ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl33c09 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 39.7 bits (91), Expect = 0.005 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 18/142 (12%) Frame = +3 Query: 93 ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 269 EL ++L T+S D+ ++AA L+R + P F + L V A G+ Q R+AA + Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61 Query: 270 KIFARRNMEGGLSSSDLYREFRDQLAQALLRVEPAILR-VLIEVLRQVAEKDF------- 425 K L+S D + + Q Q L ++ R V VL+ + + + Sbjct: 62 K--------NSLTSKD--PDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQ 111 Query: 426 ---------VKENSWPELVPQL 464 + N WPEL+PQL Sbjct: 112 CVAGIACAEIPVNQWPELIPQL 133
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 38.9 bits (89), Expect = 0.008 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 14/138 (10%) Frame = +3 Query: 93 ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 269 EL ++L T+S D+ ++AA L+R + P F + L V A G+ Q R+AA + Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61 Query: 270 KIFARRNMEGGLSSSDLYREFRDQL----AQALLRVEPAILRVL-IEVLRQVAEKDFVKE 434 ++ ++ D+ +++ + A A V+ +L+ L E R + V Sbjct: 62 RLLTSKD-------PDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAG 114 Query: 435 --------NSWPELVPQL 464 + WPEL+PQL Sbjct: 115 IACAEIPVSQWPELIPQL 132
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 38.5 bits (88), Expect = 0.010 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 18/142 (12%) Frame = +3 Query: 93 ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 269 EL ++L T+S D+ ++AA L+R + P F + L V A G+ Q R+AA + Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61 Query: 270 KIFARRNMEGGLSSSDLYREFRDQLAQALLRVEPAILRVLIEVLRQVAEKDFVKENS--- 440 K L+S D + + Q Q L ++ R + + Q + + +S Sbjct: 62 K--------NSLTSKD--PDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQ 111 Query: 441 --------------WPELVPQL 464 WPEL+PQL Sbjct: 112 CVAGIACAEIPVSQWPELIPQL 133
>CSE1_PAGMA (Q9PTU3) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 33.9 bits (76), Expect = 0.25 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 5/136 (3%) Frame = +3 Query: 96 LRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYLKI 275 L L L D T A L+ S G+ +P+ LL + D R+ AA K Sbjct: 11 LTEFLRKALDPDPTVRRPAEKFLE--SVEGNQNYPLLLLTLLEKSQDNVIRVCAAVTFKN 68 Query: 276 FARRNM-----EGGLSSSDLYREFRDQLAQALLRVEPAILRVLIEVLRQVAEKDFVKENS 440 + +RN E S + + +L I + L + + + +DF ++ Sbjct: 69 YIKRNWRVIEDEPNKVSDPDRTAIKANIVNLMLSSPEQIQKQLSDAISIIGREDFPQK-- 126 Query: 441 WPELVPQLKLVIQSSD 488 WP+L+ ++ +S D Sbjct: 127 WPDLLTEMVTRFRSGD 142
>CSE1_DROME (Q9XZU1) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 975 Score = 33.5 bits (75), Expect = 0.32 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 8/139 (5%) Frame = +3 Query: 96 LRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALL-AVAAGDGDQGTRIAAAAYLK 272 L L TLSAD A L+ S +PI LL + D TR+A A K Sbjct: 11 LAGYLQQTLSADPNVRRPAEKLLE--STELQQNYPILLLNLIDKAQMDMTTRVAGAIAFK 68 Query: 273 IFARRNMEGGLSSSDLYR-------EFRDQLAQALLRVEPAILRVLIEVLRQVAEKDFVK 431 + +RN L S R + + +L A+ + L + + + + DF K Sbjct: 69 NYIKRNWAAHLDSDGPDRIHESDRNTIKTLIVTLMLHSPVALQKQLSDAVSIIGKYDFPK 128 Query: 432 ENSWPELVPQLKLVIQSSD 488 + WP+L+ ++ S D Sbjct: 129 K--WPQLIDEMVERFASGD 145
>CP6D3_MUSDO (Q964Q7) Cytochrome P450 6d3 (EC 1.14.-.-) (CYPVID3) (Pyrethroid| resistance cytochrome P450) Length = 520 Score = 32.7 bits (73), Expect = 0.55 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 270 KIFARRNMEGGLSSSDLYREFRDQLAQALLRVEPAILRVLIEVLRQVAEKDF 425 K+F R+ GL DLY +F++Q+ L +PA+L E+ RQ+ DF Sbjct: 43 KVF-RKERPFGLVMYDLYEKFQEQVVGIYLFFKPALLIRDAELARQILTSDF 93
>PKP3_HUMAN (Q9Y446) Plakophilin-3| Length = 797 Score = 30.8 bits (68), Expect = 2.1 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = -2 Query: 416 LRNLAKNFNQHSKNCRFHSKQSLSKLVAKLPVQIGRREPPFHV 288 L L +N +++++N S + +S L+ KLP +G + PP V Sbjct: 675 LTGLIRNLSRNARNKDEMSTKVVSHLIEKLPGSVGEKSPPAEV 717
>IMB5_SCHPO (Q10297) Importin beta-5 subunit (Karyopherin beta-5 subunit) (114| kDa karyopherin) Length = 986 Score = 30.8 bits (68), Expect = 2.1 Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 9/142 (6%) Frame = +3 Query: 90 NELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYL 269 +++ LL SAD S A GL + D F L +A+ R + YL Sbjct: 4 SKIIKLLEQVQSADPNSRIQAELGLRDLEKYHD--FAAKLTDIASSGASVPLRQGSLIYL 61 Query: 270 KIFARRN--------MEGGLSSSDLYREFRDQLAQALLRVEP-AILRVLIEVLRQVAEKD 422 + + + +G + ++ + R+ L L+ ++ +++ + + +A D Sbjct: 62 QRYIVHHWSPLFEQFQDGPIPDENVKKHVRETLLHLLVSLDNFTLIKAVAYAVSLIANVD 121 Query: 423 FVKENSWPELVPQLKLVIQSSD 488 + E WPE+VP + ++QS++ Sbjct: 122 YPDE--WPEVVPAVLHLLQSTN 141
>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3| Length = 944 Score = 30.0 bits (66), Expect = 3.6 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Frame = +3 Query: 177 AAGDPRFPIALLAVAAGDGDQGTRI-----AAAAYLKIFARRNMEGGLSSSDLYR 326 AAGDP P A L + DGD A K RR G LS+ DL R Sbjct: 885 AAGDPAEPTAALPIIRSDGDDSEAATEQLNARGTSDKTRQRRRGGGALSAQDLLR 939
>CSE1_MOUSE (Q9ERK4) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 30.0 bits (66), Expect = 3.6 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Frame = +3 Query: 96 LRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYLKI 275 L L TL D A L+ S G+ +P+ LL + D ++ A+ K Sbjct: 11 LTEYLKKTLDPDPAIRRPAEKFLE--SVEGNQNYPLLLLTLLEKSQDNVIKVCASVTFKN 68 Query: 276 FARRNME------GGLSSSDLYREFRDQLAQALLRVEPAILRVLIEVLRQVAEKDFVKEN 437 + +RN + +D + + +L I + L + + + +DF ++ Sbjct: 69 YIKRNWRIVEDEPNKICEADRV-AIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQK- 126 Query: 438 SWPELVPQLKLVIQSSD 488 WP+L+ ++ QS D Sbjct: 127 -WPDLLTEMVNRFQSGD 142
>CSE1_HUMAN (P55060) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 30.0 bits (66), Expect = 3.6 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Frame = +3 Query: 96 LRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYLKI 275 L L TL D A L+ S G+ +P+ LL + D ++ A+ K Sbjct: 11 LTEYLKKTLDPDPAIRRPAEKFLE--SVEGNQNYPLLLLTLLEKSQDNVIKVCASVTFKN 68 Query: 276 FARRNME------GGLSSSDLYREFRDQLAQALLRVEPAILRVLIEVLRQVAEKDFVKEN 437 + +RN + +D + + +L I + L + + + +DF ++ Sbjct: 69 YIKRNWRIVEDEPNKICEADRV-AIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQK- 126 Query: 438 SWPELVPQLKLVIQSSD 488 WP+L+ ++ QS D Sbjct: 127 -WPDLLTEMVNRFQSGD 142
>PKP3_MOUSE (Q9QY23) Plakophilin-3| Length = 797 Score = 29.3 bits (64), Expect = 6.1 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = -2 Query: 416 LRNLAKNFNQHSKNCRFHSKQSLSKLVAKLPVQIGRREPPFHV 288 L L +N +++++N S + +S L+ KLP +G + PP V Sbjct: 675 LTGLIRNLSRNARNKDEMSTKVVSHLIEKLPGSVGEKCPPAEV 717
>JHD1_ASHGO (Q75AL5) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 486 Score = 28.9 bits (63), Expect = 7.9 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = -1 Query: 399 ELQSALEELQVP-LEAEPEQAGRETPCTDRTTRA 301 ELQ + EL+ P L A+PE +G +TP D A Sbjct: 162 ELQQSFAELREPVLVADPEHSGMQTPAMDEQVLA 195
>Y4JQ_RHISN (P55517) Hypothetical 115.9 kDa protein y4jQ| Length = 1039 Score = 28.9 bits (63), Expect = 7.9 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Frame = +3 Query: 147 AATAGLDRISAAG-DPRFPIALLAVAAGDGDQGTRIAAAAYLKIFARRNMEGGLSSSDLY 323 +A+ D ++ G DPR I L VAA GD+G + Y+ + N+ G S++ Sbjct: 462 SASVTEDEVARIGHDPRVAIGLSRVAASLGDEGQNL---VYIAVEQHLNVRGMSKPSEIV 518 Query: 324 REFRDQLAQALLRVEPAILRVLIEVLRQVAEKD 422 + +A + LR +E L + +D Sbjct: 519 ADSAVDVAFLREACTSSSLRQSLEFLSKAEMED 551
>TBC2_CHLRE (Q8VXP3) Tbc2 translation factor, chloroplast precursor| Length = 1115 Score = 28.9 bits (63), Expect = 7.9 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 10/49 (20%) Frame = +3 Query: 147 AATAGLDRISAAGDPRFPIALLAVAAGDG----------DQGTRIAAAA 263 AA AG +AAGD ++ + AAGDG D GT AAA Sbjct: 933 AAPAGASSAAAAGDSPAALSAVPAAAGDGALVPSFMSIDDDGTAAVAAA 981
>TI50C_DROME (Q9W4V8) Import inner membrane translocase subunit TIM50-C,| mitochondrial precursor Length = 428 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 225 GDGDQGTRIAAAAYLKIFARRNMEGGLSSSDLYREFRDQLAQ 350 G+ D G + A+LKI A+ N++ YR+F D + Q Sbjct: 350 GNDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQ 391
>HEX_ADE01 (Q04965) Hexon protein (Late protein 2) (Fragment)| Length = 467 Score = 28.9 bits (63), Expect = 7.9 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = -1 Query: 477 GSPASTEAQVQATNSP*QNLSPQLGEELQSALEELQVPLEAEPEQAGRETPCTDRTTRAP 298 G+P S E + + P Q ++ +L +E ++ EE + EAE QAG++ T +AP Sbjct: 9 GAPNSCEWEQE---EPTQEMAGELEDEEEAEEEEAEE--EAEAPQAGQKVKKTHVYAQAP 63 Query: 297 LPCCAGRKFSSKPRQL 250 L AG K ++ Q+ Sbjct: 64 L---AGEKITANGLQI 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,669,844 Number of Sequences: 219361 Number of extensions: 714629 Number of successful extensions: 2956 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2866 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2955 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
