ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl33c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 172 6e-40
2gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 172 6e-40
3gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 172 6e-40
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 172 6e-40
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
7dbj|AK109643.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
10emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 54 4e-04
11emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 54 4e-04
12emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa... 54 4e-04
13ref|XM_479533.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
14ref|NM_004418.2| Homo sapiens dual specificity phosphatase 2 (DU... 42 1.4
15gb|BC007771.2| Homo sapiens dual specificity phosphatase 2, mRNA... 42 1.4
16gb|AF331843.1| Homo sapiens phosphatase mRNA, complete cds 42 1.4
17emb|CR614078.1| full-length cDNA clone CS0DK002YI03 of HeLa cell... 42 1.4
18emb|CR613393.1| full-length cDNA clone CS0DN003YD17 of Adult bra... 42 1.4
19emb|CR609480.1| full-length cDNA clone CS0DK008YG09 of HeLa cell... 42 1.4
20dbj|AK133917.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 42 1.4
21dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
22gb|AC012307.8| Homo sapiens BAC clone RP11-574O17 from 2, comple... 42 1.4
23dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
24dbj|AK106500.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
25dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
26gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.4
27gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.4
28gb|U23853.1|HSU23853 Human dual-specific phosphoprotein phosphat... 42 1.4
29gb|L11329.1|HUMPAC1 Homo sapiens protein tyrosine phosphatase (P... 42 1.4
30gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.6
31ref|XM_482638.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
32ref|XM_482637.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
33gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.6
34ref|XR_004221.1| PREDICTED: Mus musculus similar to rRNA promote... 40 5.6
35gb|AC131792.4| Mus musculus BAC clone RP24-468O15 from chromosom... 40 5.6
36gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.6
37gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 5.6
38gb|AC145213.1| Homo sapiens fosmid clone XXFOS-800837B7 from 7, ... 40 5.6
39gb|AC144434.2| Homo sapiens fosmid clone XXFOS-801207C6 from 7, ... 40 5.6
40emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.6
41emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.6
42emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.6
43emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ... 40 5.6
44emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 40 5.6
45gb|AC136964.2| Sus scrofa domestica clone RP44-154L9, complete s... 40 5.6
46emb|AJ428208.1|MMU428208 Mus musculus mRNA for phosphacan short ... 40 5.6
47gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.6
48gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 5.6
49gb|AF474141.1| Oryza sativa typical A-type R2R3 Myb protein gene... 40 5.6
50dbj|AK154459.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 5.6
51gb|U77931.1|RNU77931 Rattus norvegicus rRNA promoter binding pro... 40 5.6
52gb|DQ248949.1| Taihangia rupestris TrSHP MADS-box protein mRNA, ... 40 5.6
53tpg|BK000964.1| TPA: TPA_exp: Mus musculus ribosomal DNA, comple... 40 5.6
54dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
55gb|AC092535.4| Homo sapiens BAC clone RP11-20I20 from 4, complet... 40 5.6
56ref|NM_147136.1| Rattus norvegicus rRNA promoter binding protein... 40 5.6
57gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
58dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.6
59dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
60dbj|AB114630.1| Mus musculus CNR gene for cadherin-related neuro... 40 5.6
61dbj|AK111984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
62dbj|AK111772.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
63emb|X82564.1|MM45SRRNA M.musculus 45S pre rRNA gene 40 5.6
64gb|AC148014.3| Mus musculus BAC clone RP23-118N15 from 19, compl... 40 5.6
65emb|X00525.1|MMRNA02 Mouse 28S ribosomal RNA 40 5.6 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  172 bits (87), Expect = 6e-40
 Identities = 141/159 (88%)
 Strand = Plus / Plus

                                                                            
Query: 256      gcggccaggcgtccgacggcgtggtgatcgcgcaggcggacctgcaggggctgcaggcca 315
                |||| ||| |||| ||||||||||||||||||||||| |||||||||||  ||||||| |
Sbjct: 10409718 gcgggcagccgtcggacggcgtggtgatcgcgcaggccgacctgcagggtttgcaggcga 10409777

                                                                            
Query: 316      tccggcaggcgctggtcgacccgcgggggttcctgagcgggtggaacggcacgggcctcg 375
                ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct: 10409778 tccggcaagcgctggttgacccgcgcgggttcctgcgcgggtggaacggcacggggctcg 10409837

                                                       
Query: 376      gcgcctgctccggggagtgggccggcgtcaagtgcgcgc 414
                 ||| |||||||| | |||||||||  ||||||||||||
Sbjct: 10409838 acgcgtgctccggcgggtgggccgggatcaagtgcgcgc 10409876



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 40       tagctagctagcgagctaggtacg 63
                |||||||||||| |||||||||||
Sbjct: 12993753 tagctagctagctagctaggtacg 12993730



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 38       cctagctagctagcgagcta 57
                ||||||||||||||||||||
Sbjct: 10681683 cctagctagctagcgagcta 10681664
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score =  172 bits (87), Expect = 6e-40
 Identities = 141/159 (88%)
 Strand = Plus / Plus

                                                                         
Query: 256   gcggccaggcgtccgacggcgtggtgatcgcgcaggcggacctgcaggggctgcaggcca 315
             |||| ||| |||| ||||||||||||||||||||||| |||||||||||  ||||||| |
Sbjct: 66271 gcgggcagccgtcggacggcgtggtgatcgcgcaggccgacctgcagggtttgcaggcga 66330

                                                                         
Query: 316   tccggcaggcgctggtcgacccgcgggggttcctgagcgggtggaacggcacgggcctcg 375
             ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct: 66331 tccggcaagcgctggttgacccgcgcgggttcctgcgcgggtggaacggcacggggctcg 66390

                                                    
Query: 376   gcgcctgctccggggagtgggccggcgtcaagtgcgcgc 414
              ||| |||||||| | |||||||||  ||||||||||||
Sbjct: 66391 acgcgtgctccggcgggtgggccgggatcaagtgcgcgc 66429
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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03,
              from chromosome 3, complete sequence
          Length = 125800

 Score =  172 bits (87), Expect = 6e-40
 Identities = 141/159 (88%)
 Strand = Plus / Plus

                                                                          
Query: 256    gcggccaggcgtccgacggcgtggtgatcgcgcaggcggacctgcaggggctgcaggcca 315
              |||| ||| |||| ||||||||||||||||||||||| |||||||||||  ||||||| |
Sbjct: 123184 gcgggcagccgtcggacggcgtggtgatcgcgcaggccgacctgcagggtttgcaggcga 123243

                                                                          
Query: 316    tccggcaggcgctggtcgacccgcgggggttcctgagcgggtggaacggcacgggcctcg 375
              ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct: 123244 tccggcaagcgctggttgacccgcgcgggttcctgcgcgggtggaacggcacggggctcg 123303

                                                     
Query: 376    gcgcctgctccggggagtgggccggcgtcaagtgcgcgc 414
               ||| |||||||| | |||||||||  ||||||||||||
Sbjct: 123304 acgcgtgctccggcgggtgggccgggatcaagtgcgcgc 123342
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  172 bits (87), Expect = 6e-40
 Identities = 141/159 (88%)
 Strand = Plus / Plus

                                                                            
Query: 256      gcggccaggcgtccgacggcgtggtgatcgcgcaggcggacctgcaggggctgcaggcca 315
                |||| ||| |||| ||||||||||||||||||||||| |||||||||||  ||||||| |
Sbjct: 10407819 gcgggcagccgtcggacggcgtggtgatcgcgcaggccgacctgcagggtttgcaggcga 10407878

                                                                            
Query: 316      tccggcaggcgctggtcgacccgcgggggttcctgagcgggtggaacggcacgggcctcg 375
                ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct: 10407879 tccggcaagcgctggttgacccgcgcgggttcctgcgcgggtggaacggcacggggctcg 10407938

                                                       
Query: 376      gcgcctgctccggggagtgggccggcgtcaagtgcgcgc 414
                 ||| |||||||| | |||||||||  ||||||||||||
Sbjct: 10407939 acgcgtgctccggcgggtgggccgggatcaagtgcgcgc 10407977



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 40       tagctagctagcgagctaggtacg 63
                |||||||||||| |||||||||||
Sbjct: 12990528 tagctagctagctagctaggtacg 12990505



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 38       cctagctagctagcgagcta 57
                ||||||||||||||||||||
Sbjct: 10679784 cctagctagctagcgagcta 10679765
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 357    tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcg 411
              ||||||| ||| |||||||||||||||||||| |  |||| |||| |||||||||
Sbjct: 417544 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcg 417598
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 357    tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcg 411
              ||||||| ||| |||||||||||||||||||| |  |||| |||| |||||||||
Sbjct: 358583 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcg 358637
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>dbj|AK109643.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-G09, full
           insert sequence
          Length = 1938

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 357 tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcg 411
           ||||||| ||| |||||||||||||||||||| |  |||| |||| |||||||||
Sbjct: 270 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcg 324
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 357    tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcg 411
              ||||||| ||| |||||||||||||||||||| |  |||| |||| |||||||||
Sbjct: 358583 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcg 358637
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 357    tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcg 411
              ||||||| ||| |||||||||||||||||||| |  |||| |||| |||||||||
Sbjct: 417544 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcg 417598
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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 357    tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcg 411
              ||||||| ||| |||||||||||||||||||| |  |||| |||| |||||||||
Sbjct: 150595 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcg 150649
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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 357   tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcg 411
             ||||||| ||| |||||||||||||||||||| |  |||| |||| |||||||||
Sbjct: 65901 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcg 65955
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>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141089

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                     
Query: 357    tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcg 411
              ||||||| ||| |||||||||||||||||||| |  |||| |||| |||||||||
Sbjct: 129228 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcg 129174
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>ref|XM_479533.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1261

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 239 ctcggcgtcgccggctcgcggccag 263
           ||||||||||||||| |||||||||
Sbjct: 620 ctcggcgtcgccggcgcgcggccag 644
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>ref|NM_004418.2| Homo sapiens dual specificity phosphatase 2 (DUSP2), mRNA
          Length = 1702

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 gacctgcaggggctgcaggcc 314
           |||||||||||||||||||||
Sbjct: 653 gacctgcaggggctgcaggcc 673
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>gb|BC007771.2| Homo sapiens dual specificity phosphatase 2, mRNA (cDNA clone
           MGC:12703 IMAGE:4297852), complete cds
          Length = 1684

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 gacctgcaggggctgcaggcc 314
           |||||||||||||||||||||
Sbjct: 630 gacctgcaggggctgcaggcc 650
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>gb|AF331843.1| Homo sapiens phosphatase mRNA, complete cds
          Length = 1461

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 gacctgcaggggctgcaggcc 314
           |||||||||||||||||||||
Sbjct: 298 gacctgcaggggctgcaggcc 318
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>emb|CR614078.1| full-length cDNA clone CS0DK002YI03 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1638

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 gacctgcaggggctgcaggcc 314
           |||||||||||||||||||||
Sbjct: 639 gacctgcaggggctgcaggcc 659
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>emb|CR613393.1| full-length cDNA clone CS0DN003YD17 of Adult brain of Homo sapiens
           (human)
          Length = 1628

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 gacctgcaggggctgcaggcc 314
           |||||||||||||||||||||
Sbjct: 641 gacctgcaggggctgcaggcc 661
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>emb|CR609480.1| full-length cDNA clone CS0DK008YG09 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1523

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 gacctgcaggggctgcaggcc 314
           |||||||||||||||||||||
Sbjct: 627 gacctgcaggggctgcaggcc 647
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>dbj|AK133917.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730522K16 product:hypothetical
            protein, full insert sequence
          Length = 2507

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 334  acccgcgggggttcctgagcgggtggaac 362
            ||||||||||||||| ||||||| |||||
Sbjct: 1382 acccgcgggggttccggagcgggaggaac 1410
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 239      ctcggcgtcgccggctcgcggccag 263
                ||||||||||||||| |||||||||
Sbjct: 28706502 ctcggcgtcgccggcgcgcggccag 28706526
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>gb|AC012307.8| Homo sapiens BAC clone RP11-574O17 from 2, complete sequence
          Length = 145918

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 294   gacctgcaggggctgcaggcc 314
             |||||||||||||||||||||
Sbjct: 22655 gacctgcaggggctgcaggcc 22635
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>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1205_F02
          Length = 112862

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 239   ctcggcgtcgccggctcgcggccag 263
             ||||||||||||||| |||||||||
Sbjct: 14063 ctcggcgtcgccggcgcgcggccag 14087
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>dbj|AK106500.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E10, full
           insert sequence
          Length = 1261

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 239 ctcggcgtcgccggctcgcggccag 263
           ||||||||||||||| |||||||||
Sbjct: 620 ctcggcgtcgccggcgcgcggccag 644
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>dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1409_C08
          Length = 90673

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 239   ctcggcgtcgccggctcgcggccag 263
             ||||||||||||||| |||||||||
Sbjct: 81672 ctcggcgtcgccggcgcgcggccag 81696
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 361     acggcacgggcctcggcgcct 381
               |||||||||||||||||||||
Sbjct: 1790565 acggcacgggcctcggcgcct 1790545
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 202    tcacgctcgcgctgtcactgctggt 226
              |||||||||||||||| ||||||||
Sbjct: 681667 tcacgctcgcgctgtcgctgctggt 681691
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>gb|U23853.1|HSU23853 Human dual-specific phosphoprotein phosphatase (PAC1) gene, complete
            cds
          Length = 2296

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 294  gacctgcaggggctgcaggcc 314
            |||||||||||||||||||||
Sbjct: 1124 gacctgcaggggctgcaggcc 1144
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>gb|L11329.1|HUMPAC1 Homo sapiens protein tyrosine phosphatase (PAC-1) mRNA, complete
           cds
          Length = 1709

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 gacctgcaggggctgcaggcc 314
           |||||||||||||||||||||
Sbjct: 653 gacctgcaggggctgcaggcc 673
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 315     atccggcaggcgctggtcga 334
               ||||||||||||||||||||
Sbjct: 2475584 atccggcaggcgctggtcga 2475565
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>ref|XM_482638.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2671

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 312 gccatccggcaggcgctggtcgacccgc 339
           |||||| |||||| ||||||||||||||
Sbjct: 231 gccatcaggcaggggctggtcgacccgc 258
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>ref|XM_482637.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2158

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 312 gccatccggcaggcgctggtcgacccgc 339
           |||||| |||||| ||||||||||||||
Sbjct: 137 gccatcaggcaggggctggtcgacccgc 164
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    tcgcgcaggcggacctgcag 302
              ||||||||||||||||||||
Sbjct: 472905 tcgcgcaggcggacctgcag 472924
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>ref|XR_004221.1| PREDICTED: Mus musculus similar to rRNA promoter binding protein
           (LOC673388), mRNA
          Length = 1051

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 335 cccgcgggggttcctgagcgggtggaac 362
           |||||||||||||| ||||||| |||||
Sbjct: 745 cccgcgggggttccggagcgggaggaac 718
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>gb|AC131792.4| Mus musculus BAC clone RP24-468O15 from chromosome 19, complete sequence
          Length = 162238

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    aatgggtgtgtggaggagca 192
              ||||||||||||||||||||
Sbjct: 107392 aatgggtgtgtggaggagca 107411
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>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032G21, from chromosome 3, complete sequence
          Length = 187621

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    cctagctagctagcgagcta 57
             ||||||||||||||||||||
Sbjct: 98597 cctagctagctagcgagcta 98578
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     ggccatccggcaggcgctgg 330
               ||||||||||||||||||||
Sbjct: 4837285 ggccatccggcaggcgctgg 4837266
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>gb|AC145213.1| Homo sapiens fosmid clone XXFOS-800837B7 from 7, complete sequence
          Length = 41488

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   atggcaccaatgggtgtgtg 184
             ||||||||||||||||||||
Sbjct: 40969 atggcaccaatgggtgtgtg 40988
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>gb|AC144434.2| Homo sapiens fosmid clone XXFOS-801207C6 from 7, complete sequence
          Length = 39019

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   atggcaccaatgggtgtgtg 184
             ||||||||||||||||||||
Sbjct: 35210 atggcaccaatgggtgtgtg 35229
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 304     ggctgcaggccatccggcag 323
               ||||||||||||||||||||
Sbjct: 2569695 ggctgcaggccatccggcag 2569714
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>emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genome; segment 3/16
          Length = 349260

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    ccgacggcgtggtgatcgcg 287
              ||||||||||||||||||||
Sbjct: 242357 ccgacggcgtggtgatcgcg 242376
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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   gacctgcaggggctgcaggc 313
             ||||||||||||||||||||
Sbjct: 91651 gacctgcaggggctgcaggc 91632
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>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    cgacggcgtggtgatcgcgc 288
              ||||||||||||||||||||
Sbjct: 127313 cgacggcgtggtgatcgcgc 127294
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    cactgctggtcctcctgctg 236
              ||||||||||||||||||||
Sbjct: 186930 cactgctggtcctcctgctg 186911
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>gb|AC136964.2| Sus scrofa domestica clone RP44-154L9, complete sequence
          Length = 164640

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    tgggtttagatcctggggct 124
              ||||||||||||||||||||
Sbjct: 142682 tgggtttagatcctggggct 142663
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>emb|AJ428208.1|MMU428208 Mus musculus mRNA for phosphacan short isoform (RPTP-beta gene)
          Length = 3784

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 335  cccgcgggggttcctgagcgggtggaac 362
            |||||||||||||| ||||||| |||||
Sbjct: 2403 cccgcgggggttccggagcgggaggaac 2376
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 319     ggcaggcgctggtcgacccg 338
               ||||||||||||||||||||
Sbjct: 5457713 ggcaggcgctggtcgacccg 5457694



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 268     ccgacggcgtggtgatcgcg 287
               ||||||||||||||||||||
Sbjct: 5376784 ccgacggcgtggtgatcgcg 5376803
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 345     ttcctgagcgggtggaacgg 364
               ||||||||||||||||||||
Sbjct: 3011176 ttcctgagcgggtggaacgg 3011157
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>gb|AF474141.1| Oryza sativa typical A-type R2R3 Myb protein gene, complete cds
          Length = 9589

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   cctagctagctagcgagcta 57
            ||||||||||||||||||||
Sbjct: 4193 cctagctagctagcgagcta 4212
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>dbj|AK154459.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630036A16
            product:hypothetical protein, full insert sequence
          Length = 4754

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 335  cccgcgggggttcctgagcgggtggaac 362
            |||||||||||||| ||||||| |||||
Sbjct: 1142 cccgcgggggttccggagcgggaggaac 1169
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>gb|U77931.1|RNU77931 Rattus norvegicus rRNA promoter binding protein mRNA, complete cds
          Length = 1038

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 335 cccgcgggggttcctgagcgggtggaac 362
           |||||||||||||| ||||||| |||||
Sbjct: 362 cccgcgggggttccggagcgggaggaac 335
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>gb|DQ248949.1| Taihangia rupestris TrSHP MADS-box protein mRNA, complete cds
          Length = 958

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 39  ctagctagctagcgagctaggtac 62
           ||||||||||||| ||||||||||
Sbjct: 820 ctagctagctagctagctaggtac 843
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>tpg|BK000964.1| TPA: TPA_exp: Mus musculus ribosomal DNA, complete repeating unit
          Length = 45309

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 335   cccgcgggggttcctgagcgggtggaac 362
             |||||||||||||| ||||||| |||||
Sbjct: 11020 cccgcgggggttccggagcgggaggaac 11047
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 312      gccatccggcaggcgctggtcgacccgc 339
                |||||| |||||| ||||||||||||||
Sbjct: 21576046 gccatcaggcaggggctggtcgacccgc 21576019
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>gb|AC092535.4| Homo sapiens BAC clone RP11-20I20 from 4, complete sequence
          Length = 190462

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 296  cctgcaggggctgcaggcca 315
            ||||||||||||||||||||
Sbjct: 6693 cctgcaggggctgcaggcca 6712
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>ref|NM_147136.1| Rattus norvegicus rRNA promoter binding protein (LOC257642), mRNA
          Length = 1038

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 335 cccgcgggggttcctgagcgggtggaac 362
           |||||||||||||| ||||||| |||||
Sbjct: 362 cccgcgggggttccggagcgggaggaac 335
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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0006D11, complete sequence
          Length = 176637

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    tagctagctagcgagctaggtacg 63
             |||||||||||| |||||||||||
Sbjct: 71451 tagctagctagctagctaggtacg 71428
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 268     ccgacggcgtggtgatcgcgcagg 291
               |||||||||||||||| |||||||
Sbjct: 7224182 ccgacggcgtggtgatggcgcagg 7224159
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>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0708B04
          Length = 170523

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 312   gccatccggcaggcgctggtcgacccgc 339
             |||||| |||||| ||||||||||||||
Sbjct: 36220 gccatcaggcaggggctggtcgacccgc 36193
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>dbj|AB114630.1| Mus musculus CNR gene for cadherin-related neuronal receptor,
            complete cds
          Length = 10521

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 335  cccgcgggggttcctgagcgggtggaac 362
            |||||||||||||| ||||||| |||||
Sbjct: 9289 cccgcgggggttccggagcgggaggaac 9316
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>dbj|AK111984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F05, full
           insert sequence
          Length = 2158

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 312 gccatccggcaggcgctggtcgacccgc 339
           |||||| |||||| ||||||||||||||
Sbjct: 137 gccatcaggcaggggctggtcgacccgc 164
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>dbj|AK111772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067P10, full
           insert sequence
          Length = 2671

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 312 gccatccggcaggcgctggtcgacccgc 339
           |||||| |||||| ||||||||||||||
Sbjct: 231 gccatcaggcaggggctggtcgacccgc 258
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>emb|X82564.1|MM45SRRNA M.musculus 45S pre rRNA gene
          Length = 22118

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 335   cccgcgggggttcctgagcgggtggaac 362
             |||||||||||||| ||||||| |||||
Sbjct: 16655 cccgcgggggttccggagcgggaggaac 16682
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>gb|AC148014.3| Mus musculus BAC clone RP23-118N15 from 19, complete sequence
          Length = 222061

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    aatgggtgtgtggaggagca 192
              ||||||||||||||||||||
Sbjct: 148033 aatgggtgtgtggaggagca 148014
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>emb|X00525.1|MMRNA02 Mouse 28S ribosomal RNA
          Length = 4712

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 335  cccgcgggggttcctgagcgggtggaac 362
            |||||||||||||| ||||||| |||||
Sbjct: 2897 cccgcgggggttccggagcgggaggaac 2924


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,340,348
Number of Sequences: 3902068
Number of extensions: 2340348
Number of successful extensions: 57855
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56925
Number of HSP's gapped (non-prelim): 930
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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