ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1INHA_BOVIN (P07994) Inhibin alpha chain precursor 29 5.9
2ADA1B_MOUSE (P97717) Alpha-1B adrenergic receptor (Alpha 1B-adre... 28 7.7
3ADA1B_RAT (P15823) Alpha-1B adrenergic receptor (Alpha 1B-adreno... 28 7.7

>INHA_BOVIN (P07994) Inhibin alpha chain precursor|
          Length = 360

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 299 VFLLVVLALRGRGASGLDADGELLMAFRRAVTADPLG 409
           + LL++    G G  GL+ D EL++A  RA+  D LG
Sbjct: 5   LLLLLLAPQGGHGCHGLELDRELVLAKVRALFLDALG 41



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>ADA1B_MOUSE (P97717) Alpha-1B adrenergic receptor (Alpha 1B-adrenoceptor)|
           (Alpha 1B-adrenoreceptor)
          Length = 514

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 211 SFVRSFGCNCNGGQEARRR 267
           +F+R  GC C GG+  RRR
Sbjct: 357 AFMRILGCQCRGGRRRRRR 375



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>ADA1B_RAT (P15823) Alpha-1B adrenergic receptor (Alpha 1B-adrenoceptor)|
           (Alpha 1B-adrenoreceptor)
          Length = 515

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 211 SFVRSFGCNCNGGQEARRR 267
           +F+R  GC C GG+  RRR
Sbjct: 358 AFMRILGCQCRGGRRRRRR 376


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,867,261
Number of Sequences: 219361
Number of extensions: 504630
Number of successful extensions: 1399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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