ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY532594.1| Triticum aestivum minichromosomal maintenance fac... 488 e-135
2gb|AY532593.1| Triticum aestivum minichromosomal maintenance fac... 440 e-120
3dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 1e-46
4gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome... 188 8e-45
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 188 8e-45
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 188 8e-45
7gb|BT015953.1| Drosophila melanogaster SD09647 full insert cDNA 42 1.1
8gb|BT025193.1| Drosophila melanogaster FI01127 full insert cDNA 42 1.1
9ref|XM_883457.1| Leishmania major strain Friedlin hypothetical p... 42 1.1
10emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 42 1.1
11gb|AY861166.1| Cottus gobio microsatellite Cott105 sequence 42 1.1
12emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.1
13gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell... 42 1.1
14ref|NM_132004.2| Drosophila melanogaster CG4136-RA (CG4136), mRNA 42 1.1
15gb|AY070708.1| Drosophila melanogaster SD01032 full length cDNA 42 1.1
16gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.1
17emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; c... 42 1.1
18ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA 42 1.1
19gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 ... 42 1.1
20dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 1.1
21ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains... 40 4.4
22ref|NM_193891.1| Oryza sativa (japonica cultivar-group), predic... 40 4.4
23ref|NM_189357.1| Oryza sativa (japonica cultivar-group), predic... 40 4.4
24gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
25gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
26gb|AY641547.1| Halomonas maura nitrate-reductase operon, complet... 40 4.4
27gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
28gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 4.4
29ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM048... 40 4.4
30gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosom... 40 4.4
31ref|XM_380438.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 4.4
32ref|XM_858301.1| PREDICTED: Canis familiaris similar to Retinobl... 40 4.4
33ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinobl... 40 4.4
34ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predi... 40 4.4
35ref|XM_785070.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.4
36emb|BX011524.1|CNS08H20 Single read from an extremity of a full-... 40 4.4
37dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
38dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
39dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
41dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
42dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
43ref|XM_222159.3| PREDICTED: Rattus norvegicus zinc finger, CCHC ... 40 4.4
44gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.4
45dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 4.4
46dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
47dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
48dbj|AK105946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
49emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chr... 40 4.4
50gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
51emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 4.4 
>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA,
           complete cds
          Length = 2923

 Score =  488 bits (246), Expect = e-135
 Identities = 274/282 (97%), Gaps = 1/282 (0%)
 Strand = Plus / Plus

                                                                       
Query: 50  cacgcctcctccacaggacccttctcggagcccgcggatggacgactcggagaacaacgc 109
           ||||| |||||||||||| ||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 4   cacgcgtcctccacaggagcctcctccga-cccgcggatggacgactcggagaacaacgc 62

                                                                       
Query: 110 gccgtcgaccccgggctcgccgggtttcagcaccgaccggctgccgcccaacaccaccac 169
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 63  gccgtcgaccccgggctcgccgggcttcagcaccgaccggctgccgcccaacaccaccac 122

                                                                       
Query: 170 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 182

                                                                       
Query: 230 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 242

                                                     
Query: 290 cggggaagacctcttcaacgacgactacctcaatgattaccg 331
            ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 243 tggggaggacctcttcaacgacgactacctcaatgattaccg 284
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>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene,
            exons 1 through 18 and complete sequence
          Length = 8809

 Score =  440 bits (222), Expect = e-120
 Identities = 231/234 (98%)
 Strand = Plus / Plus

                                                                        
Query: 89   ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccg 148
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2395 ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggcttcagcaccgaccg 2454

                                                                        
Query: 149  gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2455 gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 2514

                                                                        
Query: 209  cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 2574

                                                                  
Query: 269  ccgcgacgaggaggaagacgacggggaagacctcttcaacgacgactacctcaa 322
            ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 2575 ccgcgacgaggaggaagacgatggggaggacctcttcaacgacgactacctcaa 2628



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                        
Query: 7    attccccccttcccgccgaaaccctagcctcatctcgccaccgcacgcctcctccacagg 66
            |||||||||||||||||||||||||||||||  | | |  || ||||| |||||||||||
Sbjct: 2199 attccccccttcccgccgaaaccctagcctcggcgcacagccacacgcgtcctccacagg 2258

                                    
Query: 67   acccttctcggagcccgcggatgg 90
            | ||| ||| || |||||||||||
Sbjct: 2259 agcctcctccgaccccgcggatgg 2282
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>dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full
           insert sequence
          Length = 3214

 Score =  194 bits (98), Expect = 1e-46
 Identities = 119/126 (94%)
 Strand = Plus / Plus

                                                                       
Query: 86  gatggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccga 145
           |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 83  gatggatgactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacaga 142

                                                                       
Query: 146 ccggctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 205
           | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 caggctgccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 202

                 
Query: 206 cgacga 211
           ||||||
Sbjct: 203 cgacga 208



 Score =  105 bits (53), Expect = 9e-20
 Identities = 102/117 (87%), Gaps = 6/117 (5%)
 Strand = Plus / Plus

                                                                       
Query: 216 gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 275
           |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 234 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 287

                                                                    
Query: 276 gaggaggaagacgacggggaagacctcttcaacgacgactacctcaatgattaccgg 332
           |||||||| || |||||||| ||||||||||||||| |||||||| |||||||||||
Sbjct: 288 gaggaggaggaggacggggaggacctcttcaacgacaactacctcgatgattaccgg 344
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>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057E15, complete sequence
          Length = 149035

 Score =  188 bits (95), Expect = 8e-45
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                         
Query: 93    gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 152
             |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 97266 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 97325

                                                                        
Query: 153   ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 211
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97326 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 97384



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                         
Query: 216   gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 275
             |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 97410 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 97463

                                                          
Query: 276   gaggaggaagacgacggggaagacctcttcaacgacgactacctc 320
             |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 97464 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 97508
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  188 bits (95), Expect = 8e-45
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 93       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 152
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16456667 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16456726

                                                                           
Query: 153      ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 211
                ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16456727 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16456785



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 216      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 275
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16456811 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16456864

                                                             
Query: 276      gaggaggaagacgacggggaagacctcttcaacgacgactacctc 320
                |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 16456865 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16456909
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  188 bits (95), Expect = 8e-45
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 93       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 152
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16547671 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16547730

                                                                           
Query: 153      ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 211
                ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16547731 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16547789



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 216      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 275
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16547815 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16547868

                                                             
Query: 276      gaggaggaagacgacggggaagacctcttcaacgacgactacctc 320
                |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 16547869 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16547913
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>gb|BT015953.1| Drosophila melanogaster SD09647 full insert cDNA
          Length = 2972

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 170  cagccgcggcgccaccgacccgtcctcct 198
            ||||| ||||||||||||| |||||||||
Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724
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>gb|BT025193.1| Drosophila melanogaster FI01127 full insert cDNA
          Length = 2971

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 170  cagccgcggcgccaccgacccgtcctcct 198
            ||||| ||||||||||||| |||||||||
Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724
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>ref|XM_883457.1| Leishmania major strain Friedlin hypothetical protein (P1105.02)
           partial mRNA
          Length = 507

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 199 actcggacgacgatggcgagg 219
           |||||||||||||||||||||
Sbjct: 479 actcggacgacgatggcgagg 499
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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 199   actcggacgacgatggcgagg 219
             |||||||||||||||||||||
Sbjct: 28850 actcggacgacgatggcgagg 28830
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>gb|AY861166.1| Cottus gobio microsatellite Cott105 sequence
          Length = 711

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 271 gcgacgaggaggaagacgacggggaagac 299
           ||||||||||||||||||| | |||||||
Sbjct: 297 gcgacgaggaggaagacgaggaggaagac 269
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 206     cgacgatggcgaggcggaggt 226
               |||||||||||||||||||||
Sbjct: 1468047 cgacgatggcgaggcggaggt 1468027
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>gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 163764

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 170   cagccgcggcgccaccgacccgtcctcct 198
             ||||| ||||||||||||| |||||||||
Sbjct: 58418 cagccacggcgccaccgactcgtcctcct 58390
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>ref|NM_132004.2| Drosophila melanogaster CG4136-RA (CG4136), mRNA
          Length = 2983

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 170  cagccgcggcgccaccgacccgtcctcct 198
            ||||| ||||||||||||| |||||||||
Sbjct: 1765 cagccacggcgccaccgactcgtcctcct 1737
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>gb|AY070708.1| Drosophila melanogaster SD01032 full length cDNA
          Length = 2647

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 170  cagccgcggcgccaccgacccgtcctcct 198
            ||||| ||||||||||||| |||||||||
Sbjct: 1429 cagccacggcgccaccgactcgtcctcct 1401
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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 276    gaggaggaagacgacggggaa 296
              |||||||||||||||||||||
Sbjct: 909354 gaggaggaagacgacggggaa 909334
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>emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; clone MWG0904.rev
          Length = 416

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 161 caccaccaccagccgcggcgccacc 185
           |||||||||||||| ||||||||||
Sbjct: 305 caccaccaccagccacggcgccacc 281
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>ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA
          Length = 2085

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 276 gaggaggaagacgacggggaa 296
           |||||||||||||||||||||
Sbjct: 154 gaggaggaagacgacggggaa 174
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>gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 of 74 of the complete
              sequence
          Length = 303928

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 170    cagccgcggcgccaccgacccgtcctcct 198
              ||||| ||||||||||||| |||||||||
Sbjct: 287799 cagccacggcgccaccgactcgtcctcct 287771
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>dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23A02, TM0306,
             complete sequence
          Length = 62713

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 14    ccttcccgccgaaaccctagcctca 38
             |||||||| ||||||||||||||||
Sbjct: 47783 ccttcccgtcgaaaccctagcctca 47807
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>ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains similarity to
           gypsy-type retrotransposon (OSJNBa0012D19.23), mRNA
          Length = 1998

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 276 gaggaggaagacgacgggga 295
           ||||||||||||||||||||
Sbjct: 868 gaggaggaagacgacgggga 887
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>ref|NM_193891.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 960

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 cgacgaggaggaagacgacg 291
           ||||||||||||||||||||
Sbjct: 636 cgacgaggaggaagacgacg 655
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>ref|NM_189357.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 cgccaccgacccgtcctcct 198
           ||||||||||||||||||||
Sbjct: 843 cgccaccgacccgtcctcct 824
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>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0012D19,
              complete sequence
          Length = 153276

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    gaggaggaagacgacgggga 295
              ||||||||||||||||||||
Sbjct: 121853 gaggaggaagacgacgggga 121872
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>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
              complete sequence
          Length = 115026

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    cgacgaggaggaagacgacg 291
              ||||||||||||||||||||
Sbjct: 107836 cgacgaggaggaagacgacg 107817
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>gb|AY641547.1| Halomonas maura nitrate-reductase operon, complete sequence
          Length = 8823

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  cgaggacgacggcgccaccg 264
            ||||||||||||||||||||
Sbjct: 3486 cgaggacgacggcgccaccg 3505
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>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12,
             complete sequence
          Length = 119909

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   cgacgaggaggaagacgacg 291
             ||||||||||||||||||||
Sbjct: 22028 cgacgaggaggaagacgacg 22009
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    acaccaccaccagccgcggc 179
              ||||||||||||||||||||
Sbjct: 653840 acaccaccaccagccgcggc 653821
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>ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM04809.1) partial mRNA
          Length = 1827

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 272 cgacgaggaggaagacgacggggaagac 299
           |||||| ||||||||||||| |||||||
Sbjct: 864 cgacgacgaggaagacgacgaggaagac 891
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>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete sequence
          Length = 177226

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ctcctccacaggacccttct 74
             ||||||||||||||||||||
Sbjct: 72162 ctcctccacaggacccttct 72181
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>ref|XM_380438.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00262.1)
           partial mRNA
          Length = 1035

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 cgacgaggaggaagacgacg 291
           ||||||||||||||||||||
Sbjct: 402 cgacgaggaggaagacgacg 421
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>ref|XM_858301.1| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein
           2 (130 kDa retinoblastoma-associated protein) (PRB2)
           (P130) (RBR-2), transcript variant 3 (LOC478127), mRNA
          Length = 2389

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 276 gaggaggaagacgacgggga 295
           ||||||||||||||||||||
Sbjct: 153 gaggaggaagacgacgggga 172
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>ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein
           2 (130 kDa retinoblastoma-associated protein) (PRB2)
           (P130) (RBR-2), transcript variant 1 (LOC478127), mRNA
          Length = 4080

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 276 gaggaggaagacgacgggga 295
           ||||||||||||||||||||
Sbjct: 153 gaggaggaagacgacgggga 172
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>ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predicted mRNA
          Length = 1260

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 276  gaggaggaagacgacggggaagac 299
            |||||||||||||||| |||||||
Sbjct: 1108 gaggaggaagacgacgaggaagac 1131
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>ref|XM_785070.1| PREDICTED: Strongylocentrotus purpuratus similar to Hypothetical
            UPF0120 protein DKFZp564C186 homolog (LOC585237), mRNA
          Length = 2835

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 284  agacgacggggaagacctcttcaa 307
            |||||||| |||||||||||||||
Sbjct: 2055 agacgacgaggaagacctcttcaa 2078
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>emb|BX011524.1|CNS08H20 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA18BG03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 927

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 272 cgacgaggaggaagacgacggggaagac 299
           ||||||||||| | ||||||||||||||
Sbjct: 795 cgacgaggagggaaacgacggggaagac 768
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 276      gaggaggaagacgacgggga 295
                ||||||||||||||||||||
Sbjct: 15063234 gaggaggaagacgacgggga 15063253
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 272      cgacgaggaggaagacgacg 291
                ||||||||||||||||||||
Sbjct: 22276608 cgacgaggaggaagacgacg 22276589
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 272      cgacgaggaggaagacgacg 291
                ||||||||||||||||||||
Sbjct: 26869596 cgacgaggaggaagacgacg 26869577
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 179      cgccaccgacccgtcctcct 198
                ||||||||||||||||||||
Sbjct: 42357219 cgccaccgacccgtcctcct 42357238



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 272      cgacgaggaggaagacgacg 291
                ||||||||||||||||||||
Sbjct: 15675773 cgacgaggaggaagacgacg 15675792
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>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0401G10
          Length = 160704

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    cgccaccgacccgtcctcct 198
              ||||||||||||||||||||
Sbjct: 129176 cgccaccgacccgtcctcct 129195
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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   cgccaccgacccgtcctcct 198
             ||||||||||||||||||||
Sbjct: 16557 cgccaccgacccgtcctcct 16576
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>ref|XM_222159.3| PREDICTED: Rattus norvegicus zinc finger, CCHC domain containing 8
           (predicted) (Zcchc8_predicted), mRNA
          Length = 2675

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 cgacgaggaggaagacgacg 291
           ||||||||||||||||||||
Sbjct: 162 cgacgaggaggaagacgacg 181
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 167     caccagccgcggcgccaccgacccgtcc 194
               ||||||||||| |||||||||| |||||
Sbjct: 2859792 caccagccgcgccgccaccgacgcgtcc 2859819



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     caccaccaccagccgcggcg 180
               ||||||||||||||||||||
Sbjct: 1645167 caccaccaccagccgcggcg 1645186
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 81      ccgcggatggacgactcgga 100
               ||||||||||||||||||||
Sbjct: 2043809 ccgcggatggacgactcgga 2043828
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>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0566A10
          Length = 174367

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   cgacgaggaggaagacgacg 291
             ||||||||||||||||||||
Sbjct: 55031 cgacgaggaggaagacgacg 55012
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>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0416G11
          Length = 138858

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    cgacgaggaggaagacgacg 291
              ||||||||||||||||||||
Sbjct: 113670 cgacgaggaggaagacgacg 113689
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>dbj|AK105946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C05, full
           insert sequence
          Length = 1367

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 cgacgaggaggaagacgacg 291
           ||||||||||||||||||||
Sbjct: 978 cgacgaggaggaagacgacg 997
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>emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chromosome 8, complete
              sequence
          Length = 183975

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     ctcctccacaggacccttct 74
              ||||||||||||||||||||
Sbjct: 181578 ctcctccacaggacccttct 181597
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 276      gaggaggaagacgacgggga 295
                ||||||||||||||||||||
Sbjct: 15071475 gaggaggaagacgacgggga 15071494
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 276     gaggaggaagacgacggggaagac 299
               |||||||||||||||| |||||||
Sbjct: 3903697 gaggaggaagacgacgaggaagac 3903674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,434,909
Number of Sequences: 3902068
Number of extensions: 2434909
Number of successful extensions: 59634
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58827
Number of HSP's gapped (non-prelim): 806
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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