ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC118284.3| Oryza sativa (japonica cultivar-group) chromosome... 64 5e-07
2gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome... 64 5e-07
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
4dbj|AK100082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
5ref|NM_191155.1| Oryza sativa (japonica cultivar-group), predic... 50 0.007
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
7dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
8dbj|AK120741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
9dbj|AK119360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
10dbj|AK109885.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
11gb|AE005884.1| Caulobacter crescentus CB15 section 210 of 359 of... 46 0.11
12ref|XM_473909.1| Oryza sativa (japonica cultivar-group), predic... 44 0.42
13emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4,... 44 0.42
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
15dbj|AK120799.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.42
16emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.42
17ref|XM_483028.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
18ref|XM_544782.2| PREDICTED: Canis familiaris similar to SH3 and ... 42 1.7
19gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete... 42 1.7
20emb|CR859024.1| Pongo pygmaeus mRNA; cDNA DKFZp469A1713 (from cl... 42 1.7
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
22dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
23emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 1.7
24emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in... 42 1.7
25dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.7
26gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 6.5
27gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 6.5
28ref|XM_482999.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
29ref|XM_477741.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
30gb|AY020385.1| Oryza sativa microsatellite MRG2710 containing (G... 40 6.5
31gb|AY657614.1| Synthetic construct Peudomonas aeruginosa clone F... 40 6.5
32gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 6.5
33emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.5
34emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 6.5
35emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete ... 40 6.5
36gb|AF232941.1| Bordetella bronchiseptica strain SB283 flagellin ... 40 6.5
37gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 6.5
38gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.5
39dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
40gb|AE004450.1| Pseudomonas aeruginosa PAO1, section 11 of 529 of... 40 6.5
41dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
42dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
43dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.5
44dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
45dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
46dbj|AK119491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
47dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
48gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 6.5
49emb|X86780.1|SHGCPIR S.hygroscopicus gene cluster for polyketide... 40 6.5
50gb|AC140337.3| Mus musculus BAC clone RP23-238H7 from 1, complet... 40 6.5
51gb|L13034.1|BPEFLAGEL Bordetella bronchiseptica flagellin (flaA)... 40 6.5 
>gb|AC118284.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1087_C03,
             complete sequence
          Length = 101218

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 335   ccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggct 386
             |||||||||||||| | ||  ||||| |||||||||||||||||||||||||
Sbjct: 96470 ccctccccaacgtcgcggtcgccggcgccgtccccgacgccatcggcgggct 96419



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 192   cgacgagcggcagctcctgctcaggatcaagagcgcgtggggcgacccggcggggctcgc 251
             |||||||  |||||||||||||  | ||||| |||||||||| ||||| |||| ||||||
Sbjct: 96613 cgacgagaagcagctcctgctccaggtcaagcgcgcgtggggggaccccgcggcgctcgc 96554

                    
Query: 252   gtcgtgg 258
             |||||||
Sbjct: 96553 gtcgtgg 96547
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>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0075A10, complete sequence
          Length = 171101

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 335   ccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggct 386
             |||||||||||||| | ||  ||||| |||||||||||||||||||||||||
Sbjct: 59118 ccctccccaacgtcgcggtcgccggcgccgtccccgacgccatcggcgggct 59067



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 192   cgacgagcggcagctcctgctcaggatcaagagcgcgtggggcgacccggcggggctcgc 251
             |||||||  |||||||||||||  | ||||| |||||||||| ||||| |||| ||||||
Sbjct: 59261 cgacgagaagcagctcctgctccaggtcaagcgcgcgtggggggaccccgcggcgctcgc 59202

                    
Query: 252   gtcgtgg 258
             |||||||
Sbjct: 59201 gtcgtgg 59195
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 335      ccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggct 386
                |||||||||||||| | ||  ||||| |||||||||||||||||||||||||
Sbjct: 25825176 ccctccccaacgtcgcggtcgccggcgccgtccccgacgccatcggcgggct 25825125



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                            
Query: 192      cgacgagcggcagctcctgctcaggatcaagagcgcgtggggcgacccggcggggctcgc 251
                |||||||  |||||||||||||  | ||||| |||||||||| ||||| |||| ||||||
Sbjct: 25825319 cgacgagaagcagctcctgctccaggtcaagcgcgcgtggggggaccccgcggcgctcgc 25825260

                       
Query: 252      gtcgtgg 258
                |||||||
Sbjct: 25825259 gtcgtgg 25825253
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>dbj|AK100082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002E24, full
           insert sequence
          Length = 3293

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 335 ccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggct 386
           |||||||||||||| | ||  ||||| |||||||||||||||||||||||||
Sbjct: 323 ccctccccaacgtcgcggtcgccggcgccgtccccgacgccatcggcgggct 374



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 192 cgacgagcggcagctcctgctcaggatcaagagcgcgtggggcgacccggcggggctcgc 251
           |||||||  |||||||||||||  | ||||| |||||||||| ||||| |||| ||||||
Sbjct: 180 cgacgagaagcagctcctgctccaggtcaagcgcgcgtggggggaccccgcggcgctcgc 239

                  
Query: 252 gtcgtgg 258
           |||||||
Sbjct: 240 gtcgtgg 246
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>ref|NM_191155.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3192

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 216 gatcaagagcgcgtggggcgacccggcggggctcgcg 252
           ||||||| ||||||||||||||||||| | |||||||
Sbjct: 120 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 156



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 330 cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 389
           |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 237 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 296

                   
Query: 390 cagcctcg 397
           ||||||||
Sbjct: 297 cagcctcg 304
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 216      gatcaagagcgcgtggggcgacccggcggggctcgcg 252
                ||||||| ||||||||||||||||||| | |||||||
Sbjct: 30999484 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 30999520



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 330      cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 389
                |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 30999601 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 30999660

                        
Query: 390      cagcctcg 397
                ||||||||
Sbjct: 30999661 cagcctcg 30999668
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>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0439E07
          Length = 176486

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 216   gatcaagagcgcgtggggcgacccggcggggctcgcg 252
             ||||||| ||||||||||||||||||| | |||||||
Sbjct: 56463 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 56499



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 330   cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 389
             |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 56580 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 56639

                     
Query: 390   cagcctcg 397
             ||||||||
Sbjct: 56640 cagcctcg 56647
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>dbj|AK120741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003P18, full
           insert sequence
          Length = 3613

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 216 gatcaagagcgcgtggggcgacccggcggggctcgcg 252
           ||||||| ||||||||||||||||||| | |||||||
Sbjct: 199 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 235



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 330 cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 389
           |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 316 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 375

                   
Query: 390 cagcctcg 397
           ||||||||
Sbjct: 376 cagcctcg 383
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>dbj|AK119360.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G06, full
           insert sequence
          Length = 2885

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 216 gatcaagagcgcgtggggcgacccggcggggctcgcg 252
           ||||||| ||||||||||||||||||| | |||||||
Sbjct: 201 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 237



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 330 cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 389
           |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 318 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 377

                   
Query: 390 cagcctcg 397
           ||||||||
Sbjct: 378 cagcctcg 385
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>dbj|AK109885.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D10, full
           insert sequence
          Length = 1500

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 216 gatcaagagcgcgtggggcgacccggcggggctcgcg 252
           ||||||| ||||||||||||||||||| | |||||||
Sbjct: 197 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 233



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 330 cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 389
           |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 314 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 373

                   
Query: 390 cagcctcg 397
           ||||||||
Sbjct: 374 cagcctcg 381
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>gb|AE005884.1| Caulobacter crescentus CB15 section 210 of 359 of the complete
           genome
          Length = 10029

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 244 gggctcgcgtcgtggtcggcggccacc 270
           ||||||||| |||||||||||||||||
Sbjct: 107 gggctcgcggcgtggtcggcggccacc 133
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>ref|XM_473909.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3525

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 297 cgtctcctgcgacggcgccggccgggtgac 326
           |||| |||||||||||||||||| ||||||
Sbjct: 246 cgtcgcctgcgacggcgccggccaggtgac 275
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>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
             complete sequence
          Length = 164805

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 297   cgtctcctgcgacggcgccggccgggtgac 326
             |||| |||||||||||||||||| ||||||
Sbjct: 36420 cgtcgcctgcgacggcgccggccaggtgac 36391
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 297      cgtctcctgcgacggcgccggccgggtgac 326
                |||| |||||||||||||||||| ||||||
Sbjct: 31458737 cgtcgcctgcgacggcgccggccaggtgac 31458708
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>dbj|AK120799.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012H18, full
           insert sequence
          Length = 3973

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 297 cgtctcctgcgacggcgccggccgggtgac 326
           |||| |||||||||||||||||| ||||||
Sbjct: 283 cgtcgcctgcgacggcgccggccaggtgac 312
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>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete
             sequence
          Length = 131195

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 297   cgtctcctgcgacggcgccggccgggtgac 326
             |||| |||||||||||||||||| ||||||
Sbjct: 78573 cgtcgcctgcgacggcgccggccaggtgac 78544
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>ref|XM_483028.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 948

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 258 gtcggcggccacctcctcgcactgc 282
           |||||||||||||||||| ||||||
Sbjct: 192 gtcggcggccacctcctcccactgc 168
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>ref|XM_544782.2| PREDICTED: Canis familiaris similar to SH3 and PX domain containing 3
            (LOC487657), mRNA
          Length = 1812

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 155  tctgcctcgtcctgcgccatg 175
            |||||||||||||||||||||
Sbjct: 1544 tctgcctcgtcctgcgccatg 1524
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>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence
          Length = 452156

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 275    cgcactgcgccggctgggccc 295
              |||||||||||||||||||||
Sbjct: 243156 cgcactgcgccggctgggccc 243136
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>emb|CR859024.1| Pongo pygmaeus mRNA; cDNA DKFZp469A1713 (from clone DKFZp469A1713)
          Length = 4361

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 155  tctgcctcgtcctgcgccatg 175
            |||||||||||||||||||||
Sbjct: 2740 tctgcctcgtcctgcgccatg 2720
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 258      gtcggcggccacctcctcgcactgc 282
                |||||||||||||||||| ||||||
Sbjct: 23944717 gtcggcggccacctcctcccactgc 23944693



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 325      acctccctcgccctccccaacgtc 348
                ||||||||||||||||||| ||||
Sbjct: 23811985 acctccctcgccctccccagcgtc 23811962



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 157      tgcctcgtcctgcgccatggcgcg 180
                ||||||||||| ||||||||||||
Sbjct: 19638213 tgcctcgtcctccgccatggcgcg 19638236



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    gtcggcggccacctcctcgc 277
              ||||||||||||||||||||
Sbjct: 370363 gtcggcggccacctcctcgc 370344
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>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0419H09
          Length = 143533

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 258   gtcggcggccacctcctcgcactgc 282
             |||||||||||||||||| ||||||
Sbjct: 77868 gtcggcggccacctcctcccactgc 77844
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 305     gcgacggcgccggccgggtga 325
               |||||||||||||||||||||
Sbjct: 5724472 gcgacggcgccggccgggtga 5724452
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>emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in linkage group 10,
              complete sequence
          Length = 188280

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    acgcctttctcccactcctcg 151
              |||||||||||||||||||||
Sbjct: 173186 acgcctttctcccactcctcg 173166
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 186     gcaggccgacgagcggcagctcctg 210
               |||||||| ||||||||||||||||
Sbjct: 2940140 gcaggccggcgagcggcagctcctg 2940164
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 169     cgccatggcgcggcgcagcaggcc 192
               |||||||||||||||| |||||||
Sbjct: 1657075 cgccatggcgcggcgcggcaggcc 1657098



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    ccatggcgcggcgcagcagg 190
              ||||||||||||||||||||
Sbjct: 681129 ccatggcgcggcgcagcagg 681110
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     ccatggcgcggcgcagcagg 190
               ||||||||||||||||||||
Sbjct: 2236615 ccatggcgcggcgcagcagg 2236596
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>ref|XM_482999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1101

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 325 acctccctcgccctccccaacgtc 348
           ||||||||||||||||||| ||||
Sbjct: 529 acctccctcgccctccccagcgtc 506
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>ref|XM_477741.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 624

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 333 cgccctccccaacgtcaccgtgtccggc 360
           ||||||| |||||||||||||| |||||
Sbjct: 252 cgccctcgccaacgtcaccgtgcccggc 279
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>gb|AY020385.1| Oryza sativa microsatellite MRG2710 containing (GA)X15, closest to
           marker R1943, genomic sequence
          Length = 230

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 gtcggcggccacctcctcgc 277
           ||||||||||||||||||||
Sbjct: 201 gtcggcggccacctcctcgc 182
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>gb|AY657614.1| Synthetic construct Peudomonas aeruginosa clone FLH041231.01F
           PA0126 gene, partial cds
          Length = 621

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 177 cgcggcgcagcaggccgacg 196
           ||||||||||||||||||||
Sbjct: 256 cgcggcgcagcaggccgacg 237
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 177     cgcggcgcagcaggccgacg 196
               ||||||||||||||||||||
Sbjct: 2137395 cgcggcgcagcaggccgacg 2137376
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    ccaacgtcaccgtgtccggc 360
              ||||||||||||||||||||
Sbjct: 266019 ccaacgtcaccgtgtccggc 266000
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    ccaacgtcaccgtgtccggc 360
              ||||||||||||||||||||
Sbjct: 178362 ccaacgtcaccgtgtccggc 178343
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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 251  cgtcgtggtcggcggccacc 270
            ||||||||||||||||||||
Sbjct: 3635 cgtcgtggtcggcggccacc 3654
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>gb|AF232941.1| Bordetella bronchiseptica strain SB283 flagellin gene, partial cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 ccaacgtcaccgtgtccggc 360
           ||||||||||||||||||||
Sbjct: 818 ccaacgtcaccgtgtccggc 837
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 252    gtcgtggtcggcggccacctcctc 275
              |||||||| |||||||||||||||
Sbjct: 578895 gtcgtggtaggcggccacctcctc 578918
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     agcaggccgacgagcggcag 204
               ||||||||||||||||||||
Sbjct: 4768336 agcaggccgacgagcggcag 4768317
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 333      cgccctccccaacgtcaccgtgtccggc 360
                ||||||| |||||||||||||| |||||
Sbjct: 13628209 cgccctcgccaacgtcaccgtgcccggc 13628182
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>gb|AE004450.1| Pseudomonas aeruginosa PAO1, section 11 of 529 of the complete genome
          Length = 11085

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  cgcggcgcagcaggccgacg 196
            ||||||||||||||||||||
Sbjct: 8192 cgcggcgcagcaggccgacg 8211
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>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0092C08
          Length = 131049

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 325    acctccctcgccctccccaacgtc 348
              ||||||||||||||||||| ||||
Sbjct: 101185 acctccctcgccctccccagcgtc 101162
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>dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1111_H02
          Length = 108603

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 325  acctccctcgccctccccaacgtc 348
            ||||||||||||||||||| ||||
Sbjct: 3689 acctccctcgccctccccagcgtc 3666
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 171     ccatggcgcggcgcagcagg 190
               ||||||||||||||||||||
Sbjct: 5393029 ccatggcgcggcgcagcagg 5393048



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     gcggcgcagcaggccgacga 197
               ||||||||||||||||||||
Sbjct: 3409346 gcggcgcagcaggccgacga 3409327
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>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0084P08
          Length = 158656

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 333   cgccctccccaacgtcaccgtgtccggc 360
             ||||||| |||||||||||||| |||||
Sbjct: 95828 cgccctcgccaacgtcaccgtgcccggc 95801
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>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0450B04
          Length = 153268

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   gtcggcggccacctcctcgc 277
             ||||||||||||||||||||
Sbjct: 79877 gtcggcggccacctcctcgc 79858
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>dbj|AK119491.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-D04, full
           insert sequence
          Length = 1360

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 gtcggcggccacctcctcgc 277
           ||||||||||||||||||||
Sbjct: 43  gtcggcggccacctcctcgc 62
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>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0042B03
          Length = 167669

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 157    tgcctcgtcctgcgccatggcgcg 180
              ||||||||||| ||||||||||||
Sbjct: 113773 tgcctcgtcctccgccatggcgcg 113796
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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ccatggcgcggcgcagcagg 190
             ||||||||||||||||||||
Sbjct: 83308 ccatggcgcggcgcagcagg 83327
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>emb|X86780.1|SHGCPIR S.hygroscopicus gene cluster for polyketide immunosuppressant rapamycin
          Length = 107379

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    ccgacgccatcggcgggctc 387
              ||||||||||||||||||||
Sbjct: 105482 ccgacgccatcggcgggctc 105501
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>gb|AC140337.3| Mus musculus BAC clone RP23-238H7 from 1, complete sequence
          Length = 229594

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   gcttccccaagttctctaca 453
             ||||||||||||||||||||
Sbjct: 68890 gcttccccaagttctctaca 68909
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>gb|L13034.1|BPEFLAGEL Bordetella bronchiseptica flagellin (flaA) gene, complete cds
          Length = 1572

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 341  ccaacgtcaccgtgtccggc 360
            ||||||||||||||||||||
Sbjct: 1179 ccaacgtcaccgtgtccggc 1198


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,957,695
Number of Sequences: 3902068
Number of extensions: 2957695
Number of successful extensions: 69122
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67546
Number of HSP's gapped (non-prelim): 1576
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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