ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33d07 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 65.9 bits (159), Expect = 4e-11 Identities = 29/52 (55%), Positives = 41/52 (78%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATE 426 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLLNQG+ F +EATE Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEATE 68
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 65.5 bits (158), Expect = 5e-11 Identities = 29/52 (55%), Positives = 40/52 (76%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATE 426 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLLNQG+ F EATE Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEATE 68
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 62.0 bits (149), Expect = 6e-10 Identities = 27/52 (51%), Positives = 39/52 (75%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATE 426 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+NQG+ EATE Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATE 68
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 62.0 bits (149), Expect = 6e-10 Identities = 27/52 (51%), Positives = 39/52 (75%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATE 426 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+NQG+ EATE Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATE 68
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 55.5 bits (132), Expect = 5e-08 Identities = 21/47 (44%), Positives = 38/47 (80%) Frame = +1 Query: 286 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATE 426 ++K +VLQEAR F++ ++AR+CC +++KL+Y++ QG++ + EATE Sbjct: 18 LDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGRTEATE 64
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 37.0 bits (84), Expect = 0.020 Identities = 16/53 (30%), Positives = 32/53 (60%) Frame = +1 Query: 271 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEV 429 S F + + V Q+AR F+ + R+ ++++K+ YL+ G+ F + +ATE+ Sbjct: 13 SIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATEL 65
>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 935 Score = 34.3 bits (77), Expect = 0.13 Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Frame = +1 Query: 289 EKGAVLQEA-RVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEAT 423 +K + Q+ F++ ++++RC +I++LL LL QG+TF + EAT Sbjct: 19 DKMTIYQDCMNTFNESPVNSKRCRLLISRLLRLLAQGETFPQNEAT 64
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +2 Query: 80 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 166 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +2 Query: 80 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 166 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>MTB1_BRUAB (P0C116) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 354 ASPRIKLRVVEDAGLLQDGTLLDAEERR 271 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>MTB1_BRUA2 (Q2YMK2) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 354 ASPRIKLRVVEDAGLLQDGTLLDAEERR 271 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>ST32C_HUMAN (Q86UX6) Serine/threonine-protein kinase 32C (EC 2.7.11.1) (PKE)| (YANK3) Length = 486 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 Query: 104 KDSRELSRRPAPPPFSRHSGRPGRTIRARIAPPQQGP 214 K S++L R P P P SR + P R A P GP Sbjct: 442 KRSQDLPREPLPAPESRDAAEPVEDEAERSALPMCGP 478
>VE4_HPV08 (P06425) Probable protein E4| Length = 229 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = +2 Query: 71 PVQSSLAKPRDKDSRELSRRPAPPPFSRHSGRPGRTIRARIAP---PQQGP 214 P+Q+S KP+ KD RPA + G GR +AP P GP Sbjct: 46 PLQNSHNKPKPKDEGTGDGRPAEQDRKKSRGDQGRDTAPGLAPGRSPGLGP 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,045,890 Number of Sequences: 219361 Number of extensions: 674379 Number of successful extensions: 2519 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2373 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2504 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
