ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl33c08 |
|---|---|
| Clone Library Name | barley_pub |
>CSMD3_HUMAN (Q7Z407) CUB and sushi domain-containing protein 3 precursor (CUB and| sushi multiple domains protein 3) Length = 3670 Score = 30.0 bits (66), Expect = 2.4 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +2 Query: 47 GPRRCHCAPLGTWSWRRD 100 GP C P GTWSWR + Sbjct: 2696 GPASIECLPNGTWSWRNE 2713
>CSMD3_MOUSE (Q80T79) CUB and sushi domain-containing protein 3 (CUB and sushi| multiple domains protein 3) (Fragment) Length = 2796 Score = 29.6 bits (65), Expect = 3.2 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = +2 Query: 47 GPRRCHCAPLGTWSWRRD 100 GP C P GTWSWR + Sbjct: 1822 GPASIECLPNGTWSWRTE 1839
>KLF8_HUMAN (O95600) Krueppel-like factor 8 (Basic krueppel-like factor 3)| (Zinc finger protein 741) Length = 359 Score = 29.3 bits (64), Expect = 4.1 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 130 LQPHGVLRAPISPPAPSSKWSAMAAARSVS 41 LQP +L+API PP P S + + S S Sbjct: 98 LQPASMLQAPIRPPKPQSSPQTLVVSTSTS 127
>GATC_DROME (P91623) GATA-binding factor-C (Transcription factor GATA-C)| (dGATA-C) (Protein grain) Length = 486 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Frame = +2 Query: 8 GAKSLHSSSPK-RDGPRRC-HCAPLGTWSWRRDG 103 G+ + H+S+PK R+ R C +C T WRRDG Sbjct: 243 GSGTTHTSTPKQREEGRECVNCGATSTPLWRRDG 276
>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin| (Endostatin-XV)] Length = 1367 Score = 28.9 bits (63), Expect = 5.4 Identities = 26/95 (27%), Positives = 37/95 (38%) Frame = -3 Query: 326 GFTGIAGEVPMRYPHIRRNPAKSVHFSRGEPRREGIXXXXXXXXXXXXRGAMADLGKKQG 147 G G +G+ M+ R P S +G+P G+ G M G Sbjct: 653 GLDGASGQQGMKGEKGARGPNGSAG-EKGDPGNRGLPGPPGKNGEVGPPGVMGPPG---- 707 Query: 146 KEEEQPPAAWRPPRPHLSSSSKFQVERNGSGEVRL 42 PP PP P ++ F++E GSG+VRL Sbjct: 708 -----PPGPPGPPGPGCTTELGFEIE--GSGDVRL 735
>SYK_TREPA (O83650) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 528 Score = 28.9 bits (63), Expect = 5.4 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +2 Query: 53 RRCHCAPLGTWSWRRDGGAED 115 RRC CA W+W RD GA D Sbjct: 416 RRCQCA----WNWIRDAGAPD 432
>JHD3B_HUMAN (O94953) JmjC domain-containing histone demethylation protein 3B| (EC 1.14.11.-) (Jumonji domain-containing protein 2B) Length = 1096 Score = 28.9 bits (63), Expect = 5.4 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = -1 Query: 358 LKEQSHTKLPLGSQGLPEKFQCDIPIFAAIRRRVCTSAEESLGGRASAAAPALTPEEDEE 179 L +SH K + P+K + + P F EE+ G A P + PEE+EE Sbjct: 369 LLRRSHRK-----RSQPKKPKPEDPKFPGEGTAGAALLEEAGGSVKEEAGPEVDPEEEEE 423 Query: 178 EP 173 EP Sbjct: 424 EP 425
>MEI1_CAEEL (P34808) Meiotic spindle formation protein mei-1 (EC 3.6.4.3)| (Katanin ATPase-containing subunit) Length = 472 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Frame = -3 Query: 155 KQGKEEEQP--PAAWRPPRPHLSSSSKFQVERNGSG 54 +Q E P P W P P L SSSKF + G G Sbjct: 88 RQSGSPEPPADPDVWSKPSPPLPSSSKFGATKKGVG 123
>GATA4_HUMAN (P43694) Transcription factor GATA-4 (GATA-binding factor 4)| Length = 442 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +1 Query: 307 PAIPVNPTAAWCVTAPSTTIPYAMPLRYSSRNRTSPASSH 426 PA + A+W A ++ P+ P+ +S R +PA+ H Sbjct: 163 PAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAARH 202
>BARH2_DROME (Q24256) Homeobox protein B-H2 (Homeobox protein BarH2)| Length = 645 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -3 Query: 176 AMADLGKKQGKEEEQPPAAWRPPRPHLSSSSKFQVERNGS 57 A A G +Q +++QPPAA R P S++S+ ER S Sbjct: 548 AAASAGAQQ--QQQQPPAASRSPATSQSANSEADCERTSS 585
>TB182_HUMAN (Q9C0C2) 182 kDa tankyrase 1-binding protein| Length = 1729 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Frame = -1 Query: 331 PLGSQGLPEKFQCDIPIFAAIRRRVCTSA-----EESLGGRASAAAPALTPEEDEEEPWR 167 P GSQGL E+ A RR S EE G +A L P D WR Sbjct: 1449 PFGSQGLLEEMLAASSSKAVARRESAASGLGGLLEEEGAGAGAAQEEVLEPGRDSPPSWR 1508
>DZIP1_HUMAN (Q86YF9) Zinc finger protein DZIP1 (DAZ-interacting protein 1/2)| Length = 867 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -3 Query: 164 LGKKQGKEEEQPPAAWRPP 108 LGKK GKE+++PP A P Sbjct: 803 LGKKSGKEQKEPPPAKNEP 821
>ARR1_ARATH (Q940D0) Two-component response regulator ARR1| Length = 690 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/66 (28%), Positives = 30/66 (45%) Frame = +3 Query: 228 PPRLSSAEVHTLRRIAANMGISHWNFSGNPCEPNGSLVCDCSFNNNTICHATEIFLKEQN 407 PP L+S++ + + +N FSG P S V S+ N T H++ + N Sbjct: 454 PPMLTSSQSSIRQPMLSNRISERSGFSGRNNIPESSRVLPTSYTNLTTQHSSS-SMPYNN 512 Query: 408 FTGQLP 425 F +LP Sbjct: 513 FQPELP 518
>TRUA_COREF (Q8FS31) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 282 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 4/30 (13%) Frame = +1 Query: 262 FAGLRRIWGYRIGTSPAIP----VNPTAAW 339 F+ LRR + YRI T PA P V TAAW Sbjct: 112 FSALRRHYVYRITTHPAGPLPTRVRDTAAW 141
>VL1_HPV61 (P50822) Major capsid protein L1| Length = 505 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/54 (29%), Positives = 25/54 (46%) Frame = -1 Query: 355 KEQSHTKLPLGSQGLPEKFQCDIPIFAAIRRRVCTSAEESLGGRASAAAPALTP 194 KE + KL + L +KF D+ F R+ + + S+ AAP+ TP Sbjct: 439 KEDRYAKLSFWTVDLRDKFSTDLDQFPLGRKFLLQAGPRSVSVSRKRAAPSSTP 492
>TSN7_MOUSE (Q62283) Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily| member 2) (Cell surface glycoprotein A15) (PE31) (TALLA homolog) (CD231 antigen) Length = 249 Score = 28.1 bits (61), Expect = 9.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +2 Query: 137 LLPCLASCRGPPWLLFIF 190 L C A+CRG PW+L ++ Sbjct: 74 LFGCFATCRGSPWMLKLY 91
>TSN7_HUMAN (P41732) Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily| member 2) (Cell surface glycoprotein A15) (T-cell acute lymphoblastic leukemia-associated antigen 1) (TALLA-1) (Membrane component, X chromosome, surface marker 1) (CD231 antigen) Length = 249 Score = 28.1 bits (61), Expect = 9.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +2 Query: 137 LLPCLASCRGPPWLLFIF 190 L C A+CRG PW+L ++ Sbjct: 74 LFGCFATCRGSPWMLKLY 91
>TSN7_PONPY (Q7YQK9) Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily| member 2) (CD231 antigen) Length = 244 Score = 28.1 bits (61), Expect = 9.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +2 Query: 137 LLPCLASCRGPPWLLFIF 190 L C A+CRG PW+L ++ Sbjct: 69 LFGCFATCRGSPWMLKLY 86
>TSN7_PANTR (Q7YQL0) Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily| member 2) (CD231 antigen) Length = 244 Score = 28.1 bits (61), Expect = 9.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +2 Query: 137 LLPCLASCRGPPWLLFIF 190 L C A+CRG PW+L ++ Sbjct: 69 LFGCFATCRGSPWMLKLY 86
>TOP2A_CHICK (O42130) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1553 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = -2 Query: 315 DCRRSSNAISPYSPQSGEECALQQRRA*EGGHQQQ-LPP*PLKKMKRS 175 D ++ N+ P S ++ Q+R+A +G +Q LP P+KKMKR+ Sbjct: 1248 DEKQEGNSSGDKEPSSLKQRLAQKRKAEQGTKRQTTLPFKPIKKMKRN 1295 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,588,771 Number of Sequences: 219361 Number of extensions: 1300728 Number of successful extensions: 4784 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4778 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
