ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33d04 |
|---|---|
| Clone Library Name | barley_pub |
>GLYA2_RHORT (Q2RTB8) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine| methylase 2) (SHMT 2) Length = 430 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +3 Query: 264 GCPLAAAGHVTHEAPPPQA 320 G LAA GH+TH APP Q+ Sbjct: 125 GMSLAAGGHLTHGAPPAQS 143
>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) Length = 559 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/20 (65%), Positives = 13/20 (65%) Frame = +3 Query: 270 PLAAAGHVTHEAPPPQAPPL 329 PL A V H APPP APPL Sbjct: 374 PLQIAPGVLHPAPPPIAPPL 393
>WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) (Verprolin homology domain-containing protein 1) Length = 559 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/20 (65%), Positives = 13/20 (65%) Frame = +3 Query: 270 PLAAAGHVTHEAPPPQAPPL 329 PL A V H APPP APPL Sbjct: 374 PLQIAPGVLHPAPPPIAPPL 393
>XBP1_YEAST (P40489) Transcriptional repressor XBP1 (XhoI site-binding protein| 1) Length = 647 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Frame = -2 Query: 152 TYS*IHPIAGYYSSPR--NILSRPVA 81 TY IHP+ Y SPR N+ S P+A Sbjct: 559 TYDHIHPVPSQYQSPRHYNVPSSPIA 584
>CAIT_SHIFL (P59335) L-carnitine/gamma-butyrobetaine antiporter| Length = 504 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 109 HEIFYRAQLPWAIYSLLRFAFA 44 + +F+ LPWA YS L AFA Sbjct: 137 YSLFHWGPLPWATYSFLSVAFA 158
>CAIT_PROSL (P59334) L-carnitine/gamma-butyrobetaine antiporter| Length = 504 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 109 HEIFYRAQLPWAIYSLLRFAFA 44 + +F+ LPWA YS L AFA Sbjct: 137 YSLFHWGPLPWATYSFLSVAFA 158
>CAIT_ECOLI (P31553) L-carnitine/gamma-butyrobetaine antiporter| Length = 504 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 109 HEIFYRAQLPWAIYSLLRFAFA 44 + +F+ LPWA YS L AFA Sbjct: 137 YSLFHWGPLPWATYSFLSVAFA 158
>CAIT_ECOL6 (P59333) L-carnitine/gamma-butyrobetaine antiporter| Length = 504 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 109 HEIFYRAQLPWAIYSLLRFAFA 44 + +F+ LPWA YS L AFA Sbjct: 137 YSLFHWGPLPWATYSFLSVAFA 158
>GLYA_METEX (P50435) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 434 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +3 Query: 264 GCPLAAAGHVTHEAPP 311 G LAA GH+TH APP Sbjct: 130 GLDLAAGGHLTHGAPP 145
>Y123_PYRAB (Q9V2F1) Hypothetical protein PYRAB01230| Length = 257 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -3 Query: 115 PPHEIFYRAQLPWAIYSL 62 PPHE+ YRA + WA+Y L Sbjct: 58 PPHEVPYRANI-WALYEL 74
>TBCD1_HUMAN (Q86TI0) TBC1 domain family member 1| Length = 1168 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -3 Query: 136 IQLRGTIPPHEIFYRAQLPWAIYSLLRFAFASSR 35 +QL G++P H + LPW + + R + S+R Sbjct: 23 LQLVGSLPVHSLTTMPMLPWVVAEVRRLSRQSTR 56
>CAIT_SALTY (Q8ZRX1) L-carnitine/gamma-butyrobetaine antiporter| Length = 505 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 109 HEIFYRAQLPWAIYSLLRFAFA 44 + +F+ LPWA YS L AFA Sbjct: 137 YSLFHWGPLPWATYSFLSVAFA 158
>CAIT_SALTI (Q8Z9L1) L-carnitine/gamma-butyrobetaine antiporter| Length = 505 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 109 HEIFYRAQLPWAIYSLLRFAFA 44 + +F+ LPWA YS L AFA Sbjct: 137 YSLFHWGPLPWATYSFLSVAFA 158
>SORT_RAT (O54861) Sortilin precursor (Neurotensin receptor 3) (NTR3)| (Glycoprotein 110) (Gp110) Length = 825 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +3 Query: 270 PLAAAGHVTHEAPPPQAPPL 329 P AA G +APPP APPL Sbjct: 26 PPAAVGQDRLDAPPPPAPPL 45
>SORT_MOUSE (Q6PHU5) Sortilin precursor (Neurotensin receptor 3) (NTR3) (mNTR3)| Length = 825 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +3 Query: 270 PLAAAGHVTHEAPPPQAPPL 329 P AA G +APPP APPL Sbjct: 26 PPAAVGQDRLDAPPPPAPPL 45
>NIA1_ORYSA (P16081) Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)| Length = 916 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +3 Query: 252 PRRAGCPLAAAGHVTHEAPPPQAPP 326 PRRA P+ G +PPP+ PP Sbjct: 39 PRRADSPVRGCGFPPLVSPPPRKPP 63
>HME1_MOUSE (P09065) Homeobox protein engrailed-1 (Mo-En-1)| Length = 401 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = +3 Query: 240 APRNPRRAGC--PLAAAGHVTHEAPPPQAPP 326 AP +P A C PLA H+ PPP PP Sbjct: 53 APPSPPAAPCLPPLAHHPHLPPHPPPPPPPP 83
>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein of the| cerebellum 5) Length = 639 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%) Frame = +3 Query: 261 AGCPLAAAG---HVTHEAPPPQAPP 326 A AAAG H+ H APPP PP Sbjct: 314 AAAAAAAAGPGPHLQHHAPPPAPPP 338
>LOXL4_BOVIN (Q8MJ24) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl| oxidase-like protein 4) Length = 757 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%) Frame = -1 Query: 135 SNCGVLFLPTKYSIAPSCPG---RYIRCFASP--SPPRGEASK 22 +NC V P + + P+CPG + C A P PP+ + + Sbjct: 260 ANCQVQVAPAQGKLRPACPGGMHAVVSCVAGPRFRPPKAKPGR 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,557,692 Number of Sequences: 219361 Number of extensions: 549614 Number of successful extensions: 2026 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1947 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2022 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
