ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33d07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3193 Score = 307 bits (155), Expect = 2e-80 Identities = 197/211 (93%) Strand = Plus / Plus Query: 218 cgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactactcgccgt 277 ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 234 cgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactactcgccgt 293 Query: 278 tcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagc 337 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 294 tcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgacccgcagc 353 Query: 338 ttgatgcgcggcgatgctgccaggtgatcaccaagcttctatatctgctcaaccagggtg 397 | || ||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct: 354 tcgacgcgcgccgttgctgccaggtcatcaccaagctcctatacctgctcaaccagggtg 413 Query: 398 acacctttaccaaggtagaggccacagaggt 428 ||||||| |||||||| |||||||||||||| Sbjct: 414 acaccttcaccaaggtggaggccacagaggt 444
>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full insert sequence Length = 3193 Score = 307 bits (155), Expect = 2e-80 Identities = 197/211 (93%) Strand = Plus / Plus Query: 218 cgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactactcgccgt 277 ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 234 cgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactactcgccgt 293 Query: 278 tcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagc 337 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 294 tcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgacccgcagc 353 Query: 338 ttgatgcgcggcgatgctgccaggtgatcaccaagcttctatatctgctcaaccagggtg 397 | || ||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct: 354 tcgacgcgcgccgttgctgccaggtcatcaccaagctcctatacctgctcaaccagggtg 413 Query: 398 acacctttaccaaggtagaggccacagaggt 428 ||||||| |||||||| |||||||||||||| Sbjct: 414 acaccttcaccaaggtggaggccacagaggt 444
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 159 bits (80), Expect = 9e-36 Identities = 98/104 (94%) Strand = Plus / Plus Query: 261 agagtactactcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 320 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 5484834 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 5484893 Query: 321 cttccacgacccgcagcttgatgcgcggcgatgctgccaggtga 364 |||||||||||||||||| || ||||| || ||||||||||||| Sbjct: 5484894 cttccacgacccgcagctcgacgcgcgccgttgctgccaggtga 5484937 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 359 aggtgatcaccaagcttctatatctgctcaaccagggtgacacctttaccaaggta 414 |||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct: 5485026 aggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggta 5485081 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 218 cgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 262 ||||||||||||||||||||||||||||||| | |||||||||| Sbjct: 5484557 cgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 5484601 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cttcctcctctctcctgttc 77 |||||||||||||||||||| Sbjct: 10754361 cttcctcctctctcctgttc 10754380
>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E02 Length = 139321 Score = 159 bits (80), Expect = 9e-36 Identities = 98/104 (94%) Strand = Plus / Plus Query: 261 agagtactactcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 320 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 118815 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 118874 Query: 321 cttccacgacccgcagcttgatgcgcggcgatgctgccaggtga 364 |||||||||||||||||| || ||||| || ||||||||||||| Sbjct: 118875 cttccacgacccgcagctcgacgcgcgccgttgctgccaggtga 118918 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 359 aggtgatcaccaagcttctatatctgctcaaccagggtgacacctttaccaaggta 414 |||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct: 119007 aggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggta 119062 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 218 cgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 262 ||||||||||||||||||||||||||||||| | |||||||||| Sbjct: 118538 cgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 118582
>gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, complete sequence Length = 127374 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 ctcttcctcctctctcctgttc 77 |||||||||||||||||||||| Sbjct: 22687 ctcttcctcctctctcctgttc 22708
>gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p23, complete sequence Length = 151329 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 56 ctcttcctcctctctcctgttc 77 |||||||||||||||||||||| Sbjct: 93539 ctcttcctcctctctcctgttc 93518
>gb|AF214636.4| Homo sapiens chromosome 8 clone RP4-605G11 map p23, complete sequence Length = 95741 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 56 ctcttcctcctctctcctgttc 77 |||||||||||||||||||||| Sbjct: 11821 ctcttcctcctctctcctgttc 11800
>gb|AC135112.5| Mus musculus BAC clone RP23-477F17 from chromosome unknown, complete sequence Length = 178498 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Minus Query: 55 cctcttcctcctctctcctgttcagtcctc 84 ||||||||||||||||||| || ||||||| Sbjct: 119184 cctcttcctcctctctcctttttagtcctc 119155
>gb|AY123972.1| Arthrobacter sp. BP2 cyclohexanone oxidation gene cluster, partial sequence Length = 8975 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 ggtgccgtcctgcaggaggccc 316 |||||||||||||||||||||| Sbjct: 2711 ggtgccgtcctgcaggaggccc 2690
>emb|BX294183.17| Mouse DNA sequence from clone RP24-388B10 on chromosome X, complete sequence Length = 184943 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 55 cctcttcctcctctctcctgttcagtcctc 84 ||||||||||||||||||| || ||||||| Sbjct: 162198 cctcttcctcctctctcctttttagtcctc 162227
>gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosome 17, complete sequence Length = 162175 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 68 tctcctgttcagtcctccctcg 89 |||||||||||||||||||||| Sbjct: 60120 tctcctgttcagtcctccctcg 60141
>dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, comP, comA, yuxO genes, partial and complete cds Length = 6114 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 109 ctcgcgggagctctcgcgccgc 130 |||||||||||||||||||||| Sbjct: 516 ctcgcgggagctctcgcgccgc 495
>dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, complete cds Length = 2517 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 109 ctcgcgggagctctcgcgccgc 130 |||||||||||||||||||||| Sbjct: 516 ctcgcgggagctctcgcgccgc 495
>ref|XM_472252.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1806 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cgccgccccgctccgccgccg 145 ||||||||||||||||||||| Sbjct: 180 cgccgccccgctccgccgccg 160
>gb|AE009089.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 115 of 256 of the complete sequence Length = 10144 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 318 cgtcttccacgacccgcagcttgatgcgc 346 |||||||| ||||| |||||||||||||| Sbjct: 1595 cgtcttccgcgacctgcagcttgatgcgc 1567
>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence Length = 187517 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 ccccgctccgccgccgttctc 150 ||||||||||||||||||||| Sbjct: 105985 ccccgctccgccgccgttctc 105965
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 ctgcaggaggcccgcgtcttc 324 ||||||||||||||||||||| Sbjct: 4382506 ctgcaggaggcccgcgtcttc 4382526
>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21, complete sequence Length = 143093 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cgccgccccgctccgccgccg 145 ||||||||||||||||||||| Sbjct: 6906 cgccgccccgctccgccgccg 6886
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 318 cgtcttccacgacccgcagcttgatgcgc 346 |||||||| ||||| |||||||||||||| Sbjct: 1257267 cgtcttccgcgacctgcagcttgatgcgc 1257239
>gb|AC090649.4| Genomic sequence for Mus musculus, clone RP23-361O12, complete sequence Length = 211611 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cctcttcctcctctctcctgt 75 ||||||||||||||||||||| Sbjct: 75898 cctcttcctcctctctcctgt 75878
>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10) Length = 98944 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 ccccgctccgccgccgttctc 150 ||||||||||||||||||||| Sbjct: 27526 ccccgctccgccgccgttctc 27506
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cgccgccccgctccgccgccg 145 ||||||||||||||||||||| Sbjct: 18790996 cgccgccccgctccgccgccg 18790976
>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21, complete sequence Length = 160456 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cgccgccccgctccgccgccg 145 ||||||||||||||||||||| Sbjct: 140159 cgccgccccgctccgccgccg 140139
>gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone BACR02G22, complete sequence Length = 164982 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 tcctcctctctcctgttcagtcctc 84 |||||||||||||||||| |||||| Sbjct: 69437 tcctcctctctcctgttctgtcctc 69413
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 151 gcggcatagcggtcgacccgggcgc 175 ||||||||||||||||| ||||||| Sbjct: 362798 gcggcatagcggtcgacgcgggcgc 362774
>gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18 of 118 of the complete sequence Length = 270517 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 tcctcctctctcctgttcagtcctc 84 |||||||||||||||||| |||||| Sbjct: 267285 tcctcctctctcctgttctgtcctc 267261
>ref|NM_187618.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2481 Score = 40.1 bits (20), Expect = 5.8 Identities = 47/56 (83%) Strand = Plus / Plus Query: 289 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 344 |||||||| ||||| ||||||||||| | | ||||| || |||||||||||||| Sbjct: 70 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 125
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 cgtcctgcaggaggcccgcg 319 |||||||||||||||||||| Sbjct: 506652 cgtcctgcaggaggcccgcg 506671
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 gctccgccgccgttctcgcggcat 157 |||||||||||| ||||||||||| Sbjct: 112345 gctccgccgccgctctcgcggcat 112322
>gb|AC133954.3| Mus musculus BAC clone RP23-154C17 from chromosome 5, complete sequence Length = 199991 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ctcttcctcctctctcctgt 75 |||||||||||||||||||| Sbjct: 135518 ctcttcctcctctctcctgt 135537
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.8 Identities = 47/56 (83%) Strand = Plus / Plus Query: 289 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 344 |||||||| ||||| ||||||||||| | | ||||| || |||||||||||||| Sbjct: 6646031 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 6646086
>gb|AC132100.3| Mus musculus BAC clone RP24-294D10 from chromosome 18, complete sequence Length = 173949 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cctcctctctcctgttcagt 80 |||||||||||||||||||| Sbjct: 96813 cctcctctctcctgttcagt 96832
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 atcgagaagggtgccgtcct 305 |||||||||||||||||||| Sbjct: 23174 atcgagaagggtgccgtcct 23155
>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05, complete sequence Length = 127946 Score = 40.1 bits (20), Expect = 5.8 Identities = 47/56 (83%) Strand = Plus / Plus Query: 289 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 344 |||||||| ||||| ||||||||||| | | ||||| || |||||||||||||| Sbjct: 31579 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 31634
>emb|CR848714.6| Wallaby DNA sequence from clone MEKBa-460J13, complete sequence Length = 186287 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 ctcttcctcctctctcctgt 75 |||||||||||||||||||| Sbjct: 156270 ctcttcctcctctctcctgt 156251
>gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete sequence Length = 36153 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcgcgccgccccgctccgcc 141 |||||||||||||||||||| Sbjct: 31314 tcgcgccgccccgctccgcc 31295
>gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide reductase (ahpC) gene, partial cds; CooM (cooM), CooK (cooK), CooL (cooL), CooX (cooX), CooU (cooU), CooH (cooH), iron sulfur protein (cooF), carbon monoxide dehydrogenase (cooS), CooC (cooC), CooT (cooT), CooJ (cooJ), putative transcriptional activator; similar to cAMP-receptor (CAP, CRP) protein: PIR Accession Number A26049; similar to fnr (nirR) gene product encoded by GenBank Accession Number J01608; aspartic acid-rich C-terminus similar to acidic region of HMG (high mobility group) protei (cooA), and nicotinate-nucleotide pyrophosphorylase (nadC) genes, complete cds; L-aspartate oxidase (nadB) gene, partial cds; and unknown gene Length = 16259 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gcgccgccccgctccgccgc 143 |||||||||||||||||||| Sbjct: 15846 gcgccgccccgctccgccgc 15827
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gcgccgccccgctccgccgc 143 |||||||||||||||||||| Sbjct: 1691662 gcgccgccccgctccgccgc 1691643
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 gctccgccgccgttctcgcggcat 157 |||||||||||| ||||||||||| Sbjct: 4460982 gctccgccgccgctctcgcggcat 4460959
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.8 Identities = 47/56 (83%) Strand = Plus / Plus Query: 289 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 344 |||||||| ||||| ||||||||||| | | ||||| || |||||||||||||| Sbjct: 6645244 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 6645299
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ttcctcggcatcgagaaggg 296 |||||||||||||||||||| Sbjct: 1659149 ttcctcggcatcgagaaggg 1659168
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 gccgccccgctccgccgccg 145 |||||||||||||||||||| Sbjct: 2744303 gccgccccgctccgccgccg 2744322
>gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete sequence Length = 112084 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ttcctcctctctcctgttca 78 |||||||||||||||||||| Sbjct: 47456 ttcctcctctctcctgttca 47475
>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0557D09 Length = 135315 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cttcctcctctctcctgttc 77 |||||||||||||||||||| Sbjct: 83807 cttcctcctctctcctgttc 83826
>ref|XM_316442.2| Anopheles gambiae str. PEST ENSANGP00000021115 (ENSANGG00000018626), partial mRNA Length = 1731 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cgacccgcagcttgatgcgc 346 |||||||||||||||||||| Sbjct: 931 cgacccgcagcttgatgcgc 912
>ref|XM_313144.2| Anopheles gambiae str. PEST ENSANGP00000013219 (ENSANGG00000010730), partial mRNA Length = 1333 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 atcgagaagggtgccgtcctgcag 309 ||||| |||||||||||||||||| Sbjct: 657 atcgataagggtgccgtcctgcag 634
>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full insert sequence Length = 3214 Score = 40.1 bits (20), Expect = 5.8 Identities = 47/56 (83%) Strand = Plus / Plus Query: 289 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 344 |||||||| ||||| ||||||||||| | | ||||| || |||||||||||||| Sbjct: 250 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 305
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 gctccgccgccgttctcgcggcat 157 |||||||||||| ||||||||||| Sbjct: 4469676 gctccgccgccgctctcgcggcat 4469653
>emb|AL590430.8| Mouse DNA sequence from clone RP23-384K10 on chromosome 2, complete sequence Length = 144909 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tcttcctcctctctcctgtt 76 |||||||||||||||||||| Sbjct: 38565 tcttcctcctctctcctgtt 38546
>emb|AL732513.8| Mouse DNA sequence from clone RP23-344B24 on chromosome 2, complete sequence Length = 209452 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gcctcttcctcctctctcct 73 |||||||||||||||||||| Sbjct: 54386 gcctcttcctcctctctcct 54405
>dbj|AB046872.1| Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds Length = 2207 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cgcctcttcctcctctctcc 72 |||||||||||||||||||| Sbjct: 918 cgcctcttcctcctctctcc 899
>dbj|AB059356.1| Physcomitrella patens Sig2 gene for PpSIG2, complete cds Length = 3439 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cgcctcttcctcctctctcc 72 |||||||||||||||||||| Sbjct: 1427 cgcctcttcctcctctctcc 1408 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,005,002 Number of Sequences: 3902068 Number of extensions: 3005002 Number of successful extensions: 78193 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 77394 Number of HSP's gapped (non-prelim): 799 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
