ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BRO1_ASPFU (Q4X0Z5) Vacuolar protein-sorting protein bro1 (BRO d... 30 3.8
2SYNPO_HUMAN (Q8N3V7) Synaptopodin 29 5.0

>BRO1_ASPFU (Q4X0Z5) Vacuolar protein-sorting protein bro1 (BRO|
           domain-containing protein 1)
          Length = 976

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 36  RQLPDQACLRPSPTSTPLFLRASQKMLAHSPKVACGGRP 152
           RQL ++    P PTSTPL   A  K  +  P V   G P
Sbjct: 766 RQLMERLSTEPKPTSTPLPSTAPSKAKSPPPPVKAPGYP 804



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>SYNPO_HUMAN (Q8N3V7) Synaptopodin|
          Length = 929

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
 Frame = +3

Query: 9   RTTPRIILRRQLPDQACLRPSPTSTPLF-LRASQKMLAH-------SPKVACGGRPATV 161
           RT P  +    LP+   LRP PT  P + LR S  +L+        SP+ A   +P+++
Sbjct: 782 RTPPASLYHGYLPENGVLRPEPTKQPPYQLRPSLFVLSPIKEPAKVSPRAASPAKPSSL 840


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,802,903
Number of Sequences: 219361
Number of extensions: 857287
Number of successful extensions: 2429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2429
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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