggcggcgcggctcgccgcg 126
               |||||||||||||||||||
Sbjct: 2861623 ggcggcgcggctcgccgcg 2861605

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 108      ggcggcgcggctcgccgcg 126
                |||||||||||||||||||
Sbjct: 12792118 ggcggcgcggctcgccgcg 12792100

>dbj|AB125811.1| Mus terricolor irbp gene for interphotoreceptor retinoid-binding
           protein, partial cds, isolate:HS1468
          Length = 1152

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 26  cgtggtgggcgagcgaacg 44
           |||||||||||||||||||
Sbjct: 549 cgtggtgggcgagcgaacg 567

>dbj|AB125810.1| Mus terricolor irbp gene for interphotoreceptor retinoid-binding
           protein, partial cds, isolate:HS2334
          Length = 1152

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 26  cgtggtgggcgagcgaacg 44
           |||||||||||||||||||
Sbjct: 549 cgtggtgggcgagcgaacg 567

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 59      tcgggatgggctggttcgc 77
               |||||||||||||||||||
Sbjct: 3283037 tcgggatgggctggttcgc 3283019


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 752,846
Number of Sequences: 3902068
Number of extensions: 752846
Number of successful extensions: 57609
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57189
Number of HSP's gapped (non-prelim): 420
length of query: 126
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 105
effective length of database: 17,151,101,840
effective search space: 1800865693200
effective search space used: 1800865693200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)