>SYIM_MOUSE (Q8BIJ6) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS)
          Length = 1012

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +3

Query: 216 VYHTQKSGRRRVVVLTEENVIASLDLRSGDIFWRHVIEKNNPIDQLSLSAGKYVVTLSSG 395
           V+H +      +   T E++I  ++    D++W    E+  P + L+ + G   +  + G
Sbjct: 534 VFHHKTKDEYLINSQTTEHIIKLVEQHGSDVWWTLPAEQLLPAEVLAQAGGPGALEYAPG 593

Query: 396 GSILRAW 416
             IL  W
Sbjct: 594 QDILDIW 600

>RNC_MYCGE (P47607) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 262

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 213 AVYHTQKSGRRRV-VVLTEENVIASLDLRSGDIFWRHVIEKNNPIDQLSL 359
           +++  QK    RV V LT  N++ S+    GDI W   I  N   D  S+
Sbjct: 168 SLFQEQKLPEPRVRVSLTSNNLVLSIIELDGDIIWSQAIPNNKNYDDKSV 217

>DYIN_DROME (Q24246) Dynein intermediate chain, cytosolic (DH IC) (Cytoplasmic|
           dynein intermediate chain) (Protein short wing)
          Length = 663

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 17/98 (17%)
 Frame = +3

Query: 180 WHQKYIGKVKQAVYHTQKSGRRRVVVLTEENVIASLDLRSGDIFWRHVIEKNNPIDQLSL 359
           W+ K+     + V+H Q +           N+I         + W + ++K  PI +  L
Sbjct: 350 WNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPL 409

Query: 360 SAGKY-----------------VVTLSSGGSILRAWNL 422
           SA  +                 V+++SS G  L +W+L
Sbjct: 410 SAAAHTHPVYCLQMVGTQNAHNVISISSDGK-LCSWSL 446

>YDEH_ECOLI (P31129) Hypothetical protein ydeH|
          Length = 296

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 195 IGKVKQAVYHTQKSGRRRVVVLTEENVI 278
           IG+  +A+Y  +++GR R + + E+NVI
Sbjct: 266 IGRADRAMYEGKQTGRNRCMFIDEQNVI 293

>KE4_CANFA (Q5TJF6) Zinc transporter SLC39A7 (Solute carrier family 39 member|
           7) (Histidine-rich membrane protein Ke4)
          Length = 469

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 315 AKIYLLNEDQEKRSHFPLSRPQHASSHSSE 226
           A ++L+    E  SH PL +P H  SHS +
Sbjct: 184 AFLHLIPHALEPHSHHPLEQPGHGHSHSGQ 213

>S3TC2_MOUSE (Q80VA5) SH3 domain and tetratricopeptide repeats-containing|
           protein 2
          Length = 1289

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 267 ENVIASLDLRSGDIFWRHVIEKNNPIDQ----LSLSAGKYVVTLSSGGSILRAWNLPDGQ 434
           EN+   L L+ G  F R V     P D+    L+L   + +  LS G S   A +L  GQ
Sbjct: 166 ENIYLGLLLQEGHFFCRAVCSVAQPADKEGEYLTLCKNELISVLSGGESECEAMSLVTGQ 225

>APN1_CAEEL (Q10002) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)|
           (AP endonuclease) (Apurinic-apyrimidinic endonuclease)
          Length = 396

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 180 WHQKYIGKVKQAVYHTQKSGRRRVVVLTEENVIASLDLRSGDI---FWRHVIEKNNPIDQ 350
           +H    G ++QA+Y+ +  G R   +        +    S ++   +W+ V E N P+DQ
Sbjct: 122 FHVSAAGGLEQAIYNARAEGCRSFAMFVRNQRTWNHKPMSEEVVENWWKAVRETNFPLDQ 181

Query: 351 LSLSAGKYVVTLSS 392
           + +  G Y++   S
Sbjct: 182 I-VPHGSYLMNAGS 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,056,331
Number of Sequences: 219361
Number of extensions: 850663
Number of successful extensions: 2417
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2417
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)